Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0008s0010 Marchantia polymorpha HOM05D005601 ORTHO05D007265 2.2e-279 964.9 467 100.0
SMO196G0059 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 2.5e-137 493.0 432 56.2
Pp3c5_22590 Physcomitrium patens HOM05D005601 ORTHO05D007265 1.4e-127 460.7 495 49.3
SMO137G0068 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 2.3e-127 459.9 448 50.7
AagrBONN_evm.TU.Sc2ySwM_117.1218 Anthoceros agrestis HOM05D005601 ORTHO05D007265 4.3e-126 455.7 426 53.5
CBR_g32054 Chara braunii HOM05D005601 ORTHO05D007265 6.3e-125 451.8 454 49.8
MELO3C012601.2 Cucumis melo HOM05D005601 ORTHO05D007265 1.8e-111 407.1 446 44.6
Dinv42472 Davidia involucrata HOM05D005601 ORTHO05D007265 2.3e-111 406.8 448 46.2
Sopen07g034790 Solanum pennellii HOM05D005601 ORTHO05D007265 4.0e-111 406.0 446 46.0
ClCG09G022740 Citrullus lanatus HOM05D005601 ORTHO05D007265 4.4e-110 402.5 467 42.6
Nitab4.5_0006109g0020 Nicotiana tabacum HOM05D005601 ORTHO05D007265 9.7e-110 401.4 448 46.7
Solyc07g066640.3 Solanum lycopersicum HOM05D005601 ORTHO05D007265 9.7e-110 401.4 446 45.5
CAN.G943.56 Capsicum annuum HOM05D005601 ORTHO05D007265 1.3e-109 401.0 446 45.1
CsaV3_7G022950 Cucumis sativus L. HOM05D005601 ORTHO05D007265 1.7e-109 400.6 446 43.7
PSO675G6728 Papaver somniferum HOM05D005601 ORTHO05D007265 2.2e-109 400.2 448 42.9
Nitab4.5_0000029g0250 Nicotiana tabacum HOM05D005601 ORTHO05D007265 1.4e-108 397.5 433 46.9
Potri.010G172300 Populus trichocarpa HOM05D005601 ORTHO05D007265 1.4e-108 397.5 449 43.7
PGSC0003DMG400022116 Solanum tuberosum HOM05D005601 ORTHO05D007265 2.4e-108 396.7 450 44.9
TWI38G0323 Tripterygium wilfordii HOM05D005601 ORTHO05D007265 7.0e-108 395.2 448 43.1
CANSAT56G2459 Cannabis sativa HOM05D005601 ORTHO05D007265 1.2e-107 394.4 450 43.3
GSVIVG01020400001 Vitis vinifera HOM05D005601 ORTHO05D007265 5.9e-107 392.1 449 42.8
Peaxi162Scf00452g00334 Petunia axillaris HOM05D005601 ORTHO05D007265 1.0e-106 391.3 446 45.3
Potri.008G084100 Populus trichocarpa HOM05D005601 ORTHO05D007265 1.3e-106 391.0 449 42.3
CSS0009872 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 5.0e-106 389.0 448 44.9
CSS0045419 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 1.5e-105 387.5 448 44.6
Sed0023216 Sechium edule HOM05D005601 ORTHO05D007265 1.9e-105 387.1 446 43.9
Carub.0001s1603 Capsella rubella HOM05D005601 ORTHO05D007265 3.2e-105 386.3 459 41.4
Aqoxy1G01411 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 5.5e-105 385.6 451 42.6
AT1G16290 Arabidopsis thaliana HOM05D005601 ORTHO05D007265 9.4e-105 384.8 450 42.7
Eucgr.F04464 Eucalyptus grandis HOM05D005601 ORTHO05D007265 9.4e-105 384.8 448 43.5
AL1G28410 Arabidopsis lyrata HOM05D005601 ORTHO05D007265 1.2e-104 384.4 459 41.6
