Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 1.4e-243 845.9 430 100.0
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 2.8e-172 609.0 429 69.7
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 5.5e-168 594.7 429 69.0
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 8.6e-153 544.3 434 65.0
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 9.5e-152 540.8 434 63.4
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 1.0e-150 537.3 434 62.0
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 1.2e-149 533.9 436 62.6
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.7e-148 530.0 434 62.4
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.7e-148 530.0 464 59.5
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 2.2e-148 529.6 434 62.4
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 1.4e-147 526.9 437 61.6
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 4.1e-147 525.4 434 62.4
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 7.0e-147 524.6 433 62.4
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.6e-146 523.5 431 61.5
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 3.5e-146 522.3 440 60.0
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 7.8e-146 521.2 433 61.4
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 7.8e-146 521.2 433 61.9
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 8.6e-145 517.7 434 61.8
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 2.5e-144 516.2 435 60.0
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 7.3e-144 514.6 434 61.3
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 2.1e-143 513.1 432 61.1
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 3.6e-143 512.3 405 63.7
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 6.1e-143 511.5 350 72.3
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 2.3e-142 509.6 436 61.0
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 5.2e-142 508.4 434 60.8
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 8.9e-142 507.7 435 59.3
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 4.4e-141 505.4 436 58.9
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 7.0e-139 498.0 432 58.3
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 9.2e-139 497.7 444 58.1
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 9.2e-139 497.7 420 60.0
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 1.6e-138 496.9 435 58.6
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 4.6e-138 495.4 435 58.4
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 4.6e-138 495.4 420 60.7
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 7.8e-138 494.6 431 57.8
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 7.8e-138 494.6 434 59.9
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.3e-137 493.0 435 58.4
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 3.0e-137 492.7 434 59.9
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 3.9e-137 492.3 436 57.8
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 6.6e-137 491.5 432 57.9
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 6.6e-137 491.5 461 57.7
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 8.6e-137 491.1 435 57.9
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 1.5e-136 490.3 436 58.5
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 4.3e-136 488.8 420 60.2
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 5.6e-136 488.4 433 58.7
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 7.3e-136 488.0 432 58.6
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 9.5e-136 487.6 434 58.5
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 1.6e-135 486.9 431 58.0
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.6e-135 486.9 437 58.6
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 2.8e-135 486.1 434 59.2
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 2.8e-135 486.1 434 59.2
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 3.6e-135 485.7 433 58.4
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 3.6e-135 485.7 434 59.0
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 2.3e-134 483.0 432 57.9
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 2.3e-134 483.0 435 57.5
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 2.3e-134 483.0 432 56.9
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 3.1e-134 482.6 432 56.0
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 3.1e-134 482.6 445 57.1
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 6.8e-134 481.5 433 57.0
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 8.9e-134 481.1 390 63.1
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 9.8e-133 477.6 435 58.4
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 1.3e-132 477.2 436 57.3
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 2.2e-132 476.5 432 56.0
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 6.4e-132 474.9 390 62.8
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 8.3e-132 474.6 432 56.2
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 4.1e-131 472.2 437 57.9
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 7.0e-131 471.5 433 59.1
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 1.0e-129 467.6 451 53.2
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 1.3e-129 467.2 401 59.6
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 1.3e-129 467.2 401 59.6
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 1.1e-128 464.2 452 54.0
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.5e-128 463.8 415 56.4
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.9e-128 463.4 432 56.2
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 5.6e-128 461.8 423 55.8
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 2.8e-127 459.5 433 55.0
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.6e-127 459.1 347 66.6
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 4.7e-127 458.8 446 54.0
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 3.1e-126 456.1 433 54.3
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 8.9e-126 454.5 434 54.4
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 8.3e-124 448.0 436 56.7
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 1.1e-123 447.6 431 54.1
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 2.4e-123 446.4 435 53.1
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 1.6e-122 443.7 416 56.7
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 2.7e-122 443.0 455 50.3
