Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0008s0011 Marchantia polymorpha HOM05D001534 ORTHO05D004495 6.2e-35 150.2 74 100.0
Mapoly0058s0087 Marchantia polymorpha HOM05D001534 ORTHO05D004495 5.1e-21 104.0 74 68.9
Pp3c11_2840 Physcomitrium patens HOM05D001534 ORTHO05D004495 2.4e-15 85.1 71 54.9
Pp3c1_1320 Physcomitrium patens HOM05D001534 ORTHO05D004495 2.7e-14 81.6 71 53.5
CBR_g41757 Chara braunii HOM05D001534 ORTHO05D004495 1.2e-09 66.2 70 48.6
SEGI_41454 Sequoiadendron giganteum HOM05D001534 ORTHO05D004495 5.8e-09 63.9 67 44.8
SMO139G0082 Selaginella moellendorffii HOM05D001534 ORTHO05D004495 1.7e-08 62.4 65 46.2
SMO197G0080 Selaginella moellendorffii HOM05D001534 ORTHO05D004495 1.7e-08 62.4 70 48.6
GSVIVG01037739001 Vitis vinifera HOM05D001534 ORTHO05D004495 1.7e-08 62.4 65 47.7
DCAR_002221 Daucus carota HOM05D001534 ORTHO05D004495 2.9e-08 61.6 65 47.7
MBI17_g17518_MAGBIO Magnolia biondii HOM05D001534 ORTHO05D004495 3.8e-08 61.2 65 47.7
Migut.H01785 Erythranthe guttata HOM05D001534 ORTHO05D004495 1.4e-07 59.3 67 38.8
vmacro11580 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 1.4e-07 59.3 65 41.5
vmacro22992 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 1.4e-07 59.3 65 41.5
GSVIVG01003348001 Vitis vinifera HOM05D001534 ORTHO05D004495 1.4e-07 59.3 65 44.6
ECA246G1860 Erigeron canadensis HOM05D001534 ORTHO05D004495 3.2e-07 58.2 65 46.2
AT5G55290 Arabidopsis thaliana HOM05D001534 ORTHO05D004495 4.2e-07 57.8 65 41.5
BcaB05g22197 Brassica carinata HOM05D001534 ORTHO05D004495 4.2e-07 57.8 65 41.5
BcaC03g14248 Brassica carinata HOM05D001534 ORTHO05D004495 4.2e-07 57.8 65 41.5
C02p16290 Brassica napus HOM05D001534 ORTHO05D004495 4.2e-07 57.8 65 41.5
BolC2t07730H Brassica oleracea HOM05D001534 ORTHO05D004495 4.2e-07 57.8 65 41.5
Carub.0008s1562 Capsella rubella HOM05D001534 ORTHO05D004495 4.2e-07 57.8 65 41.5
Sp6g17210 Schrenkiella parvula HOM05D001534 ORTHO05D004495 4.2e-07 57.8 65 41.5
CDE11G0835 Ceratophyllum demersum HOM05D001534 ORTHO05D004495 5.5e-07 57.4 65 43.1
HanXRQChr05g0159691 Helianthus annuus HOM05D001534 ORTHO05D004495 5.5e-07 57.4 65 47.7
GSVIVG01003343001 Vitis vinifera HOM05D001534 ORTHO05D004495 5.5e-07 57.4 65 44.6
CDE05G1212 Ceratophyllum demersum HOM05D001534 ORTHO05D004495 7.1e-07 57.0 65 44.6
Migut.M01699 Erythranthe guttata HOM05D001534 ORTHO05D004495 9.3e-07 56.6 67 37.3
A02p09760 Brassica napus HOM05D001534 ORTHO05D004495 1.2e-06 56.2 65 40.0
BraA02t06040Z Brassica rapa HOM05D001534 ORTHO05D004495 1.2e-06 56.2 65 40.0
Thhalv10015209m.g Eutrema salsugineum HOM05D001534 ORTHO05D004495 1.2e-06 56.2 65 41.5
Lsat_1_v5_gn_9_90821 Lactuca sativa HOM05D001534 ORTHO05D004495 1.2e-06 56.2 67 43.3
Medtr5g094130 Medicago truncatula HOM05D001534 ORTHO05D004495 1.2e-06 56.2 67 38.8
