Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0007s0017 Marchantia polymorpha HOM05D003201 ORTHO05D008805 3.2e-150 535.0 264 100.0
SEGI_31075 Sequoiadendron giganteum HOM05D003201 ORTHO05D008805 8.0e-69 264.6 285 47.7
CDE02G2127 Ceratophyllum demersum HOM05D003201 ORTHO05D008805 1.8e-68 263.5 261 51.7
Pp3c2_18510 Physcomitrium patens HOM05D003201 ORTHO05D008805 2.3e-68 263.1 265 52.5
PSO339G6265 Papaver somniferum HOM05D003201 ORTHO05D008805 6.8e-68 261.5 264 50.4
Medtr6g059320 Medicago truncatula HOM05D003201 ORTHO05D008805 6.4e-66 255.0 258 51.2
Aqoxy5G03624 Aquilegia oxysepala HOM05D003201 ORTHO05D008805 1.1e-65 254.2 265 49.8
Psat1g112800 Pisum sativum HOM05D003201 ORTHO05D008805 1.4e-65 253.8 262 49.6
PSO384G0221 Papaver somniferum HOM05D003201 ORTHO05D008805 3.2e-65 252.7 264 49.2
TPR.G5800 Trifolium pratense HOM05D003201 ORTHO05D008805 1.2e-64 250.8 260 50.0
Phvul.004G131600 Phaseolus vulgaris HOM05D003201 ORTHO05D008805 4.6e-64 248.8 259 48.6
VMungo0464G1483 Vigna mungo HOM05D003201 ORTHO05D008805 2.3e-63 246.5 270 47.8
SMO147G0005 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 3.0e-63 246.1 257 51.4
Gohir.D09G114700 Gossypium hirsutum HOM05D003201 ORTHO05D008805 3.9e-63 245.7 261 48.7
Potri.013G161600 Populus trichocarpa HOM05D003201 ORTHO05D008805 5.0e-63 245.4 260 48.8
Gohir.A09G117900 Gossypium hirsutum HOM05D003201 ORTHO05D008805 1.1e-62 244.2 261 48.3
Glyma.16G207100 Glycine max HOM05D003201 ORTHO05D008805 1.5e-62 243.8 261 49.4
Sabra13G0129200 Salix brachista HOM05D003201 ORTHO05D008805 1.9e-62 243.4 263 48.7
SMO132G0004 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 9.5e-62 241.1 272 48.2
CSS0031904 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008805 1.2e-61 240.7 260 50.0
Dinv15525 Davidia involucrata HOM05D003201 ORTHO05D008805 1.2e-61 240.7 269 49.1
Glyma.09G156400 Glycine max HOM05D003201 ORTHO05D008805 1.2e-61 240.7 259 49.0
MBI13_g39202_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 1.2e-61 240.7 265 48.3
THA.LOC104806236 Tarenaya hassleriana HOM05D003201 ORTHO05D008805 1.6e-61 240.4 257 48.6
Migut.N00525 Erythranthe guttata HOM05D003201 ORTHO05D008805 2.1e-61 240.0 268 47.4
TAR623G0449 Trochodendron aralioides HOM05D003201 ORTHO05D008805 2.8e-61 239.6 265 46.4
CANSAT35G1729 Cannabis sativa HOM05D003201 ORTHO05D008805 3.6e-61 239.2 255 49.0
Cc01_g05060 Coffea canephora HOM05D003201 ORTHO05D008805 3.6e-61 239.2 265 46.8
DCAR_028397 Daucus carota HOM05D003201 ORTHO05D008805 3.6e-61 239.2 259 48.6
ATR0068G091 Amborella trichopoda HOM05D003201 ORTHO05D008805 6.2e-61 238.4 257 46.7
Lalb_Chr01g0008671 Lupinus albus HOM05D003201 ORTHO05D008805 6.2e-61 238.4 265 47.9
ECA248G3933 Erigeron canadensis HOM05D003201 ORTHO05D008805 8.1e-61 238.0 255 47.5
