Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 6.9e-170 600.5 295 100.0
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.8e-162 575.9 303 95.4
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 2.9e-160 568.5 303 94.1
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 2.6e-60 236.5 305 45.6
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 1.1e-53 214.5 245 46.5
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 2.7e-49 199.9 224 47.8
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 4.6e-41 172.6 232 39.7
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 3.1e-37 159.8 286 34.6
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 8.5e-35 151.8 276 34.4
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 1.4e-34 151.0 282 34.4
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 5.5e-34 149.1 271 35.1
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 5.5e-34 149.1 281 34.2
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 7.2e-34 148.7 274 35.4
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 9.4e-34 148.3 277 33.9
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 2.1e-33 147.1 275 34.2
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 6.1e-33 145.6 282 35.5
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.0e-32 144.8 282 35.1
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 1.4e-32 144.4 270 34.4
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 2.3e-32 143.7 273 34.4
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 2.3e-32 143.7 275 34.5
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 2.3e-32 143.7 273 34.1
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 3.0e-32 143.3 280 34.3
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 3.9e-32 142.9 275 33.5
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 6.7e-32 142.1 282 34.0
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 6.7e-32 142.1 271 33.9
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 6.7e-32 142.1 277 33.6
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 8.8e-32 141.7 280 33.9
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 8.8e-32 141.7 274 33.6
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 8.8e-32 141.7 286 35.0
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 2.0e-31 140.6 277 32.9
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 2.0e-31 140.6 277 34.3
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 3.3e-31 139.8 274 34.3
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 3.3e-31 139.8 281 33.8
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 4.4e-31 139.4 278 33.8
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 7.4e-31 138.7 274 33.6
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 9.7e-31 138.3 276 32.6
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 1.3e-30 137.9 278 33.1
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 2.2e-30 137.1 274 35.0
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 2.2e-30 137.1 274 35.0
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 2.2e-30 137.1 270 33.3
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 2.2e-30 137.1 270 32.6
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 2.8e-30 136.7 277 33.2
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 6.3e-30 135.6 287 33.4
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 8.2e-30 135.2 280 32.5
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 8.2e-30 135.2 280 32.9
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 8.2e-30 135.2 285 32.6
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 8.2e-30 135.2 275 31.6
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.1e-29 134.8 285 32.3
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 1.4e-29 134.4 285 33.0
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 1.4e-29 134.4 281 33.1
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 1.4e-29 134.4 286 32.2
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 1.8e-29 134.0 277 31.4
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.8e-29 134.0 269 32.0
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 1.8e-29 134.0 281 31.0
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.4e-29 133.7 289 33.2
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.1e-29 133.3 283 33.2
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 7.0e-29 132.1 282 31.2
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 9.1e-29 131.7 282 33.3
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 1.2e-28 131.3 276 33.3
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.5e-28 131.0 313 30.7
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 2.0e-28 130.6 287 29.6
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 2.6e-28 130.2 272 31.6
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 2.6e-28 130.2 277 32.5
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 3.5e-28 129.8 290 32.8
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 3.5e-28 129.8 282 31.9
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 4.5e-28 129.4 273 31.9
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 7.7e-28 128.6 284 33.1
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 7.7e-28 128.6 276 33.0
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 7.7e-28 128.6 302 31.1
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 1.3e-27 127.9 315 29.8
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 1.7e-27 127.5 273 31.5
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 1.7e-27 127.5 290 32.1
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 2.2e-27 127.1 274 31.8
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 3.8e-27 126.3 273 32.6
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 3.8e-27 126.3 273 30.4
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 3.8e-27 126.3 270 31.5
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 5.0e-27 125.9 277 32.1
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 8.5e-27 125.2 272 31.2
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 1.5e-26 124.4 229 33.2
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 1.9e-26 124.0 286 31.5
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 2.5e-26 123.6 273 31.9
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 2.5e-26 123.6 288 31.2
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 4.2e-26 122.9 282 29.8
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 4.2e-26 122.9 282 31.9
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 5.5e-26 122.5 277 32.1
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 9.4e-26 121.7 285 30.2
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 9.4e-26 121.7 274 31.8
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 9.4e-26 121.7 277 30.3
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 1.2e-25 121.3 295 29.8
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 1.6e-25 120.9 248 32.7
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 6.1e-25 119.0 270 30.4
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 1.0e-24 118.2 295 28.1
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 1.0e-24 118.2 295 28.1
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 1.0e-24 118.2 295 28.1
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 1.8e-24 117.5 286 31.8
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 1.8e-24 117.5 283 29.7
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 2.3e-24 117.1 295 30.8
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 3.0e-24 116.7 295 27.8
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 3.0e-24 116.7 295 27.8
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 3.9e-24 116.3 271 29.5
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 2.0e-23 114.0 286 30.8
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.0e-23 114.0 245 33.1
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 2.6e-23 113.6 278 29.9
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 2.2e-22 110.5 278 28.8
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 2.8e-22 110.2 284 28.5
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 6.3e-22 109.0 278 31.3
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 4.1e-21 106.3 161 39.1
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 1.6e-20 104.4 259 29.7
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 2.0e-20 104.0 158 39.2
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 2.6e-20 103.6 282 30.1
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 1.3e-19 101.3 266 28.6
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 2.9e-19 100.1 280 28.9
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 2.5e-18 97.1 285 29.1
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.5e-18 97.1 250 28.8
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 7.2e-18 95.5 132 40.2
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 8.0e-17 92.0 152 35.5
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 3.0e-16 90.1 248 27.4
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 8.8e-16 88.6 276 26.1
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 5.3e-13 79.3 197 32.0
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 4.5e-12 76.3 85 44.7
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 5.9e-12 75.9 247 25.9
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 3.8e-11 73.2 209 27.3
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 5.2e-08 62.8 82 36.6
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 5.2e-08 62.8 82 36.6
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.4e-07 60.1 185 29.7
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 2.2e-06 57.4 107 34.6
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 2.8e-06 57.0 114 30.7
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 6.3e-06 55.8 107 32.7
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 6.3e-06 55.8 164 28.0


User provided reference genes

Program Settings