Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 5.8e-177 624.4 382 100.0
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 1.6e-65 254.2 379 48.5
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 1.9e-63 247.3 372 47.0
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 2.9e-59 233.4 371 52.6
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.6e-49 201.1 280 42.1
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 1.3e-48 198.0 392 39.5
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.3e-48 197.2 374 43.0
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 3.0e-48 196.8 376 39.4
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 3.0e-48 196.8 269 43.5
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 5.1e-48 196.1 384 40.4
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 8.7e-48 195.3 376 39.9
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.5e-47 194.5 385 40.3
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 1.9e-47 194.1 377 39.0
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 1.9e-47 194.1 388 39.9
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 4.3e-47 193.0 388 40.7
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 5.6e-47 192.6 373 42.6
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 5.6e-47 192.6 389 40.1
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 5.6e-47 192.6 385 38.7
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 7.3e-47 192.2 365 41.9
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 9.6e-47 191.8 325 46.2
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 1.6e-46 191.0 392 39.3
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 1.6e-46 191.0 263 43.0
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 1.6e-46 191.0 265 40.0
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 2.1e-46 190.7 285 41.4
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 2.1e-46 190.7 393 40.7
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.1e-46 190.7 283 42.0
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 4.8e-46 189.5 377 39.5
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 4.8e-46 189.5 279 43.0
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 4.8e-46 189.5 277 42.6
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 4.8e-46 189.5 386 39.6
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 6.2e-46 189.1 383 39.4
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 8.1e-46 188.7 280 41.8
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 8.1e-46 188.7 276 41.7
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 1.1e-45 188.3 267 40.4
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 1.1e-45 188.3 268 40.7
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 1.1e-45 188.3 376 39.1
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 1.4e-45 188.0 283 42.0
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 1.8e-45 187.6 276 41.3
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 1.8e-45 187.6 381 40.2
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 2.4e-45 187.2 280 41.1
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 2.4e-45 187.2 267 41.2
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 2.4e-45 187.2 261 42.1
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 3.1e-45 186.8 374 39.0
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 4.0e-45 186.4 276 41.3
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 4.0e-45 186.4 271 41.0
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 5.3e-45 186.0 275 42.2
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 6.9e-45 185.7 385 38.2
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 9.0e-45 185.3 392 39.0
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 9.0e-45 185.3 387 37.2
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 9.0e-45 185.3 276 40.9
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.2e-44 184.9 385 37.9
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 1.2e-44 184.9 281 40.6
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 1.5e-44 184.5 281 39.1
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.0e-44 184.1 386 37.8
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 2.0e-44 184.1 286 40.9
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 2.6e-44 183.7 283 39.6
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 2.6e-44 183.7 380 39.5
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 4.4e-44 183.0 273 41.8
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 4.4e-44 183.0 277 41.9
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 4.4e-44 183.0 277 41.9
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.8e-44 182.6 281 39.9
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 5.8e-44 182.6 279 40.5
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 5.8e-44 182.6 382 39.0
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 5.8e-44 182.6 374 39.0
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 7.6e-44 182.2 375 39.7
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 7.6e-44 182.2 384 38.0
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 1.3e-43 181.4 279 39.8
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 1.7e-43 181.0 288 39.6
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 1.7e-43 181.0 382 40.1
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 1.7e-43 181.0 274 39.4
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 2.2e-43 180.6 382 39.5
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 2.9e-43 180.3 374 39.0
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 2.9e-43 180.3 279 40.1
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 2.9e-43 180.3 382 37.4
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 2.9e-43 180.3 387 38.8
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 3.8e-43 179.9 276 39.1
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.8e-43 179.9 385 37.7
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 3.8e-43 179.9 382 39.5
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 6.4e-43 179.1 377 39.3
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 6.4e-43 179.1 279 40.1
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 8.4e-43 178.7 379 38.5
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 8.4e-43 178.7 363 38.8
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 8.4e-43 178.7 377 39.3
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 8.4e-43 178.7 383 39.2
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 8.4e-43 178.7 285 40.0
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 1.1e-42 178.3 280 40.4
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 1.1e-42 178.3 297 41.1
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 1.4e-42 177.9 382 39.3
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 1.4e-42 177.9 382 39.5
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 1.4e-42 177.9 286 38.8
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 1.9e-42 177.6 278 41.4
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 3.2e-42 176.8 398 37.2
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 4.2e-42 176.4 383 37.3
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 4.2e-42 176.4 270 39.3
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 5.4e-42 176.0 282 39.7
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 5.4e-42 176.0 276 38.8
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 7.1e-42 175.6 369 38.5
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 7.1e-42 175.6 392 37.0
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 7.1e-42 175.6 357 38.7
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 1.2e-41 174.9 284 39.4
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 1.2e-41 174.9 268 39.6
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 1.2e-41 174.9 270 38.9
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 1.6e-41 174.5 398 38.7
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 2.1e-41 174.1 280 39.6
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 2.1e-41 174.1 385 37.1
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 2.7e-41 173.7 386 37.6
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 3.5e-41 173.3 259 40.5
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 4.6e-41 172.9 279 38.4
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 7.9e-41 172.2 263 40.7
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 1.0e-40 171.8 271 39.1
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 1.7e-40 171.0 291 38.1
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 1.7e-40 171.0 280 40.4
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 2.3e-40 170.6 384 38.8
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 3.0e-40 170.2 279 38.4
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 3.9e-40 169.9 275 38.9
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.1e-39 168.3 268 39.2
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 1.5e-39 167.9 257 40.9
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.5e-39 167.2 277 37.5
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 2.5e-39 167.2 301 36.5
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 1.6e-38 164.5 382 34.0
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 2.8e-38 163.7 373 38.9
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 3.6e-38 163.3 207 45.9
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 6.2e-38 162.5 254 36.6
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 9.0e-37 158.7 396 33.1
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 1.5e-36 157.9 291 37.5
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 4.5e-36 156.4 387 34.4
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 7.6e-36 155.6 281 37.4
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 1.3e-35 154.8 268 37.7
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 3.8e-35 153.3 366 33.3
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 4.6e-33 146.4 394 33.5
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 2.3e-32 144.1 368 36.7
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 3.9e-32 143.3 350 37.7
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 1.9e-31 141.0 279 34.8
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 2.1e-30 137.5 308 38.3
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 3.8e-27 126.7 227 35.7
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 4.2e-26 123.2 246 37.0
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 3.0e-24 117.1 267 40.4
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 9.6e-23 112.1 164 40.9
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 1.6e-22 111.3 164 41.5
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 4.8e-22 109.8 206 37.9
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 4.1e-21 106.7 203 35.0
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.8e-19 100.1 268 29.9
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 1.1e-15 88.6 283 32.2
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 1.1e-15 88.6 283 32.2
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 4.8e-14 83.2 139 34.5
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 5.3e-13 79.7 103 38.8
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 1.5e-12 78.2 106 35.8
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 1.4e-08 65.1 109 37.6
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 3.0e-08 63.9 105 30.5


User provided reference genes

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