Lj2g0011105 Lotus japonicus HOM05D003201 ORTHO05D008805 8.1e-61 238.0 256 47.7
CAN.G431.2 Capsicum annuum HOM05D003201 ORTHO05D008805 1.1e-60 237.7 265 47.9
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 1.4e-60 237.3 255 47.5
Sp7g18690 Schrenkiella parvula HOM05D003201 ORTHO05D008805 1.8e-60 236.9 264 48.5
Thecc.05G124600 Theobroma cacao HOM05D003201 ORTHO05D008805 1.8e-60 236.9 255 47.8
FvH4_3g46100 Fragaria vesca HOM05D003201 ORTHO05D008805 2.3e-60 236.5 262 46.9
QL04p043008 Quercus lobata HOM05D003201 ORTHO05D008805 2.3e-60 236.5 254 50.4
TWI34G1882 Tripterygium wilfordii HOM05D003201 ORTHO05D008805 2.3e-60 236.5 257 50.2
Actinidia16221 Actinidia chinensis HOM05D003201 ORTHO05D008805 3.1e-60 236.1 260 47.7
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 4.0e-60 235.7 255 46.3
Carub.0007s2082 Capsella rubella HOM05D003201 ORTHO05D008805 4.0e-60 235.7 264 48.9
Cfa002302 Carpinus fangiana HOM05D003201 ORTHO05D008805 4.0e-60 235.7 254 49.6
HanXRQChr17g0555621 Helianthus annuus HOM05D003201 ORTHO05D008805 4.0e-60 235.7 257 46.7
MELO3C024592.2 Cucumis melo HOM05D003201 ORTHO05D008805 5.2e-60 235.3 255 46.7
RcHm_v2.0_Chr5g0084171 Rosa chinensis HOM05D003201 ORTHO05D008805 5.2e-60 235.3 262 46.9
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 6.8e-60 235.0 256 48.0
Prupe.6G000300 Prunus persica HOM05D003201 ORTHO05D008805 6.8e-60 235.0 260 48.1
MSTRG.12815 Avicennia marina HOM05D003201 ORTHO05D008805 1.2e-59 234.2 255 47.1
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 1.5e-59 233.8 260 47.3
AL7G33540 Arabidopsis lyrata HOM05D003201 ORTHO05D008805 3.4e-59 232.6 255 47.5
GSVIVG01034815001 Vitis vinifera HOM05D003201 ORTHO05D008805 4.4e-59 232.3 262 46.6
ClCG01G015060 Citrullus lanatus HOM05D003201 ORTHO05D008805 5.8e-59 231.9 256 47.7
Thhalv10026088m.g Eutrema salsugineum HOM05D003201 ORTHO05D008805 7.5e-59 231.5 254 49.2
Solyc01g057570.3 Solanum lycopersicum HOM05D003201 ORTHO05D008805 7.5e-59 231.5 257 48.2
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 9.8e-59 231.1 256 47.3
Zm00001eb047810 Zea mays HOM05D003201 ORTHO05D008805 9.8e-59 231.1 273 46.2
CsaV3_6G041170 Cucumis sativus L. HOM05D003201 ORTHO05D008805 1.3e-58 230.7 255 47.5
Hma1.2p1_1133F.1_g260360 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 2.2e-58 229.9 263 48.7
Hma1.2p1_1133F.1_g260370 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 2.2e-58 229.9 263 48.7
Peaxi162Scf01181g00210 Petunia axillaris HOM05D003201 ORTHO05D008805 2.9e-58 229.6 275 46.9
Sopen01g022430 Solanum pennellii HOM05D003201 ORTHO05D008805 6.4e-58 228.4 257 47.9
MD11G1000200 Malus domestica HOM05D003201 ORTHO05D008805 1.9e-57 226.9 270 47.8
vmacro04280 Vaccinium macrocarpon HOM05D003201 ORTHO05D008805 3.2e-57 226.1 279 45.2
