Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0006s0069 Marchantia polymorpha HOM05D023241 ORTHO05D023499 0.0e+00 2226.1 1420 100.0
AagrBONN_evm.TU.Sc2ySwM_362.182 Anthoceros agrestis HOM05D023241 ORTHO05D023499 1.5e-41 176.4 631 33.6
Pp3c8_3950 Physcomitrium patens HOM05D023241 ORTHO05D023499 2.6e-36 159.1 1545 30.5
Pp3c3_28570 Physcomitrium patens HOM05D023241 ORTHO05D023499 9.1e-34 150.6 1116 28.0
ATR0697G055 Amborella trichopoda HOM05D003044 ORTHO05D001869 2.7e-30 139.0 660 29.5
Nn6g34609 Nelumbo nucifera HOM05D003044 ORTHO05D001869 5.7e-28 131.3 589 29.2
Nn2g14384 Nelumbo nucifera HOM05D003044 ORTHO05D001869 1.5e-23 116.7 535 27.3
TAR636G1345 Trochodendron aralioides HOM05D003044 ORTHO05D001869 2.1e-22 112.8 1416 26.1
MD02G1257800 Malus domestica HOM05D003044 ORTHO05D001869 1.2e-17 97.1 964 25.1
Prupe.2G074800 Prunus persica HOM05D003044 ORTHO05D001869 1.2e-17 97.1 795 26.5
GSVIVG01034601001 Vitis vinifera HOM05D003044 ORTHO05D001869 2.0e-17 96.3 791 26.7
Sed0023754 Sechium edule HOM05D003044 ORTHO05D001869 1.0e-16 94.0 768 27.5
RcHm_v2.0_Chr1g0332241 Rosa chinensis HOM05D003044 ORTHO05D001869 1.7e-16 93.2 840 26.9
Potri.008G014800 Populus trichocarpa HOM05D003044 ORTHO05D001869 8.6e-16 90.9 679 26.5
FvH4_7g05480 Fragaria vesca HOM05D003044 ORTHO05D001869 1.5e-15 90.1 836 26.0
Glyma.20G195200 Glycine max HOM05D003044 ORTHO05D001869 1.5e-15 90.1 848 25.9
TAR633G1492 Trochodendron aralioides HOM05D003044 ORTHO05D001869 2.5e-15 89.4 1442 26.5
MD07G1063100 Malus domestica HOM05D003044 ORTHO05D001869 4.2e-15 88.6 854 27.0
Hma1.2p1_0098F.1_g048320 Hydrangea macrophylla HOM05D003044 ORTHO05D001869 2.1e-14 86.3 606 27.2
PSO384G0573 Papaver somniferum HOM05D003044 ORTHO05D001869 6.1e-14 84.7 1441 23.9
TAR625G0109 Trochodendron aralioides HOM05D006756 ORTHO05D001869 1.0e-13 84.0 573 27.7
CSS0000792 Camellia sinensis var. sinensis HOM05D003044 ORTHO05D001869 3.0e-13 82.4 970 25.3
Nn6g34615 Nelumbo nucifera HOM05D003044 ORTHO05D001869 3.0e-13 82.4 1448 27.3
THA.LOC104823155 Tarenaya hassleriana HOM05D003044 ORTHO05D001869 3.0e-13 82.4 881 25.1
CsaV3_6G004440 Cucumis sativus L. HOM05D003044 ORTHO05D001869 4.0e-13 82.0 851 26.6
TAR636G2086 Trochodendron aralioides HOM05D006756 ORTHO05D001869 4.0e-13 82.0 539 26.9
CDE07G1072 Ceratophyllum demersum HOM05D003044 ORTHO05D001869 5.2e-13 81.6 1421 25.7
Duzib106G0590 Durio zibethinus HOM05D003044 ORTHO05D001869 1.5e-12 80.1 883 25.8
Oeu040012.1 Olea europaea HOM05D003044 ORTHO05D001869 2.6e-12 79.3 395 30.1
