Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 3.2e-308 1060.8 505 100.0
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 2.5e-135 486.5 497 49.5
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 1.2e-113 414.5 500 46.2
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 5.2e-101 372.5 526 39.9
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 1.1e-87 328.2 492 38.6
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 7.1e-82 308.9 496 35.7
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 4.6e-81 306.2 492 37.4
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 1.6e-78 297.7 497 35.4
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 6.2e-78 295.8 501 34.5
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 1.1e-77 295.0 493 34.3
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 2.4e-77 293.9 499 35.9
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 3.1e-77 293.5 485 36.7
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 9.9e-76 288.5 509 36.7
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 9.9e-76 288.5 494 35.2
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 1.1e-74 285.0 494 34.6
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 2.4e-74 283.9 500 34.2
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 4.2e-74 283.1 490 34.7
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 5.5e-74 282.7 497 34.8
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 4.6e-73 279.6 492 33.7
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 1.8e-72 277.7 502 34.7
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 2.3e-72 277.3 454 35.7
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 2.3e-72 277.3 501 33.5
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 3.0e-72 276.9 494 34.0
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 1.1e-71 275.0 491 34.0
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 2.5e-71 273.9 489 34.8
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 3.3e-71 273.5 498 33.1
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 6.2e-70 269.2 494 34.6
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 1.8e-69 267.7 495 32.9
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 2.4e-69 267.3 500 33.4
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 2.4e-69 267.3 492 33.1
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 3.1e-69 266.9 500 32.8
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 9.0e-69 265.4 497 34.2
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 1.2e-68 265.0 496 32.9
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 2.0e-68 264.2 571 30.1
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 7.6e-68 262.3 498 34.3
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 1.7e-67 261.2 489 33.9
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 2.9e-67 260.4 496 32.3
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 4.9e-67 259.6 496 32.5
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 3.2e-66 256.9 490 31.8
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 5.5e-66 256.1 494 32.8
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 5.5e-66 256.1 485 31.8
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 2.7e-65 253.8 494 32.2
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 4.6e-65 253.1 508 34.4
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 1.0e-64 251.9 502 31.5
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 1.0e-64 251.9 503 31.8
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 3.9e-64 250.0 488 33.4
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 1.1e-63 248.4 498 33.3
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 1.1e-63 248.4 498 33.3
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 2.8e-62 243.8 536 31.9
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 4.8e-62 243.0 499 31.7
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 8.2e-62 242.3 394 36.5
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 1.8e-61 241.1 438 34.2
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 9.0e-61 238.8 498 32.1
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 9.0e-61 238.8 484 30.8
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 2.6e-60 237.3 500 30.8
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 4.5e-60 236.5 550 30.7
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 8.5e-59 232.3 489 30.9
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 7.2e-58 229.2 474 32.1
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 9.3e-58 228.8 397 34.3
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.2e-57 228.4 481 31.8
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 1.6e-57 228.0 496 32.1
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 2.7e-57 227.3 477 32.3
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 2.7e-57 227.3 481 31.6
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 3.6e-57 226.9 490 31.8
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 3.6e-57 226.9 481 31.6
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 4.6e-57 226.5 442 33.3
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 6.1e-57 226.1 416 34.6
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 6.1e-57 226.1 505 30.9
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 1.0e-56 225.3 491 32.2
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 2.3e-56 224.2 478 31.8
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 3.0e-56 223.8 500 30.4
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 1.1e-55 221.9 499 30.9
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 1.5e-55 221.5 504 29.2
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 1.9e-55 221.1 490 29.6
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 5.7e-55 219.5 513 29.8
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 8.2e-54 215.7 500 31.6
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 1.8e-53 214.5 510 30.2
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 2.4e-53 214.2 499 29.9
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 4.5e-52 209.9 499 30.7
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 7.7e-52 209.1 496 31.0
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 5.0e-51 206.5 500 30.0