Migut.M01519 Erythranthe guttata HOM05D005601 ORTHO05D007265 4.7e-104 382.5 448 43.8
QL09p016707 Quercus lobata HOM05D005601 ORTHO05D007265 6.1e-104 382.1 450 43.6
BcaB02g06608 Brassica carinata HOM05D005601 ORTHO05D007265 1.8e-103 380.6 460 40.7
BolC5t30171H Brassica oleracea HOM05D005601 ORTHO05D007265 1.8e-103 380.6 466 40.3
MD05G1234300 Malus domestica HOM05D005601 ORTHO05D007265 2.3e-103 380.2 452 43.4
QL04p090699 Quercus lobata HOM05D005601 ORTHO05D007265 2.3e-103 380.2 450 43.3
Sp1g14480 Schrenkiella parvula HOM05D005601 ORTHO05D007583 4.0e-103 379.4 442 42.3
BcaC05g25587 Brassica carinata HOM05D005601 ORTHO05D007265 5.2e-103 379.0 466 40.1
C05p14450 Brassica napus HOM05D005601 ORTHO05D007265 5.2e-103 379.0 466 40.1
CARHR016760 Cardamine hirsuta HOM05D005601 ORTHO05D007265 5.2e-103 379.0 448 41.7
A06p12210 Brassica napus HOM05D005601 ORTHO05D007265 6.8e-103 378.6 466 40.3
BraA06t24389Z Brassica rapa HOM05D005601 ORTHO05D007265 6.8e-103 378.6 466 40.3
CiPaw.11G059700 Carya illinoinensis HOM05D005601 ORTHO05D007265 1.2e-102 377.9 448 41.5
Lj2A13G19 Lonicera japonica HOM05D005601 ORTHO05D007265 1.5e-102 377.5 446 43.3
Lj3g0011890 Lotus japonicus HOM05D005601 ORTHO05D007265 2.0e-102 377.1 457 41.4
Aa31LG7G820 Aethionema arabicum HOM05D005601 ORTHO05D007265 5.7e-102 375.6 451 42.1
Gorai.002G109700 Gossypium raimondii HOM05D005601 ORTHO05D007265 7.5e-102 375.2 446 42.4
Manes.14G007400 Manihot esculenta HOM05D005601 ORTHO05D007265 1.3e-101 374.4 446 41.7
FvH4_3g14650 Fragaria vesca HOM05D005601 ORTHO05D007265 2.2e-101 373.6 455 43.1
Nn7g38204 Nelumbo nucifera HOM05D005601 ORTHO05D007265 3.7e-101 372.9 449 42.1
Zm00001eb207280 Zea mays HOM05D005601 ORTHO05D007265 1.4e-100 370.9 448 40.6
RcHm_v2.0_Chr5g0024141 Rosa chinensis HOM05D005601 ORTHO05D007265 1.8e-100 370.5 452 42.7
Psat1g014320 Pisum sativum HOM05D005601 ORTHO05D007265 5.4e-100 369.0 450 40.7
PGR031G2718 Punica granatum HOM05D005601 ORTHO05D007265 5.4e-100 369.0 468 41.2
TAR627G0482 Trochodendron aralioides HOM05D005601 ORTHO05D007265 5.4e-100 369.0 394 46.2
Ciclev10006846m.g Citrus clementina HOM05D005601 ORTHO05D007265 7.0e-100 368.6 438 42.7
FAN11G1412 Fragaria x ananassa HOM05D005601 ORTHO05D007265 7.0e-100 368.6 463 42.8
Thhalv10007775m.g Eutrema salsugineum HOM05D005601 ORTHO05D007265 2.7e-99 366.7 448 41.1
Sc09g0007790 Simmondsia chinensis HOM05D005601 ORTHO05D007265 2.7e-99 366.7 446 41.9
MD10G1210800 Malus domestica HOM05D005601 ORTHO05D007265 3.5e-99 366.3 451 41.9
Sabra10G0131500 Salix brachista HOM05D005601 ORTHO05D007265 5.9e-99 365.5 449 41.6
Rhsim06G0242900 Rhododendron simsii HOM05D005601 ORTHO05D007265 1.0e-98 364.8 512 40.0
Prupe.4G131800 Prunus persica HOM05D005601 ORTHO05D007265 1.7e-98 364.0 458 41.7