Thhalv10019905m.g Eutrema salsugineum HOM05D003044 ORTHO05D001869 5.7e-12 78.2 818 25.1
ECA238G0186 Erigeron canadensis HOM05D003044 ORTHO05D001869 7.5e-12 77.8 489 28.4
Thecc.10G119700 Theobroma cacao HOM05D003044 ORTHO05D001869 7.5e-12 77.8 849 26.0
MBI01_g36593_MAGBIO Magnolia biondii HOM05D006756 ORTHO05D001869 1.3e-11 77.0 845 27.3
TPR.G19799 Trifolium pratense HOM05D003044 ORTHO05D001869 1.3e-11 77.0 522 26.2
Atru.chr12.1091 Acer truncatum HOM05D003044 ORTHO05D001869 2.2e-11 76.3 286 30.4
AUR62042206 Chenopodium quinoa HOM05D003044 ORTHO05D001869 2.8e-11 75.9 798 26.1
A01p41560 Brassica napus HOM05D003044 ORTHO05D001869 6.3e-11 74.7 537 26.1
MBI11_g01313_MAGBIO Magnolia biondii HOM05D003044 ORTHO05D001869 8.3e-11 74.3 1400 28.4
CANSAT56G3871 Cannabis sativa HOM05D003044 ORTHO05D001869 1.1e-10 73.9 814 25.1
Gohir.A05G396100 Gossypium hirsutum HOM05D003044 ORTHO05D001869 1.4e-10 73.6 793 26.7
Aa31LG3G3500 Aethionema arabicum HOM05D003044 ORTHO05D001869 1.8e-10 73.2 1474 26.5
CAN.G143.56 Capsicum annuum HOM05D003044 ORTHO05D001869 1.8e-10 73.2 860 26.5
MBI05_g36784_MAGBIO Magnolia biondii HOM05D003044 ORTHO05D001869 2.4e-10 72.8 869 25.1
TWI15G1087 Tripterygium wilfordii HOM05D003044 ORTHO05D001869 2.4e-10 72.8 802 24.7
CARHR085230 Cardamine hirsuta HOM05D003044 ORTHO05D001869 4.1e-10 72.0 883 23.9
Actinidia34738 Actinidia chinensis HOM05D003044 ORTHO05D001869 7.0e-10 71.2 996 23.9
Psat6g171360 Pisum sativum HOM05D003044 ORTHO05D001869 7.0e-10 71.2 528 26.7
CiPaw.13G045500 Carya illinoinensis HOM05D003044 ORTHO05D001869 9.2e-10 70.9 832 25.6
PSO339G5639 Papaver somniferum HOM05D003044 ORTHO05D001869 1.2e-09 70.5 1412 25.6
arahy.Tifrunner.gnm1.ann1.Y6HWEI Arachis hypogaea HOM05D003044 ORTHO05D001869 1.6e-09 70.1 879 25.1
SGA_v2.0_scaffold13G06427 Striga asiatica HOM05D003044 ORTHO05D001869 1.6e-09 70.1 1100 25.1
FAN03G0021 Fragaria x ananassa HOM05D003044 ORTHO05D001869 2.7e-09 69.3 967 24.2
THA.LOC104816476 Tarenaya hassleriana HOM05D003044 ORTHO05D001869 2.7e-09 69.3 862 24.5
CiPaw.14G036200 Carya illinoinensis HOM05D003044 ORTHO05D001869 5.9e-09 68.2 1021 25.1
CiPaw.03G245600 Carya illinoinensis HOM05D006756 ORTHO05D001869 1.0e-08 67.4 423 27.2
QL02p088845 Quercus lobata HOM05D006756 ORTHO05D001869 1.3e-08 67.0 548 24.8
Carub.0003s0988 Capsella rubella HOM05D003044 ORTHO05D001869 1.7e-08 66.6 804 24.8
CBR_g45261 Chara braunii HOM05D023241 ORTHO05D023499 2.3e-08 66.2 250 32.4