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 5.0e-51 206.5 520 29.8
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 5.0e-51 206.5 492 29.3
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 6.5e-51 206.1 496 30.8
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 6.5e-51 206.1 423 31.9
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 1.4e-50 204.9 495 31.7
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 7.2e-50 202.6 493 30.2
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 7.2e-50 202.6 502 28.9
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 9.4e-50 202.2 493 30.0
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 9.4e-50 202.2 495 31.1
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 1.2e-49 201.8 497 29.2
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 3.6e-49 200.3 497 29.6
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 1.0e-48 198.7 472 30.1
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 1.0e-48 198.7 390 32.1
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 1.8e-48 198.0 510 29.0
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 5.1e-48 196.4 410 31.2
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 6.7e-48 196.1 501 30.1
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 6.7e-48 196.1 478 31.2
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 2.0e-47 194.5 493 28.2
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 2.6e-47 194.1 493 28.4
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 2.6e-47 194.1 397 34.8
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 9.7e-47 192.2 482 27.8
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 2.2e-46 191.0 505 27.9
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 2.2e-46 191.0 500 30.0
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 2.2e-46 191.0 500 30.0
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 2.8e-46 190.7 482 29.7
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 2.8e-46 190.7 265 40.4
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 6.3e-46 189.5 272 38.6
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 1.8e-45 188.0 381 31.5
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 1.8e-45 188.0 334 34.4
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 3.1e-45 187.2 492 29.3
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 1.2e-44 185.3 500 28.4
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 1.5e-44 184.9 458 29.3
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 1.5e-44 184.9 482 29.9
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.0e-44 184.5 528 28.2
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 5.9e-44 183.0 492 29.3
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 2.2e-43 181.0 490 29.4
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 3.8e-43 180.3 489 27.2
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 6.5e-43 179.5 528 27.5
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 8.5e-43 179.1 478 28.9
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 5.5e-42 176.4 493 29.0
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 5.5e-42 176.4 494 28.7
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 1.6e-41 174.9 493 29.2
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 2.1e-41 174.5 498 28.9
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 2.1e-41 174.5 481 27.9
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 1.0e-40 172.2 470 28.1
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 6.7e-40 169.5 491 27.7
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 8.8e-40 169.1 322 33.5
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 5.7e-39 166.4 487 27.1
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 7.0e-37 159.5 338 30.8
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 2.6e-36 157.5 305 34.1
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 3.5e-36 157.1 500 27.6
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 7.7e-36 156.0 493 27.6
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 7.7e-36 156.0 313 30.4
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 2.1e-33 147.9 364 28.8
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 6.1e-33 146.4 502 26.1
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 6.1e-33 146.4 502 26.1
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 2.0e-31 141.4 455 24.2
CBR_g34767 Chara braunii HOM05D004162 ORTHO05D004543 5.7e-31 139.8 295 31.2
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 9.7e-31 139.0 398 26.4
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 2.4e-29 134.4 199 40.2
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 2.2e-27 127.9 338 29.0
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 1.5e-26 125.2 313 31.3
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 7.2e-26 122.9 224 35.3
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 3.6e-25 120.6 158 39.9
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 3.0e-24 117.5 261 30.7
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 3.7e-22 110.5 153 38.6
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 3.5e-20 104.0 261 30.7
MCO05G023 Micromonas commoda HOM05D004162 ORTHO05D004543 4.5e-20 103.6 416 24.8
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 5.9e-20 103.2 180 35.0
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 2.3e-19 101.3 282 29.4
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 3.2e-18 97.4 151 35.8
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 4.2e-18 97.1 454 24.7
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 5.5e-18 96.7 121 41.3
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 5.2e-16 90.1 305 27.5
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 8.3e-14 82.8 193 30.6
Sabra12G0032500 Salix brachista HOM05D004162 ORTHO05D004543 7.3e-10 69.7 84 38.1
CiPaw.09G010700 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.0e-08 65.9 123 27.6
ATR1149G147 Amborella trichopoda HOM05D004162 ORTHO05D004543 1.5e-07 62.0 146 29.5
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 2.2e-06 58.2 76 38.2


User provided reference genes

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