Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0525 Marchantia polymorpha HOM05D004811 ORTHO05D006888 0.0e+00 1540.8 838 100.0
Pp3c3_19050 Physcomitrium patens HOM05D004811 ORTHO05D006888 1.2e-272 943.3 854 61.7
MBI19_g06604_MAGBIO Magnolia biondii HOM05D004811 ORTHO05D006888 1.7e-250 869.8 821 57.4
Nn4g25146 Nelumbo nucifera HOM05D004811 ORTHO05D006888 2.5e-249 865.9 820 55.6
PSO339G3970 Papaver somniferum HOM05D004811 ORTHO05D006888 6.0e-243 844.7 821 53.6
TWI18G0824 Tripterygium wilfordii HOM05D004811 ORTHO05D006888 4.0e-239 832.0 805 54.8
TAR636G1158 Trochodendron aralioides HOM05D004811 ORTHO05D006888 8.9e-239 830.9 833 52.5
ATR0307G027 Amborella trichopoda HOM05D004811 ORTHO05D006888 2.0e-238 829.7 830 54.8
CSS0026504 Camellia sinensis var. sinensis HOM05D004811 ORTHO05D006888 1.2e-235 820.5 778 54.5
GSVIVG01032296001 Vitis vinifera HOM05D004811 ORTHO05D006888 2.7e-235 819.3 836 53.2
Ciclev10011123m.g Citrus clementina HOM05D004811 ORTHO05D006888 4.6e-235 818.5 820 52.9
Manes.14G160925 Manihot esculenta HOM05D004811 ORTHO05D006888 4.6e-235 818.5 825 53.0
Cc02_g18400 Coffea canephora HOM05D004811 ORTHO05D006888 1.0e-234 817.4 817 53.4
COL.COLO4_04346 Corchorus olitorius HOM05D004811 ORTHO05D006888 5.1e-234 815.1 807 53.7
Dinv04542 Davidia involucrata HOM05D004811 ORTHO05D006888 5.1e-234 815.1 813 53.5
AagrBONN_evm.TU.Sc2ySwM_362.2211 Anthoceros agrestis HOM05D004811 ORTHO05D006888 1.1e-233 813.9 698 62.3
Cfa018260 Carpinus fangiana HOM05D004811 ORTHO05D006888 1.5e-233 813.5 816 53.4
CiPaw.16G007200 Carya illinoinensis HOM05D004811 ORTHO05D006888 1.5e-233 813.5 813 53.1
Rhsim11G0174100 Rhododendron simsii HOM05D004811 ORTHO05D006888 7.3e-233 811.2 806 53.3
Potri.003G106200 Populus trichocarpa HOM05D004811 ORTHO05D006888 9.6e-233 810.8 827 53.8
Oeu013671.1 Olea europaea HOM05D004811 ORTHO05D006888 2.8e-232 809.3 812 53.9
SMO356G0171 Selaginella moellendorffii HOM05D004811 ORTHO05D006888 3.6e-232 808.9 816 53.4
Prupe.1G353000 Prunus persica HOM05D004811 ORTHO05D006888 4.7e-232 808.5 832 52.5
CsaV3_4G031660 Cucumis sativus L. HOM05D004811 ORTHO05D006888 6.2e-232 808.1 805 52.5
Sopen10g022210 Solanum pennellii HOM05D004811 ORTHO05D006888 6.2e-232 808.1 811 53.3
PSO384G3007 Papaver somniferum HOM05D004811 ORTHO05D006888 8.1e-232 807.7 821 51.4
Ca_04451_v3 Cicer arietinum L. HOM05D004811 ORTHO05D006888 1.4e-231 807.0 813 52.8
Glyma.19G064500 Glycine max HOM05D004811 ORTHO05D006888 1.8e-231 806.6 812 52.1
Thecc.10G126600 Theobroma cacao HOM05D004811 ORTHO05D006888 1.8e-231 806.6 809 53.5
PGR044G1247 Punica granatum HOM05D004811 ORTHO05D006888 3.1e-231 805.8 837 51.9
Solyc10g050540.2 Solanum lycopersicum HOM05D004811 ORTHO05D006888 3.1e-231 805.8 812 53.4
Sed0008285 Sechium edule HOM05D004811 ORTHO05D006888 4.0e-231 805.4 806 52.1
Atru.chr1.2074 Acer truncatum HOM05D004811 ORTHO05D006888 6.8e-231 804.7 810 53.1
