Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 0.0e+00 1095.9 559 100.0
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 5.3e-296 1020.4 559 90.9
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 1.4e-277 959.1 522 87.4
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 9.4e-277 956.4 522 86.6
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 5.8e-234 814.3 520 74.0
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 1.7e-233 812.8 523 73.2
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 1.7e-230 802.7 523 72.3
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 2.3e-230 802.4 523 73.0
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 2.5e-229 798.9 514 71.6
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 5.6e-229 797.7 525 71.2
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 9.5e-229 797.0 524 71.2
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 9.5e-229 797.0 522 71.6
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 1.6e-228 796.2 529 71.8
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 2.1e-228 795.8 503 73.8
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 2.8e-228 795.4 522 71.5
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 2.8e-228 795.4 528 71.2
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 6.2e-228 794.3 518 71.8
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 6.2e-228 794.3 512 71.9
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 8.1e-228 793.9 514 71.8
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.1e-227 793.5 520 71.5
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 4.0e-227 791.6 525 70.9
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 6.8e-227 790.8 526 70.9
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 8.9e-227 790.4 530 70.8
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 8.9e-227 790.4 521 70.8
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 1.2e-226 790.0 522 71.3
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 1.2e-226 790.0 522 71.3
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 2.6e-226 788.9 521 70.8
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 3.4e-226 788.5 520 71.5
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 4.4e-226 788.1 520 71.7
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 7.5e-226 787.3 515 71.1
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 7.5e-226 787.3 520 71.7
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 9.9e-226 786.9 522 70.9
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 9.9e-226 786.9 520 71.3
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 1.3e-225 786.6 521 70.2
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 1.7e-225 786.2 527 70.6
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 2.2e-225 785.8 523 70.2
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 2.9e-225 785.4 504 71.8
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 2.9e-225 785.4 528 70.3
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 3.7e-225 785.0 514 71.0
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 3.7e-225 785.0 521 71.0
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 4.9e-225 784.6 521 70.2
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 6.4e-225 784.3 520 70.6
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 6.4e-225 784.3 514 71.2
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 6.4e-225 784.3 514 71.2
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 8.3e-225 783.9 520 71.2
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 8.3e-225 783.9 520 70.8
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 1.1e-224 783.5 528 69.9
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 1.1e-224 783.5 520 69.8
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.1e-224 783.5 520 71.2
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 1.4e-224 783.1 521 70.2
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 1.4e-224 783.1 521 70.2
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 1.9e-224 782.7 500 72.0
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 1.9e-224 782.7 500 72.8
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 2.4e-224 782.3 524 70.2
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 3.2e-224 781.9 499 72.5
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 4.1e-224 781.6 520 69.8
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 4.1e-224 781.6 520 69.8
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 4.1e-224 781.6 520 69.6
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 4.1e-224 781.6 500 72.2
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 5.4e-224 781.2 520 70.2
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 5.4e-224 781.2 568 66.4
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 5.4e-224 781.2 514 70.8
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 9.2e-224 780.4 521 70.2
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 1.2e-223 780.0 520 69.6
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 1.2e-223 780.0 520 69.6
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 1.2e-223 780.0 506 71.9
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 2.1e-223 779.2 520 69.6
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 2.7e-223 778.9 500 72.4
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 2.7e-223 778.9 510 70.8
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 2.7e-223 778.9 520 70.2
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 3.5e-223 778.5 499 72.1
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 3.5e-223 778.5 488 73.8
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 4.6e-223 778.1 500 72.2
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 4.6e-223 778.1 521 71.0
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 4.6e-223 778.1 521 70.4
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 6.0e-223 777.7 520 70.6
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 7.8e-223 777.3 500 72.8
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 7.8e-223 777.3 500 71.8
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 1.0e-222 776.9 526 70.3
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 1.0e-222 776.9 500 71.6
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 1.0e-222 776.9 514 71.2
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.3e-222 776.5 485 74.6
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 1.3e-222 776.5 511 70.5
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 1.7e-222 776.2 520 69.0
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 1.7e-222 776.2 526 70.2
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 2.3e-222 775.8 520 69.6
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 3.9e-222 775.0 500 71.4
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 5.1e-222 774.6 526 70.2
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 6.6e-222 774.2 539 68.1
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.5e-221 772.3 520 70.2
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 3.3e-221 771.9 538 67.8
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 3.3e-221 771.9 526 69.6
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 4.3e-221 771.5 521 70.8
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 4.3e-221 771.5 525 69.9
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 4.3e-221 771.5 521 72.2
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 5.6e-221 771.2 502 72.1
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 9.5e-221 770.4 525 69.7
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 9.5e-221 770.4 502 71.3
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.2e-220 770.0 520 70.2
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 3.6e-220 768.5 520 69.0
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 3.6e-220 768.5 505 71.5
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 6.2e-220 767.7 502 70.5
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 1.1e-219 766.9 500 71.4
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.4e-219 766.5 523 69.2
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 6.8e-219 764.2 502 70.5
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.5e-218 763.1 503 70.8
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.5e-218 763.1 503 70.8
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 3.4e-218 761.9 522 69.5
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 7.6e-218 760.8 507 70.4
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 9.9e-218 760.4 498 76.1
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 9.9e-218 760.4 529 68.4
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 7.1e-216 754.2 509 68.2
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 2.1e-212 742.7 523 67.7
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 2.0e-210 736.1 514 67.1
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 2.2e-209 732.6 515 67.6
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 7.1e-208 727.6 463 73.0
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 1.2e-207 726.9 535 66.4
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 4.6e-207 724.9 500 68.2
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 2.3e-206 722.6 506 66.4
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 2.3e-206 722.6 499 68.3
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 5.1e-206 721.5 564 62.8
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 3.8e-185 652.1 473 65.3
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 1.5e-181 640.2 419 71.1
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 2.4e-179 632.9 520 59.6
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 1.6e-175 620.2 524 58.4
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 2.0e-173 613.2 397 71.8
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 6.1e-167 591.7 515 58.8
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 7.4e-165 584.7 488 55.7
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 8.2e-164 581.3 379 71.8
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 5.7e-149 531.9 346 71.7
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 1.4e-147 527.3 419 62.1
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 5.5e-144 515.4 344 68.9
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 6.8e-142 508.4 504 51.8
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 2.7e-138 496.5 499 50.1
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 2.4e-131 473.4 497 48.3
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 2.8e-127 459.9 355 62.0
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 2.3e-126 456.8 289 73.0
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 8.9e-126 454.9 282 73.8
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.5e-120 437.6 353 61.8
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 2.5e-112 410.2 275 69.8
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 5.8e-101 372.5 285 64.2
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 6.4e-84 315.8 409 40.8
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 5.1e-81 306.2 183 76.5
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 1.0e-52 212.2 368 38.0
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 2.9e-52 210.7 325 40.0
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 5.9e-37 159.8 116 68.1
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 5.7e-32 143.3 93 72.0
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 1.1e-22 112.5 75 72.0
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 1.1e-22 112.5 79 57.0
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 6.1e-18 96.7 92 47.8
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 3.5e-13 80.9 73 57.5
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 1.0e-12 79.3 74 51.4
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 3.6e-10 70.9 48 60.4
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 1.4e-06 58.9 36 63.9
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 7.0e-06 56.6 122 32.8


User provided reference genes

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