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 1.7e-121 440.3 357 63.9
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 3.0e-121 439.5 433 54.0
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 8.6e-121 438.0 382 59.2
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 1.9e-120 436.8 447 52.8
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 5.6e-120 435.3 433 51.0
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 5.6e-120 435.3 399 54.9
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 9.5e-120 434.5 431 52.9
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 2.8e-119 433.0 449 52.1
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 1.4e-118 430.6 453 51.7
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 1.8e-118 430.3 454 51.5
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 6.8e-118 428.3 438 52.3
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 1.5e-117 427.2 455 50.1
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 2.0e-117 426.8 455 50.3
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 4.4e-117 425.6 420 51.9
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 1.7e-116 423.7 383 56.4
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.2e-116 423.3 434 54.8
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 7.1e-115 418.3 402 54.7
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 9.2e-115 417.9 428 53.3
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 4.6e-114 415.6 316 66.8
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 4.6e-114 415.6 436 51.1
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 2.3e-113 413.3 371 56.6
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.4e-110 404.1 432 52.1
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 2.4e-110 403.3 341 61.3
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 2.2e-108 396.7 394 52.0
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 6.4e-108 395.2 394 51.8
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 2.4e-107 393.3 296 67.2
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 3.2e-107 392.9 306 63.7
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.2e-106 391.0 368 53.3
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 2.7e-106 389.8 281 69.8
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 2.1e-103 380.2 376 52.7
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 2.4e-102 376.7 435 49.7
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 3.4e-101 372.9 465 47.7
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 7.6e-101 371.7 424 46.9
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 2.9e-100 369.8 326 56.4
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 8.4e-100 368.2 429 49.0
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 3.2e-99 366.3 393 49.6
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 1.1e-94 351.3 385 48.6
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 3.7e-87 326.2 321 54.2
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 5.7e-80 302.4 331 46.8
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 1.4e-75 287.7 156 94.2
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 3.0e-73 280.0 441 43.5
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 9.7e-72 275.0 177 80.2
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 4.8e-71 272.7 157 88.5
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 6.3e-71 272.3 159 86.8
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 3.1e-70 270.0 155 88.4
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 1.0e-68 265.0 509 38.1
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 4.2e-67 259.6 157 84.1
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.1e-62 243.4 145 84.1
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 5.3e-62 242.7 279 44.8
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 9.1e-62 241.9 286 44.4
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 2.2e-60 237.3 351 39.0
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.9e-59 234.2 141 83.7
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 4.7e-58 229.6 292 41.1
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 8.0e-58 228.8 133 88.7
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.8e-57 227.6 279 43.7
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 3.0e-57 226.9 230 48.7
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 6.7e-57 225.7 279 43.4
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.2e-55 220.7 278 41.7
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 2.6e-53 213.8 182 61.0
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 1.0e-52 211.8 124 84.7
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 1.0e-52 211.8 184 60.9
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 4.1e-46 189.9 211 44.5
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 9.1e-46 188.7 132 77.3
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 1.7e-44 184.5 260 40.4
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 6.1e-42 176.0 99 89.9
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 9.8e-40 168.7 231 39.8
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 2.2e-39 167.5 366 31.1
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 8.3e-39 165.6 178 54.5
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 4.1e-38 163.3 161 45.3
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 1.0e-36 158.7 129 62.0
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 1.7e-36 157.9 106 74.5
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 1.7e-36 157.9 429 30.1
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 6.8e-33 146.0 306 34.3
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 7.5e-32 142.5 140 47.1
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 5.4e-30 136.3 146 52.1
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 3.7e-23 113.6 215 37.7
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 5.4e-22 109.8 68 82.4
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 2.3e-20 104.4 58 91.4
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 3.0e-20 104.0 56 96.4
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 1.9e-14 84.7 111 41.4
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 2.1e-13 81.3 257 29.6
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 9.5e-11 72.4 57 59.6
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 6.2e-10 69.7 99 38.4


User provided reference genes

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