arahy.Tifrunner.gnm1.ann1.75P5EB Arachis hypogaea HOM05D003201 ORTHO05D008805 4.1e-57 225.7 215 51.6
HPP92_021155 Vanilla planifolia HOM05D003201 ORTHO05D008805 7.1e-57 224.9 261 46.7
CARHR227170 Cardamine hirsuta HOM05D003201 ORTHO05D008805 2.7e-56 223.0 255 46.3
AUR62000916 Chenopodium quinoa HOM05D003201 ORTHO05D008805 2.7e-56 223.0 263 45.6
unitig_0.g1143 Utricularia gibba HOM05D003201 ORTHO05D008805 1.3e-55 220.7 264 45.5
SGA_v2.0_scaffold6G03334 Striga asiatica HOM05D003201 ORTHO05D008805 2.3e-55 219.9 282 44.0
BcaC09g51346 Brassica carinata HOM05D003201 ORTHO05D008805 6.6e-55 218.4 198 53.0
EL10Ac4g09260 Beta vulgaris HOM05D003201 ORTHO05D008805 4.3e-54 215.7 299 41.1
arahy.Tifrunner.gnm1.ann1.F1EX5J Arachis hypogaea HOM05D003201 ORTHO05D008805 7.3e-54 214.9 234 47.4
Eucgr.J01718 Eucalyptus grandis HOM05D003201 ORTHO05D008805 1.2e-53 214.2 238 50.0
Sc18g0002730 Simmondsia chinensis HOM05D003201 ORTHO05D008805 1.6e-53 213.8 221 48.9
Sed0008662 Sechium edule HOM05D003201 ORTHO05D008805 2.8e-53 213.0 256 45.3
Sopen01g019970 Solanum pennellii HOM05D003201 ORTHO05D008805 2.3e-52 209.9 260 45.4
Gorai.006G132500 Gossypium raimondii HOM05D003201 ORTHO05D008805 5.2e-52 208.8 199 52.3
CiPaw.03G255400 Carya illinoinensis HOM05D003201 ORTHO05D008805 6.8e-52 208.4 229 50.7
Lsat_1_v5_gn_1_71340 Lactuca sativa HOM05D003201 ORTHO05D008805 6.8e-52 208.4 213 49.3
PGR119G1272 Punica granatum HOM05D003201 ORTHO05D008805 6.8e-52 208.4 255 45.5
Ciclev10029320m.g Citrus clementina HOM05D003201 ORTHO05D008805 3.4e-51 206.1 187 52.9
Os10g0420000 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008805 1.4e-49 200.7 256 43.8
Atru.chr2.209 Acer truncatum HOM05D003201 ORTHO05D008805 1.9e-49 200.3 194 49.5
AUR62004843 Chenopodium quinoa HOM05D003201 ORTHO05D008805 7.6e-43 178.3 126 59.5
AT4G20350 Arabidopsis thaliana HOM05D003201 ORTHO05D008805 2.7e-40 169.9 203 45.3
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 2.5e-38 163.3 132 56.8
AUR62005054 Chenopodium quinoa HOM05D003201 ORTHO05D008805 3.6e-37 159.5 206 43.7
Manes.18G121700 Manihot esculenta HOM05D003201 ORTHO05D008805 2.0e-35 153.7 194 43.8
Nitab4.5_0000075g0050 Nicotiana tabacum HOM05D003201 ORTHO05D008805 3.4e-35 152.9 292 34.9
FAN11G2508 Fragaria x ananassa HOM05D003201 ORTHO05D008805 4.5e-35 152.5 199 42.2
Haze_24508 Corylus avellana HOM05D003201 ORTHO05D008805 7.6e-35 151.8 197 44.2
FAN25G0659 Fragaria x ananassa HOM05D003201 ORTHO05D008805 7.6e-35 151.8 200 42.0
MCO03G055 Micromonas commoda HOM05D003201 ORTHO05D008805 1.9e-33 147.1 248 38.7
CBR_g45550 Chara braunii HOM05D000019 ORTHO05D000353 1.2e-32 144.4 123 53.7
MBI13_g36948_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 2.3e-31 140.2 149 49.0