MSTRG.5372 Avicennia marina HOM05D004811 ORTHO05D006888 6.8e-231 804.7 820 53.0
Psat1g085480 Pisum sativum HOM05D004811 ORTHO05D006888 1.2e-230 803.9 804 52.9
RcHm_v2.0_Chr7g0218051 Rosa chinensis HOM05D004811 ORTHO05D006888 1.2e-230 803.9 810 52.8
Duzib106G1219 Durio zibethinus HOM05D004811 ORTHO05D006888 2.0e-230 803.1 810 53.0
Phvul.004G051000 Phaseolus vulgaris HOM05D004811 ORTHO05D006888 2.6e-230 802.7 809 51.9
VMungo0464G0703 Vigna mungo HOM05D004811 ORTHO05D006888 2.2e-229 799.7 809 52.4
FvH4_5g27050 Fragaria vesca HOM05D004811 ORTHO05D006888 3.8e-229 798.9 812 52.8
arahy.Tifrunner.gnm1.ann1.21VBB5 Arachis hypogaea HOM05D004811 ORTHO05D006888 5.4e-228 795.0 806 51.4
Gorai.N006700 Gossypium raimondii HOM05D004811 ORTHO05D006888 6.0e-227 791.6 808 52.5
Os12g0571900 Oryza sativa ssp. japonica HOM05D004811 ORTHO05D006888 7.8e-227 791.2 806 50.9
Lalb_Chr06g0174221 Lupinus albus HOM05D004811 ORTHO05D006888 1.0e-226 790.8 808 51.5
Eucgr.K03557 Eucalyptus grandis HOM05D004811 ORTHO05D006888 1.9e-225 786.6 835 51.7
Lj5C205G23 Lonicera japonica HOM05D004811 ORTHO05D006888 2.5e-225 786.2 830 50.5
Gohir.D06G178500 Gossypium hirsutum HOM05D004811 ORTHO05D006888 3.3e-225 785.8 808 52.2
CBR_g19801 Chara braunii HOM05D004811 ORTHO05D006888 9.6e-225 784.3 776 53.6
Medtr6g026900 Medicago truncatula HOM05D004811 ORTHO05D006888 1.3e-224 783.9 808 52.1
FAN18G4560 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.6e-224 783.5 815 52.1
Lj2g0018835 Lotus japonicus HOM05D004811 ORTHO05D006888 1.4e-223 780.4 798 51.5
arahy.Tifrunner.gnm1.ann1.BVJW9Q Arachis hypogaea HOM05D004811 ORTHO05D006888 1.8e-223 780.0 825 50.1
SEGI_25586 Sequoiadendron giganteum HOM05D004811 ORTHO05D006888 1.8e-223 780.0 817 51.2
Ah.02g115100 Amaranthus hybridus HOM05D004811 ORTHO05D006888 3.4e-222 775.8 815 51.0
Migut.N01206 Erythranthe guttata HOM05D004811 ORTHO05D006888 5.8e-222 775.0 807 53.0
vmacro10447 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 7.6e-222 774.6 814 52.6
Aqoxy1G00017 Aquilegia oxysepala HOM05D004811 ORTHO05D006888 2.9e-221 772.7 816 50.7
Peaxi162Scf00003g01938 Petunia axillaris HOM05D004811 ORTHO05D006888 8.4e-221 771.2 810 51.6
QL02p036870 Quercus lobata HOM05D004811 ORTHO05D006888 2.4e-220 769.6 511 70.1
FAN04G3268 Fragaria x ananassa HOM05D004811 ORTHO05D006888 3.2e-220 769.2 836 50.8
ECA240G1163 Erigeron canadensis HOM05D004811 ORTHO05D006888 5.4e-220 768.5 813 51.0
QL02p036407 Quercus lobata HOM05D004811 ORTHO05D006888 3.5e-219 765.8 509 69.9
THA.LOC104812205 Tarenaya hassleriana HOM05D004811 ORTHO05D006888 6.0e-219 765.0 807 50.6
Sp1g15840 Schrenkiella parvula HOM05D004811 ORTHO05D006888 6.6e-218 761.5 807 50.9
Gohir.A06G170700 Gossypium hirsutum HOM05D004811 ORTHO05D006888 3.6e-216 755.7 808 51.1
EL10Ac5g11622 Beta vulgaris HOM05D004811 ORTHO05D006888 6.2e-216 755.0 805 51.7
