Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0006s0110 Marchantia polymorpha HOM05D005249 ORTHO05D006457 1.9e-85 319.3 186 100.0
TWI38G0945 Tripterygium wilfordii HOM05D005249 ORTHO05D006457 1.6e-39 166.8 152 61.2
Cpa.g.sc97.36 Carica papaya HOM05D005249 ORTHO05D006457 3.6e-39 165.6 129 65.1
Sp3g18550 Schrenkiella parvula HOM05D005249 ORTHO05D006457 3.6e-39 165.6 129 65.1
C05p43800 Brassica napus HOM05D005249 ORTHO05D006457 6.1e-39 164.9 129 65.1
HanXRQChr05g0159111 Helianthus annuus HOM05D005249 ORTHO05D006457 8.0e-39 164.5 130 65.4
Carub.0001s3985 Capsella rubella HOM05D005249 ORTHO05D006457 1.0e-38 164.1 129 65.1
AL1G58630 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 1.4e-38 163.7 129 65.1
AL8G37450 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 1.4e-38 163.7 129 65.1
AT1G50900 Arabidopsis thaliana HOM05D005249 ORTHO05D006457 1.4e-38 163.7 129 65.1
BolC5t33095H Brassica oleracea HOM05D005249 ORTHO05D006457 1.4e-38 163.7 129 64.3
Carub.0003s2051 Capsella rubella HOM05D005249 ORTHO05D006457 1.4e-38 163.7 121 67.8
Aa31LG10G3330 Aethionema arabicum HOM05D005249 ORTHO05D006457 1.8e-38 163.3 129 65.1
FvH4_3g22190 Fragaria vesca HOM05D005249 ORTHO05D006457 1.8e-38 163.3 129 65.1
Lj8A167T50 Lonicera japonica HOM05D005249 ORTHO05D006457 1.8e-38 163.3 129 65.1
Prupe.4G209000 Prunus persica HOM05D005249 ORTHO05D006457 2.3e-38 162.9 129 65.1
QL08p011891 Quercus lobata HOM05D005249 ORTHO05D006457 2.3e-38 162.9 124 66.1
QL08p012062 Quercus lobata HOM05D005249 ORTHO05D006457 2.3e-38 162.9 124 66.1
Cfa020386 Carpinus fangiana HOM05D005249 ORTHO05D006457 3.0e-38 162.5 129 64.3
Thecc.07G044000 Theobroma cacao HOM05D005249 ORTHO05D006457 3.0e-38 162.5 129 63.6
MSTRG.15162 Avicennia marina HOM05D005249 ORTHO05D006457 5.2e-38 161.8 140 61.4
Thhalv10021639m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 5.2e-38 161.8 129 64.3
CANSAT21G2135 Cannabis sativa HOM05D005249 ORTHO05D006457 6.7e-38 161.4 154 57.1
Ciclev10009689m.g Citrus clementina HOM05D005249 ORTHO05D006457 6.7e-38 161.4 129 65.1
Haze_09646 Corylus avellana HOM05D005249 ORTHO05D006457 6.7e-38 161.4 129 63.6
RcHm_v2.0_Chr5g0038151 Rosa chinensis HOM05D005249 ORTHO05D006457 6.7e-38 161.4 129 64.3
GSVIVG01002001001 Vitis vinifera HOM05D005249 ORTHO05D006457 8.8e-38 161.0 129 63.6
A05p28310 Brassica napus HOM05D005249 ORTHO05D006457 1.2e-37 160.6 174 52.9
BraA05t21713Z Brassica rapa HOM05D005249 ORTHO05D006457 1.2e-37 160.6 174 52.9
Migut.M01785 Erythranthe guttata HOM05D005249 ORTHO05D006457 1.2e-37 160.6 131 64.1
Glyma.18G102100 Glycine max HOM05D005249 ORTHO05D006457 1.5e-37 160.2 155 58.7
Gohir.D05G366500 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.5e-37 160.2 130 63.8
PGR031G1044 Punica granatum HOM05D005249 ORTHO05D006457 1.5e-37 160.2 142 59.2
arahy.Tifrunner.gnm1.ann1.I048YJ Arachis hypogaea HOM05D005249 ORTHO05D006457 2.0e-37 159.8 138 62.3
BcaC08g43263 Brassica carinata HOM05D005249 ORTHO05D006457 2.0e-37 159.8 129 63.6