vmacro11692 Vaccinium macrocarpon HOM05D005601 ORTHO05D007265 2.9e-98 363.2 497 39.2
Lalb_Chr25g0284511 Lupinus albus HOM05D005601 ORTHO05D007265 6.5e-98 362.1 450 41.6
SGA_v2.0_scaffold7G03617 Striga asiatica HOM05D005601 ORTHO05D007265 1.9e-97 360.5 452 41.8
Lalb_Chr20g0108481 Lupinus albus HOM05D005601 ORTHO05D007265 9.4e-97 358.2 450 41.1
MSTRG.7080 Avicennia marina HOM05D005601 ORTHO05D007265 1.6e-96 357.5 454 41.9
Atru.chr1.81 Acer truncatum HOM05D005601 ORTHO05D007265 4.7e-96 355.9 448 40.0
THA.LOC104812373 Tarenaya hassleriana HOM05D005601 ORTHO05D007265 2.3e-95 353.6 490 37.6
Thecc.07G184900 Theobroma cacao HOM05D005601 ORTHO05D007265 8.8e-95 351.7 447 40.5
SalBow8G4673 Salvia bowleyana HOM05D005601 ORTHO05D007265 2.6e-94 350.1 442 42.5
Aqoxy72s008 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 3.4e-94 349.7 437 41.6
TPR.G22999 Trifolium pratense HOM05D005601 ORTHO05D007265 4.4e-94 349.4 462 39.4
Gorai.013G145200 Gossypium raimondii HOM05D005601 ORTHO05D007265 1.7e-93 347.4 456 39.9
Gohir.A13G125400 Gossypium hirsutum HOM05D005601 ORTHO05D007265 3.1e-92 343.2 446 40.1
Gohir.D13G129200 Gossypium hirsutum HOM05D005601 ORTHO05D007265 9.1e-92 341.7 448 39.7
Oeu019720.3 Olea europaea HOM05D005601 ORTHO05D007265 4.5e-91 339.3 459 41.0
DCAR_016842 Daucus carota HOM05D005601 ORTHO05D000532 5.9e-91 339.0 455 40.0
MBI02_g08257_MAGBIO Magnolia biondii HOM05D005601 ORTHO05D007265 1.9e-89 334.0 370 45.1
SMO170G0006 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 7.2e-89 332.0 400 45.0
arahy.Tifrunner.gnm1.ann1.5WL8RC Arachis hypogaea HOM05D005601 ORTHO05D007265 8.9e-87 325.1 403 40.7
Cc05_g16460 Coffea canephora HOM05D005601 ORTHO05D007265 1.8e-84 317.4 373 44.5
FAN21G2538 Fragaria x ananassa HOM05D005601 ORTHO05D007265 1.2e-83 314.7 455 38.9
Glyma.08G165100 Glycine max HOM05D005601 ORTHO05D007265 7.3e-81 305.4 459 37.7
FAN16G1778 Fragaria x ananassa HOM05D005601 ORTHO05D007265 1.6e-80 304.3 455 38.5
Gohir.A01G099600 Gossypium hirsutum HOM05D005601 ORTHO05D007265 4.4e-78 296.2 358 41.6
Ca_03553_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 6.4e-77 292.4 448 35.9
Ca_29556_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 6.4e-77 292.4 448 35.9
Gohir.D01G084000 Gossypium hirsutum HOM05D005601 ORTHO05D007265 1.3e-74 284.6 372 39.8
Sabra08G0062400 Salix brachista HOM05D005601 ORTHO05D007265 4.3e-73 279.6 479 34.2
Dinv19582 Davidia involucrata HOM05D005601 ORTHO05D007265 6.4e-53 212.6 198 50.5
Oeu034984.1 Olea europaea HOM05D005601 ORTHO05D007265 9.3e-52 208.8 220 47.3
unitig_26.g10063 Utricularia gibba HOM05D005601 ORTHO05D007265 3.1e-47 193.7 277 38.3
Dinv19583 Davidia involucrata HOM05D005601 ORTHO05D007265 2.6e-46 190.7 185 49.2
