Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 0.0e+00 1105.9 552 100.0
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 8.9e-296 1019.6 559 90.9
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 2.2e-270 935.3 522 85.1
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 3.8e-270 934.5 522 85.1
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 1.3e-230 803.1 518 72.8
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 1.6e-228 796.2 526 71.5
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 6.7e-227 790.8 527 72.1
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 1.8e-224 782.7 523 70.2
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 2.4e-224 782.3 529 69.9
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 5.3e-224 781.2 523 69.4
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 1.2e-223 780.0 492 73.8
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 3.5e-223 778.5 496 72.4
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 3.5e-223 778.5 524 69.8
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 1.0e-222 776.9 518 69.9
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.0e-222 776.9 525 69.5
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 1.0e-222 776.9 514 69.5
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 2.9e-222 775.4 522 69.9
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 3.8e-222 775.0 526 69.2
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 3.8e-222 775.0 524 69.1
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 5.0e-222 774.6 528 69.3
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 6.5e-222 774.2 524 69.7
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 6.5e-222 774.2 524 69.7
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 6.5e-222 774.2 523 69.6
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 6.5e-222 774.2 520 70.0
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.1e-221 773.5 501 71.5
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 1.5e-221 773.1 527 68.7
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.5e-221 773.1 520 69.6
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 2.5e-221 772.3 502 71.1
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 4.2e-221 771.5 495 71.1
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 4.2e-221 771.5 523 69.2
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 4.2e-221 771.5 527 68.7
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 5.5e-221 771.2 507 70.4
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 5.5e-221 771.2 520 69.8
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 5.5e-221 771.2 504 71.2
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 9.4e-221 770.4 514 69.6
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 1.2e-220 770.0 531 68.5
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.6e-220 769.6 520 69.8
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 2.1e-220 769.2 520 68.8
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 4.7e-220 768.1 508 70.3
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 4.7e-220 768.1 524 69.5
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 6.1e-220 767.7 487 73.3
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 6.1e-220 767.7 511 69.3
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 6.1e-220 767.7 495 70.9
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 8.0e-220 767.3 501 71.1
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 8.0e-220 767.3 508 70.3
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.0e-219 766.9 523 68.8
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 1.0e-219 766.9 519 69.4
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 1.0e-219 766.9 527 68.5
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 1.8e-219 766.1 502 70.5
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 2.3e-219 765.8 528 68.6
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 2.3e-219 765.8 549 66.7
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 3.0e-219 765.4 514 69.1
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 4.0e-219 765.0 524 68.7
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 5.2e-219 764.6 525 69.0
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 6.8e-219 764.2 520 68.7
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 6.8e-219 764.2 495 71.3
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 6.8e-219 764.2 495 71.3
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 8.8e-219 763.8 525 68.6
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 1.2e-218 763.5 567 64.7
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 2.0e-218 762.7 523 68.5
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 2.6e-218 762.3 499 73.1
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 5.7e-218 761.1 495 70.9
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 7.5e-218 760.8 502 70.5
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 7.5e-218 760.8 502 70.3
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 7.5e-218 760.8 495 70.3
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 7.5e-218 760.8 502 70.1
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 7.5e-218 760.8 524 68.3
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 9.8e-218 760.4 525 68.6
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 1.3e-217 760.0 503 70.4
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 1.7e-217 759.6 525 68.6
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 1.7e-217 759.6 495 70.5
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.7e-217 759.6 523 68.5
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 2.2e-217 759.2 495 70.5
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 2.2e-217 759.2 494 70.6
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 2.2e-217 759.2 523 68.1
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 2.8e-217 758.8 495 69.9
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 2.8e-217 758.8 525 68.0
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 3.7e-217 758.4 523 68.1
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 6.3e-217 757.7 523 67.3
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 6.3e-217 757.7 523 67.5
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 6.3e-217 757.7 523 67.5
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 1.1e-216 756.9 520 67.9
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.1e-216 756.9 523 67.3
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 1.4e-216 756.5 502 70.3
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 2.4e-216 755.7 495 69.7
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 2.4e-216 755.7 521 68.7
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 2.4e-216 755.7 524 67.9
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 4.1e-216 755.0 523 67.9
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 5.4e-216 754.6 521 68.7
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 7.0e-216 754.2 523 67.1
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 7.0e-216 754.2 523 67.1
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 7.0e-216 754.2 523 67.1
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 2.0e-215 752.7 521 67.2
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 2.7e-215 752.3 520 67.7
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 2.7e-215 752.3 521 67.9
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 4.5e-215 751.5 520 68.1
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 4.5e-215 751.5 538 66.2
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.0e-214 750.4 521 68.7
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 2.2e-214 749.2 495 70.3
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 2.9e-214 748.8 502 69.1
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 3.8e-214 748.4 505 69.3
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 5.0e-214 748.0 495 70.1
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 1.1e-213 746.9 505 68.9
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 3.2e-213 745.3 529 67.1
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 5.5e-213 744.6 523 67.3
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.2e-212 743.4 502 67.9
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 1.2e-212 743.4 524 67.6
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 4.7e-212 741.5 498 73.3
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.8e-211 739.6 517 66.3
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 3.0e-211 738.8 506 67.8
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 3.0e-211 738.8 506 67.8
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.2e-210 736.9 523 67.1
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 4.4e-210 734.9 523 65.6
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 7.5e-210 734.2 514 67.1
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 4.5e-207 724.9 514 67.1
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 1.7e-206 723.0 503 66.8
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 9.5e-205 717.2 498 67.9
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 1.0e-203 713.8 458 72.5
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 1.8e-203 713.0 535 64.7
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 4.9e-201 704.9 560 62.0
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 7.0e-200 701.0 456 70.2
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 4.3e-181 638.6 473 64.3
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 1.2e-175 620.5 419 69.0
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 9.6e-173 610.9 520 57.7
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 3.8e-169 599.0 524 56.7
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 4.9e-169 598.6 397 70.0
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.6e-164 583.6 525 57.1
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 2.8e-164 582.8 488 56.1
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 2.3e-158 563.1 379 69.4
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 3.8e-145 519.2 346 69.7
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 6.0e-143 511.9 419 59.9
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 1.9e-141 506.9 344 68.0
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 1.7e-137 493.8 499 50.3
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 1.2e-135 487.6 504 49.8
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 6.7e-126 455.3 492 47.0
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 1.3e-124 451.1 355 61.7
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 2.6e-122 443.4 281 72.6
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 4.5e-122 442.6 289 71.3
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 5.7e-117 425.6 353 60.1
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 7.2e-112 408.7 275 70.2
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 4.4e-101 372.9 285 65.3
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 5.4e-83 312.8 410 40.5
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 1.2e-77 295.0 166 77.7
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 2.7e-50 204.1 368 37.2
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 6.0e-50 203.0 325 39.1
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 1.4e-35 155.2 117 63.2
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 5.6e-32 143.3 93 72.0
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 2.0e-21 108.2 75 69.3
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 3.8e-20 104.0 79 50.6
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 1.9e-16 91.7 92 43.5
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 5.9e-13 80.1 73 56.2
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 2.2e-12 78.2 74 51.4
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 2.0e-08 65.1 48 54.2
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 1.4e-06 58.9 122 34.4


User provided reference genes

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