C06p06070 Brassica napus HOM05D005249 ORTHO05D006457 2.0e-37 159.8 129 63.6
BolC6t35720H Brassica oleracea HOM05D005249 ORTHO05D006457 2.0e-37 159.8 129 63.6
Sabra16G0285800 Salix brachista HOM05D005249 ORTHO05D006457 2.0e-37 159.8 129 65.1
A05p19870 Brassica napus HOM05D005249 ORTHO05D006457 2.6e-37 159.5 129 63.6
C05p33210 Brassica napus HOM05D005249 ORTHO05D006457 2.6e-37 159.5 129 63.6
BraA05t20892Z Brassica rapa HOM05D005249 ORTHO05D006457 2.6e-37 159.5 129 63.6
Gohir.D01G064800 Gossypium hirsutum HOM05D005249 ORTHO05D006457 2.6e-37 159.5 129 63.6
Gorai.002G085700 Gossypium raimondii HOM05D005249 ORTHO05D006457 2.6e-37 159.5 129 63.6
SGA_v2.0_scaffold258G45797 Striga asiatica HOM05D005249 ORTHO05D006457 2.6e-37 159.5 170 55.3
THA.LOC104798778 Tarenaya hassleriana HOM05D005249 ORTHO05D006457 2.6e-37 159.5 129 63.6
Aqoxy1G03622 Aquilegia oxysepala HOM05D005249 ORTHO05D006457 3.3e-37 159.1 132 62.1
A06p02830 Brassica napus HOM05D005249 ORTHO05D006457 3.3e-37 159.1 129 63.6
BraA06t23490Z Brassica rapa HOM05D005249 ORTHO05D006457 3.3e-37 159.1 129 63.6
Eucgr.F03446 Eucalyptus grandis HOM05D005249 ORTHO05D006457 3.3e-37 159.1 124 66.9
Glyma.08G312800 Glycine max HOM05D005249 ORTHO05D006457 3.3e-37 159.1 155 58.7
Lsat_1_v5_gn_5_5181 Lactuca sativa HOM05D005249 ORTHO05D006457 3.3e-37 159.1 150 57.3
Lj6g0004310 Lotus japonicus HOM05D005249 ORTHO05D006457 4.4e-37 158.7 125 65.6
Sp1g37640 Schrenkiella parvula HOM05D005249 ORTHO05D006457 4.4e-37 158.7 129 63.6
CSS0021065 Camellia sinensis var. sinensis HOM05D005249 ORTHO05D006457 5.7e-37 158.3 130 63.8
Thhalv10011819m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 5.7e-37 158.3 129 62.8
Gohir.A01G077300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 5.7e-37 158.3 129 62.8
arahy.Tifrunner.gnm1.ann1.EK5LIC Arachis hypogaea HOM05D005249 ORTHO05D006457 7.5e-37 157.9 138 61.6
Manes.03G127000 Manihot esculenta HOM05D005249 ORTHO05D006457 7.5e-37 157.9 129 64.3
BcaB07g33531 Brassica carinata HOM05D005249 ORTHO05D006457 9.7e-37 157.5 129 62.8
COL.COLO4_09631 Corchorus olitorius HOM05D005249 ORTHO05D006457 9.7e-37 157.5 129 64.3
Manes.15G073900 Manihot esculenta HOM05D005249 ORTHO05D006457 9.7e-37 157.5 129 64.3
TAR626G0063 Trochodendron aralioides HOM05D005249 ORTHO05D006457 9.7e-37 157.5 132 60.6
Gohir.A04G019300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.3e-36 157.1 130 62.3
CiPaw.11G187100 Carya illinoinensis HOM05D005249 ORTHO05D006457 1.7e-36 156.8 126 61.1
Lalb_Chr15g0080371 Lupinus albus HOM05D005249 ORTHO05D006457 1.7e-36 156.8 124 66.1
Potri.001G420900 Populus trichocarpa HOM05D005249 ORTHO05D006457 2.2e-36 156.4 129 64.3
unitig_578.g16003 Utricularia gibba HOM05D005249 ORTHO05D006457 2.2e-36 156.4 126 60.3
VMungo0540G0590 Vigna mungo HOM05D005249 ORTHO05D006457 2.8e-36 156.0 124 65.3
ECA246G1486 Erigeron canadensis HOM05D005249 ORTHO05D006457 3.7e-36 155.6 147 59.9
Dinv22281 Davidia involucrata HOM05D005249 ORTHO05D006457 4.8e-36 155.2 124 62.1
