Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 0.0e+00 1251.1 645 100.0
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 1.9e-148 530.4 630 46.5
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 1.2e-137 494.6 565 47.8
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 8.6e-133 478.4 572 46.2
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 1.2e-97 361.7 521 38.6
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.6e-94 351.3 565 36.1
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 6.1e-94 349.4 578 36.2
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 7.9e-94 349.0 475 38.7
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 6.7e-93 345.9 551 34.8
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 1.1e-92 345.1 519 36.4
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 1.5e-92 344.7 595 35.8
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 1.9e-92 344.4 576 34.9
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 2.5e-92 344.0 578 35.6
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 3.3e-92 343.6 551 34.7
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 3.3e-92 343.6 578 35.3
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 4.3e-92 343.2 576 35.1
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 5.7e-92 342.8 510 36.1
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 2.2e-91 340.9 558 35.5
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 1.1e-90 338.6 499 36.5
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 1.8e-90 337.8 565 34.5
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 1.8e-90 337.8 581 33.7
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 5.3e-90 336.3 572 35.7
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 9.1e-90 335.5 554 35.2
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 1.2e-89 335.1 577 34.3
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 2.0e-89 334.3 582 34.0
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 3.4e-89 333.6 548 34.9
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 4.5e-89 333.2 570 34.6
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 5.9e-89 332.8 572 35.1
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 1.7e-88 331.3 469 37.1
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 3.8e-88 330.1 503 35.2
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 6.5e-88 329.3 583 34.1
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 8.5e-88 328.9 564 35.3
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 1.1e-87 328.6 493 36.1
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 1.1e-87 328.6 579 33.9
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.4e-87 328.2 493 35.9
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 1.9e-87 327.8 468 38.2
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 1.9e-87 327.8 564 34.0
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 4.2e-87 326.6 565 34.0
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 4.2e-87 326.6 570 34.0
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 5.5e-87 326.2 582 35.1
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 7.2e-87 325.9 560 35.2
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 9.4e-87 325.5 568 34.3
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 2.7e-86 323.9 494 36.0
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 3.6e-86 323.6 554 35.2
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 4.7e-86 323.2 546 34.6
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 7.9e-86 322.4 589 33.4
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 7.9e-86 322.4 565 34.9
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 1.4e-85 321.6 579 34.4
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 3.0e-85 320.5 553 34.7
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 3.9e-85 320.1 570 35.1
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 5.1e-85 319.7 548 34.3
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 1.5e-84 318.2 577 33.8
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 3.3e-84 317.0 560 33.6
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 1.3e-83 315.1 556 33.8
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 1.7e-83 314.7 575 32.9
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 1.7e-83 314.7 470 35.5
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 2.8e-83 313.9 575 33.2
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 2.8e-83 313.9 568 34.2
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 6.3e-83 312.8 558 33.5
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 1.4e-82 311.6 528 34.1
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 3.1e-82 310.5 577 32.6
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 4.1e-82 310.1 568 33.3
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 5.3e-82 309.7 571 35.0
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 9.1e-82 308.9 566 33.4
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 9.1e-82 308.9 566 33.4
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 9.1e-82 308.9 554 32.3
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 4.5e-81 306.6 562 33.3
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 5.9e-81 306.2 569 33.7
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 7.7e-81 305.8 566 32.7
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 1.0e-80 305.4 569 32.9
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 1.3e-80 305.1 558 33.2
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.7e-80 304.7 562 33.3
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 1.7e-80 304.7 568 34.7
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 3.8e-80 303.5 573 33.0
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.2e-79 300.4 575 33.4
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 3.2e-79 300.4 606 32.2
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 5.5e-79 299.7 590 32.2
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 9.4e-79 298.9 613 31.3
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 1.2e-78 298.5 475 34.5
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 1.6e-78 298.1 548 32.7
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 2.7e-78 297.4 511 32.3
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 4.7e-78 296.6 481 36.0
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 8.0e-78 295.8 564 33.0
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 5.2e-77 293.1 566 32.2