Duzib093G2193 Durio zibethinus HOM05D003201 ORTHO05D008805 3.3e-30 136.3 255 35.3
SalBow3G4219 Salvia bowleyana HOM05D003201 ORTHO05D008805 2.8e-29 133.3 144 47.9
Cpa.g.sc30.50 Carica papaya HOM05D003201 ORTHO05D008805 6.9e-28 128.6 193 39.4
Rhsim13G0235500 Rhododendron simsii HOM05D003201 ORTHO05D008805 6.9e-28 128.6 291 32.0
Cre14.g632791 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008805 3.2e-25 119.8 177 38.4
Ca_25246_v3 Cicer arietinum L. HOM05D003201 ORTHO05D008805 3.9e-23 112.8 157 42.0
Nitab4.5_0005125g0010 Nicotiana tabacum HOM05D003201 ORTHO05D008805 2.8e-21 106.7 142 40.8
Hund07019 Selenicereus undatus HOM05D003201 ORTHO05D008805 1.8e-20 104.0 157 40.8
Lj1A555G38 Lonicera japonica HOM05D003201 ORTHO05D008805 1.5e-19 100.9 173 36.4
FAN21G2623 Fragaria x ananassa HOM05D003201 ORTHO05D008805 2.2e-18 97.1 166 36.7
Cfa026017 Carpinus fangiana HOM05D003201 ORTHO05D124792 3.8e-18 96.3 195 35.4
FAN11G4037 Fragaria x ananassa HOM05D003201 ORTHO05D008805 2.5e-17 93.6 72 56.9
PGSC0003DMG400026601 Solanum tuberosum HOM05D003201 ORTHO05D008805 2.5e-17 93.6 160 38.1
FAN25G1903 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.5e-14 84.3 64 59.4
COL.COLO4_24749 Corchorus olitorius HOM05D003201 ORTHO05D008805 7.4e-14 82.0 155 34.8
PRCOL_00004726 Prasinoderma coloniale HOM05D003201 ORTHO05D008805 1.3e-13 81.3 181 32.0
MCO08G131 Micromonas commoda HOM05D003201 ORTHO05D008805 2.1e-13 80.5 235 29.8
CBR_g45547 Chara braunii HOM05D003201 ORTHO05D008805 4.8e-13 79.3 277 28.2
PGSC0003DMG400029377 Solanum tuberosum HOM05D007105 ORTHO05D009304 1.4e-09 67.8 192 28.1
Solyc12g096230.2 Solanum lycopersicum HOM05D007105 ORTHO05D009304 4.2e-09 66.2 188 27.7
Sopen12g032090 Solanum pennellii HOM05D007105 ORTHO05D009304 4.2e-09 66.2 188 27.7
Sed0004381 Sechium edule HOM05D007105 ORTHO05D009304 9.3e-09 65.1 170 27.6
RcHm_v2.0_Chr7g0215051 Rosa chinensis HOM05D007105 ORTHO05D009304 2.7e-08 63.5 210 26.2
TAR375G0424 Trochodendron aralioides HOM05D007105 ORTHO05D009304 2.7e-08 63.5 179 27.9
Aqoxy3G04039 Aquilegia oxysepala HOM05D007105 ORTHO05D009304 7.9e-08 62.0 132 33.3
VMungo1215G3143 Vigna mungo HOM05D007105 ORTHO05D009304 7.9e-08 62.0 201 29.9
Migut.A00485 Erythranthe guttata HOM05D007105 ORTHO05D009304 1.0e-07 61.6 138 29.7
Nitab4.5_0006955g0010 Nicotiana tabacum HOM05D007105 ORTHO05D009304 1.0e-07 61.6 192 27.6
HPP92_014403 Vanilla planifolia HOM05D007105 ORTHO05D009304 1.0e-07 61.6 160 31.9
DCAR_000711 Daucus carota HOM05D007105 ORTHO05D009304 1.3e-07 61.2 126 34.1
Ca_25062_v3 Cicer arietinum L. HOM05D007105 ORTHO05D009304 2.3e-07 60.5 165 29.1
Duzib068G0877 Durio zibethinus HOM05D007105 ORTHO05D009304 2.3e-07 60.5 127 31.5
Lj2g0014172 Lotus japonicus HOM05D007105 ORTHO05D009304 2.3e-07 60.5 190 27.9