SEGI_07478 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 4.2e-44 183.3 119 71.4
Haze_07789 Corylus avellana HOM05D005601 ORTHO05D007265 1.7e-42 177.9 186 44.1
HPP92_016685 Vanilla planifolia HOM05D005601 ORTHO05D007265 1.3e-40 171.8 185 42.2
HPP92_016686 Vanilla planifolia HOM05D005601 ORTHO05D007265 1.2e-38 165.2 154 48.1
ATR0752G225 Amborella trichopoda HOM05D005601 ORTHO05D007265 6.7e-34 149.4 119 58.0
ATR0752G040 Amborella trichopoda HOM05D005601 ORTHO05D007265 9.6e-33 145.6 145 46.2
Sabra07G0054100 Salix brachista HOM05D005601 ORTHO05D007265 6.2e-32 142.9 140 51.4
Sabra07G0054400 Salix brachista HOM05D005601 ORTHO05D007265 6.2e-32 142.9 140 51.4
Sabra07G0055500 Salix brachista HOM05D005601 ORTHO05D007265 6.2e-32 142.9 140 51.4
Sabra07G0054700 Salix brachista HOM05D005601 ORTHO05D007265 1.4e-31 141.7 140 50.7
Actinidia24664 Actinidia chinensis HOM05D005601 ORTHO05D007265 3.4e-30 137.1 185 39.5
SEGI_07505 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 4.5e-30 136.7 127 49.6
Sabra07G0055700 Salix brachista HOM05D005601 ORTHO05D007265 7.1e-28 129.4 122 54.1
arahy.Tifrunner.gnm1.ann1.4IME1R Arachis hypogaea HOM05D005601 ORTHO05D007265 1.0e-26 125.6 152 42.1
PRCOL_00003152 Prasinoderma coloniale HOM05D005601 ORTHO05D007265 1.8e-23 114.8 173 39.3
Aqoxy4G01783 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 3.2e-20 104.0 109 44.0
unitig_26.g10062 Utricularia gibba HOM05D000493 ORTHO05D008479 4.2e-20 103.6 109 45.9
Sabra07G0055000 Salix brachista HOM05D005601 ORTHO05D007265 5.5e-20 103.2 84 57.1
Aqoxy5G02624 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 2.1e-19 101.3 110 43.6
SEGI_02544 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 6.1e-19 99.8 78 57.7
CSS0035233 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 3.9e-18 97.1 101 43.6
SHI32865 Sapria himalayana HOM05D005601 ORTHO05D007265 7.4e-17 92.8 82 48.8
Cpa.g.sc32.54 Carica papaya HOM05D005601 ORTHO05D007265 4.1e-15 87.0 77 48.1
Cc01_g09470 Coffea canephora HOM05D005601 ORTHO05D007265 4.1e-15 87.0 87 44.8
Zm00001eb338130 Zea mays HOM05D005601 ORTHO05D007265 4.1e-15 87.0 142 35.2
SEGI_03880 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 9.0e-15 85.9 75 45.3
Cc05_g16470 Coffea canephora HOM05D005601 ORTHO05D007265 1.7e-13 81.6 84 45.2
ATR0752G173 Amborella trichopoda HOM05D005601 ORTHO05D007265 2.1e-11 74.7 54 53.7
Medtr2g065540 Medicago truncatula HOM05D005601 ORTHO05D007265 1.5e-09 68.6 58 46.6
SHI32862 Sapria himalayana HOM05D005601 ORTHO05D007265 1.3e-08 65.5 62 41.9
Zm00001eb249880 Zea mays HOM05D005601 ORTHO05D007265 4.8e-08 63.5 52 50.0
SHI32867 Sapria himalayana HOM05D005601 ORTHO05D007265 4.1e-07 60.5 55 45.5


User provided reference genes

Program Settings