Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 2.1e-100 369.4 235 100.0
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 2.2e-46 189.9 192 57.3
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 5.3e-40 168.7 123 69.1
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 1.7e-38 163.7 122 65.6
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 2.2e-38 163.3 129 65.9
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 6.5e-38 161.8 124 66.1
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 1.5e-37 160.6 125 64.8
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 2.5e-37 159.8 124 65.3
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 7.2e-37 158.3 126 66.7
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 7.2e-37 158.3 129 65.9
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 1.2e-36 157.5 125 64.8
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 1.2e-36 157.5 124 65.3
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 1.2e-36 157.5 125 66.4
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 1.6e-36 157.1 125 64.8
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 1.6e-36 157.1 125 63.2
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 2.1e-36 156.8 114 67.5
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 2.1e-36 156.8 125 64.8
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 2.1e-36 156.8 124 64.5
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 2.7e-36 156.4 108 70.4
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 2.7e-36 156.4 108 70.4
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 2.7e-36 156.4 124 64.5
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 3.6e-36 156.0 129 61.2
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 3.6e-36 156.0 129 61.2
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 4.7e-36 155.6 128 60.9
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 6.1e-36 155.2 125 63.2
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 6.1e-36 155.2 125 65.6
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 6.1e-36 155.2 125 64.8
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 6.1e-36 155.2 129 62.8
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 8.0e-36 154.8 125 65.6
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 1.0e-35 154.5 108 68.5
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 1.0e-35 154.5 125 63.2
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 1.4e-35 154.1 129 64.3
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 1.4e-35 154.1 100 73.0
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 1.4e-35 154.1 125 64.0
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 1.8e-35 153.7 129 62.0
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 2.3e-35 153.3 108 68.5
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 2.3e-35 153.3 125 63.2
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 2.3e-35 153.3 125 64.0
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 2.3e-35 153.3 125 64.0
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 2.3e-35 153.3 125 64.0
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 2.3e-35 153.3 125 65.6
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 3.0e-35 152.9 125 64.0
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 3.0e-35 152.9 128 64.1
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 5.2e-35 152.1 125 63.2
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 5.2e-35 152.1 125 63.2
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 6.8e-35 151.8 125 64.0
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 8.8e-35 151.4 125 64.0
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 1.2e-34 151.0 108 67.6
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 1.5e-34 150.6 108 70.4
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 1.5e-34 150.6 124 62.9
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 2.0e-34 150.2 123 62.6
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.4e-34 149.4 129 63.6
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 3.4e-34 149.4 106 69.8
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 4.4e-34 149.1 125 61.6
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 4.4e-34 149.1 125 61.6
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 5.7e-34 148.7 131 62.6
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 7.5e-34 148.3 105 69.5
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 1.3e-33 147.5 125 62.4
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 1.3e-33 147.5 125 62.4
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 1.7e-33 147.1 125 61.6
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 1.7e-33 147.1 116 62.9
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.7e-33 147.1 125 62.4
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.7e-33 147.1 124 64.5
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.7e-33 147.1 124 64.5
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.7e-33 147.1 124 64.5
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 1.7e-33 147.1 125 60.0
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 1.7e-33 147.1 125 62.4
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 1.7e-33 147.1 124 62.9
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 2.2e-33 146.7 125 60.8
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 2.2e-33 146.7 125 60.8
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 2.2e-33 146.7 108 66.7
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 2.2e-33 146.7 125 62.4
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 2.2e-33 146.7 108 65.7
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 2.2e-33 146.7 124 61.3
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 2.8e-33 146.4 128 61.7
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 2.8e-33 146.4 107 68.2
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 3.7e-33 146.0 106 67.0
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 3.7e-33 146.0 124 63.7
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 4.8e-33 145.6 108 64.8
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 4.8e-33 145.6 125 60.0
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 4.8e-33 145.6 108 63.9
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 6.3e-33 145.2 125 62.4
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 6.3e-33 145.2 108 65.7
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 6.3e-33 145.2 128 60.2
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 8.3e-33 144.8 125 62.4
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 8.3e-33 144.8 124 63.7
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 1.1e-32 144.4 126 61.9
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 1.1e-32 144.4 107 65.4
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 1.1e-32 144.4 108 63.9
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 1.8e-32 143.7 128 59.4
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 1.8e-32 143.7 125 60.8
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 2.4e-32 143.3 104 66.3
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 9.1e-32 141.4 108 64.8
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 9.1e-32 141.4 108 64.8
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 1.2e-31 141.0 128 59.4
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 1.2e-31 141.0 108 66.7
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 3.5e-31 139.4 125 59.2
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 4.5e-31 139.0 108 64.8
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 7.7e-31 138.3 117 60.7
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 1.0e-30 137.9 96 68.8
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 1.0e-30 137.9 125 57.6
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.0e-30 137.9 108 62.0
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 1.3e-30 137.5 108 63.9
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 1.7e-30 137.1 106 64.2
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 1.7e-30 137.1 106 64.2
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 2.2e-30 136.7 106 63.2
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 2.2e-30 136.7 109 66.1
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 2.9e-30 136.3 108 63.0
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 2.9e-30 136.3 108 62.0
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 5.0e-30 135.6 106 63.2
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 1.9e-29 133.7 124 58.1
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 1.9e-29 133.7 111 59.5
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 1.9e-29 133.7 108 62.0
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 3.2e-29 132.9 108 62.0
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 5.5e-29 132.1 108 62.0
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.2e-28 131.0 130 52.3
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 2.1e-28 130.2 102 58.8
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 2.7e-28 129.8 89 71.9
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 8.0e-28 128.3 108 57.4
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 8.0e-28 128.3 89 70.8
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 8.0e-28 128.3 104 63.5
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 1.4e-27 127.5 109 54.1
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 8.8e-27 124.8 122 51.6
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 2.0e-26 123.6 132 53.0
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 4.4e-26 122.5 125 52.0
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 4.4e-26 122.5 109 57.8
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 1.3e-25 120.9 127 53.5
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 1.7e-25 120.6 110 53.6
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 1.1e-24 117.9 108 52.8
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 2.9e-22 109.8 111 52.3
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 1.5e-21 107.5 84 65.5
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 1.2e-20 104.4 100 56.0
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.1e-20 103.6 100 55.0
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 1.2e-18 97.8 98 54.1
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 1.2e-18 97.8 98 54.1
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 2.0e-18 97.1 119 47.1
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 3.4e-18 96.3 97 48.5
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 5.7e-18 95.5 94 57.4
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 2.2e-17 93.6 135 40.7
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 2.9e-17 93.2 79 58.2
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.9e-17 93.2 83 61.4
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.8e-16 90.5 66 63.6
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 2.4e-16 90.1 107 50.5
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 7.0e-16 88.6 81 58.0
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 1.0e-14 84.7 61 65.6
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 1.3e-14 84.3 83 55.4
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 1.5e-13 80.9 81 54.3
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 2.3e-11 73.6 47 72.3
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 2.0e-10 70.5 98 34.7
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 2.0e-10 70.5 101 41.6
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 6.4e-09 65.5 52 61.5
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 2.4e-08 63.5 74 44.6
AagrBONN_evm.TU.Sc2ySwM_117.908 Anthoceros agrestis HOM05D004341 ORTHO05D005075 4.1e-08 62.8 100 45.0
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 2.7e-07 60.1 52 59.6
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 3.0e-06 56.6 40 60.0


User provided reference genes

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