Duzib213G0461 Durio zibethinus HOM05D005249 ORTHO05D006457 4.8e-36 155.2 127 63.0
Phvul.006G038600 Phaseolus vulgaris HOM05D005249 ORTHO05D006457 4.8e-36 155.2 124 64.5
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 6.3e-36 154.8 148 56.8
Ca_08298_v3 Cicer arietinum L. HOM05D005249 ORTHO05D006457 8.3e-36 154.5 149 59.7
Hma1.2p1_1271F.1_g271820 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 8.3e-36 154.5 129 59.7
Hma1.2p1_1609F.1_g293423 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 8.3e-36 154.5 129 59.7
ATR0752G229 Amborella trichopoda HOM05D005249 ORTHO05D006457 1.1e-35 154.1 142 59.9
MD03G1207700 Malus domestica HOM05D005249 ORTHO05D006457 1.1e-35 154.1 129 62.0
Medtr3g019320 Medicago truncatula HOM05D005249 ORTHO05D006457 1.1e-35 154.1 147 58.5
PSO210G5271 Papaver somniferum HOM05D005249 ORTHO05D006457 3.1e-35 152.5 132 60.6
TAR624G0120 Trochodendron aralioides HOM05D005249 ORTHO05D006457 3.1e-35 152.5 132 59.1
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 5.3e-35 151.8 125 61.6
PSO832G4498 Papaver somniferum HOM05D005249 ORTHO05D006457 7.0e-35 151.4 132 60.6
Psat5g216840 Pisum sativum HOM05D005249 ORTHO05D006457 7.0e-35 151.4 151 55.0
Actinidia05108 Actinidia chinensis HOM05D005249 ORTHO05D006457 9.1e-35 151.0 156 54.5
MBI02_g28338_MAGBIO Magnolia biondii HOM05D005249 ORTHO05D006457 1.2e-34 150.6 148 55.4
Atru.chr2.3277 Acer truncatum HOM05D005249 ORTHO05D006457 2.7e-34 149.4 118 65.3
SMO137G0373 Selaginella moellendorffii HOM05D005249 ORTHO05D006457 5.9e-34 148.3 120 60.8
Actinidia09913 Actinidia chinensis HOM05D005249 ORTHO05D006457 1.0e-33 147.5 124 61.3
CDE05G2685 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 1.3e-33 147.1 124 60.5
CsaV3_3G005280 Cucumis sativus L. HOM05D005249 ORTHO05D006457 1.3e-33 147.1 130 61.5
Rhsim04G0001800 Rhododendron simsii HOM05D005249 ORTHO05D006457 1.3e-33 147.1 139 58.3
Sc16g0006280 Simmondsia chinensis HOM05D005249 ORTHO05D006457 1.3e-33 147.1 117 65.0
CAN.G1781.9 Capsicum annuum HOM05D005249 ORTHO05D006457 2.9e-33 146.0 131 60.3
MELO3C025397.2 Cucumis melo HOM05D005249 ORTHO05D006457 2.9e-33 146.0 130 60.8
ClCG10G005560 Citrullus lanatus HOM05D005249 ORTHO05D006457 5.0e-33 145.2 130 60.0
Oeu062605.1 Olea europaea HOM05D005249 ORTHO05D006457 8.5e-33 144.4 143 53.1
Solyc10g006370.3 Solanum lycopersicum HOM05D005249 ORTHO05D006457 8.5e-33 144.4 156 52.6
Nn1g07102 Nelumbo nucifera HOM05D005249 ORTHO05D006457 1.1e-32 144.1 132 56.1
Sed0007548 Sechium edule HOM05D005249 ORTHO05D006457 1.1e-32 144.1 130 60.0
Nitab4.5_0005048g0030 Nicotiana tabacum HOM05D005249 ORTHO05D006457 1.5e-32 143.7 139 58.3
BcaB02g11192 Brassica carinata HOM05D005249 ORTHO05D006457 1.9e-32 143.3 132 58.3
Pp3c5_16520 Physcomitrium patens HOM05D005249 ORTHO05D006457 1.9e-32 143.3 177 50.8
Sopen10g002320 Solanum pennellii HOM05D005249 ORTHO05D006457 1.9e-32 143.3 147 53.7
Peaxi162Scf00387g00046 Petunia axillaris HOM05D005249 ORTHO05D006457 3.2e-32 142.5 140 56.4
PGSC0003DMG400014394 Solanum tuberosum HOM05D005249 ORTHO05D006457 5.5e-32 141.7 145 53.8