FAN08G1445 Fragaria x ananassa HOM05D004811 ORTHO05D006888 6.2e-216 755.0 851 50.1
HanXRQChr03g0072161 Helianthus annuus HOM05D004811 ORTHO05D006888 3.1e-215 752.7 814 49.6
Carub.0001s1749 Capsella rubella HOM05D004811 ORTHO05D006888 9.0e-215 751.1 807 50.6
MD09G1000100 Malus domestica HOM05D004811 ORTHO05D006888 3.4e-214 749.2 528 66.9
Lsat_1_v5_gn_9_108940 Lactuca sativa HOM05D004811 ORTHO05D006888 1.7e-213 746.9 670 55.8
CARHR018370 Cardamine hirsuta HOM05D004811 ORTHO05D006888 2.2e-213 746.5 810 52.0
A08p30750 Brassica napus HOM05D004811 ORTHO05D006888 2.9e-213 746.1 806 50.0
C08p18170 Brassica napus HOM05D004811 ORTHO05D006888 1.4e-212 743.8 806 49.9
BolC8t49451H Brassica oleracea HOM05D004811 ORTHO05D006888 1.4e-212 743.8 806 49.9
Thhalv10006915m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 3.2e-212 742.7 807 52.7
PSO210G5098 Papaver somniferum HOM05D004811 ORTHO05D006888 2.1e-211 740.0 807 49.1
AL1G30120 Arabidopsis lyrata HOM05D004811 ORTHO05D006888 2.7e-211 739.6 807 49.1
AT1G17760 Arabidopsis thaliana HOM05D004811 ORTHO05D006888 1.0e-210 737.6 807 49.2
MELO3C008873.2 Cucumis melo HOM05D004811 ORTHO05D006888 5.1e-210 735.3 650 56.3
BraA08t35006Z Brassica rapa HOM05D004811 ORTHO05D006888 1.1e-209 734.2 830 48.7
Sc16g0003300 Simmondsia chinensis HOM05D004811 ORTHO05D006888 1.9e-209 733.4 813 49.8
Aa31LG10G8540 Aethionema arabicum HOM05D004811 ORTHO05D006888 3.3e-209 732.6 808 50.9
BcaC07g38890 Brassica carinata HOM05D004811 ORTHO05D006888 6.9e-207 724.9 778 49.5
PSO210G4088 Papaver somniferum HOM05D004811 ORTHO05D006888 1.2e-206 724.2 802 49.5
Nitab4.5_0000876g0200 Nicotiana tabacum HOM05D004811 ORTHO05D006888 4.5e-206 722.2 809 49.7
PSO210G7430 Papaver somniferum HOM05D004811 ORTHO05D006888 7.6e-206 721.5 813 48.8
CDE09G0881 Ceratophyllum demersum HOM05D004811 ORTHO05D006888 2.2e-205 719.9 699 53.8
Haze_17831 Corylus avellana HOM05D004811 ORTHO05D006888 9.3e-204 714.5 822 49.4
Haze_17837 Corylus avellana HOM05D004811 ORTHO05D006888 1.2e-203 714.1 822 49.4
Sabra03G0073000 Salix brachista HOM05D004811 ORTHO05D006888 1.4e-199 700.7 1002 43.0
vmacro02132 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 2.3e-194 683.3 817 48.2
HPP92_012441 Vanilla planifolia HOM05D004811 ORTHO05D006888 1.5e-193 680.6 820 46.5
ClCG04G004820 Citrullus lanatus HOM05D004811 ORTHO05D006888 2.4e-191 673.3 734 49.9
SGA_v2.0_scaffold55G19835 Striga asiatica HOM05D004811 ORTHO05D006888 6.5e-189 665.2 659 52.7
DCAR_022066 Daucus carota HOM05D004811 ORTHO05D006888 2.1e-187 660.2 804 46.5
FAN13G1880 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.4e-178 630.9 696 50.1
AUR62037093 Chenopodium quinoa HOM05D004811 ORTHO05D006888 3.5e-174 616.3 819 44.8
RcHm_v2.0_Chr2g0146051 Rosa chinensis HOM05D004811 ORTHO05D006888 1.6e-171 607.4 690 46.8
Psat2g043000 Pisum sativum HOM05D004811 ORTHO05D006888 1.8e-170 604.0 806 43.5