AL8G30834 Arabidopsis lyrata HOM05D001534 ORTHO05D004495 1.6e-06 55.8 65 41.5
HanXRQChr03g0076901 Helianthus annuus HOM05D001534 ORTHO05D004495 1.6e-06 55.8 65 44.6
Manes.15G065300 Manihot esculenta HOM05D001534 ORTHO05D004495 1.6e-06 55.8 65 41.5
TWI39G1192 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 1.6e-06 55.8 65 41.5
MSTRG.13004 Avicennia marina HOM05D001534 ORTHO05D004495 2.1e-06 55.5 65 40.0
CANSAT35G0060 Cannabis sativa HOM05D001534 ORTHO05D004495 2.1e-06 55.5 65 40.0
CAN.G710.54 Capsicum annuum HOM05D001534 ORTHO05D004495 2.1e-06 55.5 65 40.0
HanXRQChr15g0463351 Helianthus annuus HOM05D001534 ORTHO05D004495 2.1e-06 55.5 65 46.2
SalBow8G1454 Salvia bowleyana HOM05D001534 ORTHO05D004495 2.1e-06 55.5 65 41.5
SGA_v2.0_scaffold168G38510 Striga asiatica HOM05D001534 ORTHO05D004495 2.1e-06 55.5 65 41.5
Cc05_g14430 Coffea canephora HOM05D001534 ORTHO05D004495 2.7e-06 55.1 65 41.5
CARHR268660 Cardamine hirsuta HOM05D001534 ORTHO05D004495 3.5e-06 54.7 65 41.5
Solyc09g098440.4 Solanum lycopersicum HOM05D001534 ORTHO05D004495 3.5e-06 54.7 65 40.0
Sopen09g036370 Solanum pennellii HOM05D001534 ORTHO05D004495 3.5e-06 54.7 65 40.0
PGSC0003DMG400021620 Solanum tuberosum HOM05D001534 ORTHO05D004495 3.5e-06 54.7 65 40.0
Manes.03G135400 Manihot esculenta HOM05D001534 ORTHO05D004495 4.6e-06 54.3 65 40.0
PSO210G6816 Papaver somniferum HOM05D001534 ORTHO05D004495 4.6e-06 54.3 65 41.5
PSO302G0069 Papaver somniferum HOM05D001534 ORTHO05D004495 4.6e-06 54.3 65 41.5
Potri.001G359600 Populus trichocarpa HOM05D001534 ORTHO05D004495 4.6e-06 54.3 65 41.5
PGR031G2647 Punica granatum HOM05D001534 ORTHO05D004495 4.6e-06 54.3 65 43.1
THA.LOC104817690 Tarenaya hassleriana HOM05D001534 ORTHO05D004495 4.6e-06 54.3 65 41.5
TPR.G30643 Trifolium pratense HOM05D001534 ORTHO05D004495 4.6e-06 54.3 65 38.5
Cpa.g.sc12.231 Carica papaya HOM05D001534 ORTHO05D004495 6.0e-06 53.9 65 40.0
Haze_09755 Corylus avellana HOM05D001534 ORTHO05D004495 6.0e-06 53.9 65 40.0
Nitab4.5_0000130g0260 Nicotiana tabacum HOM05D001534 ORTHO05D004495 6.0e-06 53.9 65 38.5
Potri.011G092600 Populus trichocarpa HOM05D001534 ORTHO05D004495 6.0e-06 53.9 65 40.0
RcHm_v2.0_Chr5g0041721 Rosa chinensis HOM05D001534 ORTHO05D004495 6.0e-06 53.9 65 40.0
TPR.G18335 Trifolium pratense HOM05D001534 ORTHO05D004495 6.0e-06 53.9 65 40.0
TWI38G0624 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 6.0e-06 53.9 65 41.5
arahy.Tifrunner.gnm1.ann1.DAYY2D Arachis hypogaea HOM05D001534 ORTHO05D004495 7.9e-06 53.5 65 40.0
Carub.0007s1413 Capsella rubella HOM05D001534 ORTHO05D004495 7.9e-06 53.5 64 40.6
TWI38G1361 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 7.9e-06 53.5 65 40.0
TAR627G0748 Trochodendron aralioides HOM05D001534 ORTHO05D004495 7.9e-06 53.5 65 41.5


User provided reference genes

Program Settings