MSTRG.11847 Avicennia marina HOM05D007105 ORTHO05D009304 3.0e-07 60.1 133 30.1
Medtr5g026030 Medicago truncatula HOM05D007105 ORTHO05D009304 3.0e-07 60.1 181 29.3
Ciclev10004016m.g Citrus clementina HOM05D007105 ORTHO05D004932 3.9e-07 59.7 126 31.0
Dinv37443 Davidia involucrata HOM05D007105 ORTHO05D009304 3.9e-07 59.7 164 27.4
Phvul.002G123600 Phaseolus vulgaris HOM05D007105 ORTHO05D009304 3.9e-07 59.7 169 27.8
Psat2g144520 Pisum sativum HOM05D007105 ORTHO05D009304 3.9e-07 59.7 128 32.0
TPR.G28495 Trifolium pratense HOM05D007105 ORTHO05D009304 3.9e-07 59.7 181 28.7
arahy.Tifrunner.gnm1.ann1.C0VXQN Arachis hypogaea HOM05D007105 ORTHO05D009304 5.1e-07 59.3 184 27.2
arahy.Tifrunner.gnm1.ann1.E4PV4B Arachis hypogaea HOM05D007105 ORTHO05D009304 5.1e-07 59.3 184 27.2
MELO3C010538.2 Cucumis melo HOM05D007105 ORTHO05D009304 5.1e-07 59.3 133 27.8
CsaV3_4G037900 Cucumis sativus L. HOM05D007105 ORTHO05D009304 5.1e-07 59.3 129 27.9
EL10Ac5g12602 Beta vulgaris HOM05D007105 ORTHO05D009304 6.7e-07 58.9 191 30.4
QL12p002830 Quercus lobata HOM05D007105 ORTHO05D009304 6.7e-07 58.9 163 28.2
Hma1.2p1_0294F.1_g116480 Hydrangea macrophylla HOM05D007105 ORTHO05D009304 8.7e-07 58.5 136 29.4
AUR62017399 Chenopodium quinoa HOM05D007105 ORTHO05D009304 1.1e-06 58.2 121 33.9
ClCG11G016210 Citrullus lanatus HOM05D007105 ORTHO05D009304 1.1e-06 58.2 211 25.1
FvH4_5g24670 Fragaria vesca HOM05D007105 ORTHO05D009304 1.1e-06 58.2 180 26.7
FAN13G0608 Fragaria x ananassa HOM05D007105 ORTHO05D009304 1.1e-06 58.2 180 26.7
FAN18G4245 Fragaria x ananassa HOM05D007105 ORTHO05D009304 1.1e-06 58.2 180 26.7
TPR.G38782 Trifolium pratense HOM05D007105 ORTHO05D009304 1.1e-06 58.2 181 28.2
FAN08G0498 Fragaria x ananassa HOM05D007105 ORTHO05D009304 1.5e-06 57.8 180 26.7
Peaxi162Scf00876g00218 Petunia axillaris HOM05D007105 ORTHO05D009304 1.5e-06 57.8 178 27.5
COL.COLO4_16732 Corchorus olitorius HOM05D007105 ORTHO05D009304 1.9e-06 57.4 127 29.9
FAN04G2788 Fragaria x ananassa HOM05D007105 ORTHO05D009304 2.5e-06 57.0 180 26.7
Thecc.03G321700 Theobroma cacao HOM05D007105 ORTHO05D009304 2.5e-06 57.0 164 27.4
Oeu031946.1 Olea europaea HOM05D007105 ORTHO05D009304 3.3e-06 56.6 158 28.5
PSO063G0027 Papaver somniferum HOM05D007105 ORTHO05D009304 3.3e-06 56.6 126 30.2
Prupe.5G014800 Prunus persica HOM05D007105 ORTHO05D009304 3.3e-06 56.6 214 26.2
AUR62010501 Chenopodium quinoa HOM05D007105 ORTHO05D009304 4.3e-06 56.2 121 33.9
Oeu047792.1 Olea europaea HOM05D007105 ORTHO05D009304 4.3e-06 56.2 133 27.8
Potri.003G106300 Populus trichocarpa HOM05D007105 ORTHO05D009304 7.4e-06 55.5 125 31.2
GSVIVG01036908001 Vitis vinifera HOM05D007105 ORTHO05D004932 9.7e-06 55.1 179 26.8


User provided reference genes

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