AUR62020502 Chenopodium quinoa HOM05D005249 ORTHO05D006457 9.4e-32 141.0 129 60.5
Cc05_g13500 Coffea canephora HOM05D005249 ORTHO05D006457 9.4e-32 141.0 183 47.0
Gorai.009G425200 Gossypium raimondii HOM05D005249 ORTHO05D006457 1.2e-31 140.6 170 48.8
AUR62015702 Chenopodium quinoa HOM05D005249 ORTHO05D006457 4.7e-31 138.7 129 58.9
Ah.06g182920 Amaranthus hybridus HOM05D005249 ORTHO05D006457 1.8e-30 136.7 129 58.1
CDE05G0273 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 3.0e-30 136.0 137 51.1
Dinv40734 Davidia involucrata HOM05D005249 ORTHO05D006457 5.2e-30 135.2 79 78.5
BcaB07g33530 Brassica carinata HOM05D005249 ORTHO05D006457 6.8e-30 134.8 79 79.7
CBR_g12744 Chara braunii HOM05D005249 ORTHO05D006457 2.0e-29 133.3 178 50.6
SEGI_08050 Sequoiadendron giganteum HOM05D005249 ORTHO05D006457 5.7e-29 131.7 113 61.1
EL10Ac4g07899 Beta vulgaris HOM05D005249 ORTHO05D006457 2.8e-28 129.4 129 57.4
CDE11G0574 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 3.7e-28 129.0 137 49.6
Zm00001eb322850 Zea mays HOM05D005249 ORTHO05D006457 1.8e-27 126.7 158 51.3
Os07g0520800 Oryza sativa ssp. japonica HOM05D005249 ORTHO05D006457 5.4e-27 125.2 163 50.9
HPP92_017607 Vanilla planifolia HOM05D005249 ORTHO05D006457 5.4e-27 125.2 135 51.1
Cre12.g551950 Chlamydomonas reinhardtii HOM05D005249 ORTHO05D006457 1.9e-24 116.7 109 51.4
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 3.3e-24 115.9 239 34.7
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 4.2e-24 115.5 239 34.7
vmacro09735 Vaccinium macrocarpon HOM05D005249 ORTHO05D006457 1.7e-20 103.6 185 40.5
PRCOL_00000858 Prasinoderma coloniale HOM05D005249 ORTHO05D006457 8.3e-20 101.3 100 49.0
Nitab4.5_0001393g0170 Nicotiana tabacum HOM05D005249 ORTHO05D006457 1.4e-19 100.5 122 49.2
CARHR096310 Cardamine hirsuta HOM05D005249 ORTHO05D006457 8.6e-17 91.3 87 57.5
MCO16G329 Micromonas commoda HOM05D005249 ORTHO05D006457 8.6e-17 91.3 101 45.5
CARHR040950 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.9e-16 90.1 87 56.3
Rhsim04G0000700 Rhododendron simsii HOM05D005249 ORTHO05D006457 9.5e-16 87.8 87 55.2
BcaB06g26188 Brassica carinata HOM05D005249 ORTHO05D006457 1.0e-14 84.3 87 55.2
BcaC05g27384 Brassica carinata HOM05D005249 ORTHO05D006457 3.4e-13 79.3 43 79.1
CARHR040940 Cardamine hirsuta HOM05D005249 ORTHO05D006457 3.4e-13 79.3 43 81.4
FAN21G3293 Fragaria x ananassa HOM05D005249 ORTHO05D006457 9.8e-13 77.8 82 54.9
Cfa020388 Carpinus fangiana HOM05D005249 ORTHO05D006457 2.9e-12 76.3 82 52.4
CARHR096330 Cardamine hirsuta HOM05D005249 ORTHO05D006457 8.3e-12 74.7 94 44.7
Nn1g07101 Nelumbo nucifera HOM05D005249 ORTHO05D006457 9.2e-11 71.2 46 67.4
TPR.G3850 Trifolium pratense HOM05D005249 ORTHO05D006457 2.7e-10 69.7 77 54.5
Glyma.09G102000 Glycine max HOM05D005249 ORTHO05D006457 3.0e-09 66.2 37 86.5
Hund02097 Selenicereus undatus HOM05D000420 ORTHO05D000110 3.1e-06 56.2 42 64.3


User provided reference genes

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