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 8.8e-77 292.4 584 32.2
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 7.4e-76 289.3 571 32.0
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 9.7e-76 288.9 612 31.2
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 1.3e-75 288.5 549 33.5
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 2.8e-75 287.3 565 32.9
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 4.8e-75 286.6 584 29.8
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 1.8e-74 284.6 588 32.3
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 2.0e-73 281.2 589 32.1
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 2.0e-73 281.2 566 31.4
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 4.5e-73 280.0 548 32.3
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 1.0e-72 278.9 575 32.0
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.7e-72 278.1 529 31.8
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 1.7e-72 278.1 575 32.0
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 3.8e-72 276.9 542 32.1
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 5.0e-72 276.6 590 32.0
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 4.2e-71 273.5 589 30.7
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 1.8e-69 268.1 574 30.3
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 1.7e-67 261.5 701 28.5
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 7.0e-66 256.1 559 30.6
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 9.1e-66 255.8 561 30.3
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 2.7e-65 254.2 585 30.1
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 5.9e-65 253.1 468 34.4
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 2.5e-63 247.7 563 30.4
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 4.2e-63 246.9 517 29.6
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 1.4e-61 241.9 302 41.4
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 1.8e-61 241.5 489 33.1
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 2.7e-57 227.6 312 38.1
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 2.3e-53 214.5 495 28.1
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 1.5e-52 211.8 483 29.6
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.4e-50 204.5 373 34.0
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 5.0e-48 196.8 187 48.7
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.4e-44 184.1 363 31.7
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 3.4e-44 184.1 346 33.8
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 9.8e-44 182.6 357 31.9
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.5e-39 167.9 345 31.6
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.7e-38 163.7 360 29.4
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 8.0e-38 162.9 405 29.9
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.3e-37 161.4 367 31.1
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 1.5e-36 158.7 344 31.4
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.6e-36 157.9 364 30.2
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.8e-36 156.8 355 32.1
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 6.8e-29 133.3 365 26.6
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 1.2e-28 132.5 157 38.2
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 3.5e-25 120.9 104 46.2
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.5e-23 115.5 419 24.3
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 3.8e-19 100.9 249 27.3
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 7.1e-18 96.7 154 33.8
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.8e-14 84.7 230 27.0
Cfa027095 Carpinus fangiana HOM05D004724 ORTHO05D122203 6.2e-14 83.6 404 26.2
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 3.1e-13 81.3 230 27.4
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 6.9e-13 80.1 84 39.3
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 1.5e-12 79.0 83 36.1
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 2.0e-12 78.6 80 37.5
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 2.6e-12 78.2 162 34.0
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 4.2e-10 70.9 71 35.2
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 3.5e-09 67.8 150 30.0
Aqoxy4G03187 Aquilegia oxysepala HOM05D000855 ORTHO05D008530 1.7e-08 65.5 150 30.0
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 6.6e-08 63.5 69 39.1
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 6.6e-08 63.5 69 39.1
Lj5g0021887 Lotus japonicus HOM05D000855 ORTHO05D008530 8.7e-08 63.2 150 28.0
Sc20g0004090 Simmondsia chinensis HOM05D000855 ORTHO05D008530 1.1e-07 62.8 348 20.7
DCAR_003849 Daucus carota HOM05D000855 ORTHO05D008530 2.5e-07 61.6 150 28.0
DCAR_009287 Daucus carota HOM05D000855 ORTHO05D008530 2.5e-07 61.6 150 28.0
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 2.5e-07 61.6 150 27.3
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 5.6e-07 60.5 150 27.3
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 5.6e-07 60.5 147 28.6
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 7.3e-07 60.1 165 30.3
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 9.6e-07 59.7 151 30.5
ECA240G0604 Erigeron canadensis HOM05D000162 ORTHO05D000090 9.6e-07 59.7 144 28.5
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.3e-06 59.3 117 31.6
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 1.3e-06 59.3 151 29.1
AT3G09650 Arabidopsis thaliana HOM05D000855 ORTHO05D008530 1.6e-06 58.9 151 29.1
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 1.6e-06 58.9 68 39.7
CAN.G1003.15 Capsicum annuum HOM05D007172 ORTHO05D009267 1.6e-06 58.9 104 30.8
Hma1.2p1_0111F.1_g053850 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 1.6e-06 58.9 180 24.4
Hma1.2p1_0111F.1_g053860 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 1.6e-06 58.9 180 24.4
Dinv35708 Davidia involucrata HOM05D000855 ORTHO05D008530 2.1e-06 58.5 171 25.1
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 2.1e-06 58.5 79 38.0
Prupe.6G241600 Prunus persica HOM05D000855 ORTHO05D008530 3.6e-06 57.8 150 26.0
FAN14G2211 Fragaria x ananassa HOM05D000855 ORTHO05D008530 6.2e-06 57.0 151 27.2
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 6.2e-06 57.0 170 25.9
MSTRG.19138 Avicennia marina HOM05D000855 ORTHO05D008530 8.1e-06 56.6 171 24.6
QL07p045308 Quercus lobata HOM05D000855 ORTHO05D008530 8.1e-06 56.6 150 26.0


User provided reference genes

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