AUR62036481 Chenopodium quinoa HOM05D004811 ORTHO05D006888 8.2e-168 595.1 808 43.3
FvH4_6g34990 Fragaria vesca HOM05D004811 ORTHO05D006888 1.7e-165 587.4 663 48.9
FAN05G0989 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.1e-164 584.7 661 48.6
FAN14G1986 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.4e-162 577.8 663 48.3
FAN09G3976 Fragaria x ananassa HOM05D004811 ORTHO05D006888 3.0e-162 576.6 663 47.7
Actinidia00514 Actinidia chinensis HOM05D004811 ORTHO05D006888 5.0e-157 559.3 810 43.3
Cpa.g.sc111.49 Carica papaya HOM05D004811 ORTHO05D006888 1.7e-141 507.7 335 68.4
unitig_8.g3575 Utricularia gibba HOM05D004811 ORTHO05D006888 1.8e-138 497.7 810 38.9
HPP92_028180 Vanilla planifolia HOM05D004811 ORTHO05D006888 5.6e-108 396.4 419 48.7
MCO07G203 Micromonas commoda HOM05D004811 ORTHO05D006888 4.0e-106 390.2 697 35.3
PRCOL_00007255 Prasinoderma coloniale HOM05D004811 ORTHO05D006888 1.3e-104 385.2 652 36.5
Nitab4.5_0016907g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 1.1e-98 365.5 511 44.2
Zm00001eb287160 Zea mays HOM05D004811 ORTHO05D006888 1.1e-90 339.0 513 43.7
Hund15153 Selenicereus undatus HOM05D004811 ORTHO05D006888 4.6e-86 323.6 217 71.9
Cre12.g506050 Chlamydomonas reinhardtii HOM05D004811 ORTHO05D006888 1.3e-80 305.4 514 34.4
CAN.G606.11 Capsicum annuum HOM05D004811 ORTHO05D006888 1.1e-79 302.4 237 63.7
CAN.G606.10 Capsicum annuum HOM05D004811 ORTHO05D006888 2.1e-70 271.6 182 68.1
Nitab4.5_0009440g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 1.0e-48 199.5 128 69.5
HPP92_028179 Vanilla planifolia HOM05D004811 ORTHO05D006888 1.2e-44 186.0 175 54.3
Sed0006977 Sechium edule HOM05D004811 ORTHO05D006888 9.1e-42 176.4 128 62.5
Actinidia09194 Actinidia chinensis HOM05D004811 ORTHO05D006888 1.2e-41 176.0 132 62.9
TPR.G33000 Trifolium pratense HOM05D004811 ORTHO05D006888 2.1e-38 165.2 108 68.5
CAN.G606.9 Capsicum annuum HOM05D004811 ORTHO05D006888 7.5e-36 156.8 394 34.5
Sed0024483 Sechium edule HOM05D004811 ORTHO05D006888 6.4e-27 127.1 336 31.5
Actinidia09197 Actinidia chinensis HOM05D004811 ORTHO05D006888 2.7e-17 95.1 127 42.5
Cpa.g.sc111.48 Carica papaya HOM05D004811 ORTHO05D006888 7.8e-17 93.6 108 48.1
Actinidia09195 Actinidia chinensis HOM05D004811 ORTHO05D006888 3.6e-14 84.7 54 63.0
SalBow3G0991 Salvia bowleyana HOM05D004811 ORTHO05D006888 2.6e-12 78.6 75 49.3
QL02p036387 Quercus lobata HOM05D004811 ORTHO05D006888 2.9e-11 75.1 291 29.2
Thhalv10029084m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 6.4e-11 73.9 66 53.0
QL02p036851 Quercus lobata HOM05D004811 ORTHO05D006888 8.3e-11 73.6 288 29.2
Actinidia09206 Actinidia chinensis HOM05D004811 ORTHO05D009793 1.9e-10 72.4 148 35.8
TPR.G39924 Trifolium pratense HOM05D004811 ORTHO05D006888 1.6e-09 69.3 187 31.0
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 3.0e-08 65.1 476 20.8


User provided reference genes

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