Solyc11g006390.2 Solanum lycopersicum HOM05D003044 ORTHO05D001869 2.3e-08 66.2 846 25.4
QL04p049165 Quercus lobata HOM05D003044 ORTHO05D001869 2.9e-08 65.9 793 25.3
Lj5g0009221 Lotus japonicus HOM05D003044 ORTHO05D001869 3.8e-08 65.5 845 25.9
SEGI_30019 Sequoiadendron giganteum HOM05D003044 ORTHO05D006672 5.0e-08 65.1 864 24.7
Lalb_Chr21g0312741 Lupinus albus HOM05D003044 ORTHO05D001869 6.6e-08 64.7 939 24.5
arahy.Tifrunner.gnm1.ann1.JKR5UJ Arachis hypogaea HOM05D003044 ORTHO05D001869 8.6e-08 64.3 922 24.9
FAN10G0351 Fragaria x ananassa HOM05D003044 ORTHO05D001869 8.6e-08 64.3 963 23.9
Medtr1g090340 Medicago truncatula HOM05D003044 ORTHO05D001869 8.6e-08 64.3 774 25.7
QL04p048819 Quercus lobata HOM05D003044 ORTHO05D001869 8.6e-08 64.3 790 25.3
Duzib128G0650 Durio zibethinus HOM05D003044 ORTHO05D001869 1.1e-07 63.9 844 25.2
Oeu058044.1 Olea europaea HOM05D006756 ORTHO05D001869 1.1e-07 63.9 387 27.4
Cfa003391 Carpinus fangiana HOM05D006756 ORTHO05D001869 2.5e-07 62.8 297 26.9
FAN01G1587 Fragaria x ananassa HOM05D003044 ORTHO05D001869 2.5e-07 62.8 963 23.6
Gohir.D04G019000 Gossypium hirsutum HOM05D003044 ORTHO05D001869 5.6e-07 61.6 845 26.3
Gorai.012G022500 Gossypium raimondii HOM05D003044 ORTHO05D001869 5.6e-07 61.6 871 26.1
Peaxi162Scf00120g00721 Petunia axillaris HOM05D003044 ORTHO05D001869 5.6e-07 61.6 921 25.1
MD02G1029800 Malus domestica HOM05D006756 ORTHO05D001869 1.2e-06 60.5 758 25.2
ECA236G0350 Erigeron canadensis HOM05D006756 ORTHO05D001869 1.6e-06 60.1 747 25.2
Actinidia31115 Actinidia chinensis HOM05D003044 ORTHO05D001869 2.1e-06 59.7 776 25.0
PGR142G2180 Punica granatum HOM05D006756 ORTHO05D001869 2.1e-06 59.7 545 24.4
Cc02_g09260 Coffea canephora HOM05D003044 ORTHO05D001869 2.8e-06 59.3 830 24.6
Gohir.D06G054000 Gossypium hirsutum HOM05D006756 ORTHO05D001869 2.8e-06 59.3 418 25.1
AUR62013339 Chenopodium quinoa HOM05D006756 ORTHO05D001869 4.7e-06 58.5 342 24.3
CsaV3_1G030330 Cucumis sativus L. HOM05D006756 ORTHO05D001869 4.7e-06 58.5 651 23.8
Gohir.A05G396000 Gossypium hirsutum HOM05D003044 ORTHO05D001869 4.7e-06 58.5 847 26.7
HanXRQChr06g0180441 Helianthus annuus HOM05D006756 ORTHO05D001869 4.7e-06 58.5 666 24.5
Lalb_Chr11g0072181 Lupinus albus HOM05D006756 ORTHO05D001869 4.7e-06 58.5 496 26.0
Glyma.20G070600 Glycine max HOM05D003044 ORTHO05D001869 6.1e-06 58.2 831 25.8
TPR.G9536 Trifolium pratense HOM05D006756 ORTHO05D001869 8.0e-06 57.8 671 24.0


User provided reference genes

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