Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0445 Marchantia polymorpha HOM05D003997 ORTHO05D002698 2.3e-130 469.2 277 100.0
Pp3c8_16210 Physcomitrium patens HOM05D003997 ORTHO05D002698 1.5e-46 190.7 183 56.8
SEGI_26891 Sequoiadendron giganteum HOM05D003997 ORTHO05D002698 1.2e-43 181.0 201 50.2
AagrBONN_evm.TU.Sc2ySwM_228.3244 Anthoceros agrestis HOM05D003997 ORTHO05D002698 2.0e-41 173.7 198 51.5
Gohir.A01G200200 Gossypium hirsutum HOM05D003997 ORTHO05D002698 9.1e-39 164.9 204 52.0
Gohir.D01G190300 Gossypium hirsutum HOM05D003997 ORTHO05D002698 1.6e-38 164.1 210 51.0
Gorai.002G234000 Gossypium raimondii HOM05D003997 ORTHO05D002698 1.6e-38 164.1 210 51.0
C02p62220 Brassica napus HOM05D003997 ORTHO05D002698 1.3e-37 161.0 204 48.5
BraA02t09164Z Brassica rapa HOM05D003997 ORTHO05D002698 1.3e-37 161.0 204 48.5
Manes.08G035900 Manihot esculenta HOM05D003997 ORTHO05D002698 1.3e-37 161.0 184 53.3
A02p42340 Brassica napus HOM05D003997 ORTHO05D002698 1.7e-37 160.6 204 48.5
Duzib128G1254 Durio zibethinus HOM05D003997 ORTHO05D002698 1.7e-37 160.6 207 49.8
Sp2g25660 Schrenkiella parvula HOM05D003997 ORTHO05D002698 2.2e-37 160.2 204 49.0
Thhalv10003962m.g Eutrema salsugineum HOM05D001982 ORTHO05D003938 2.9e-37 159.8 204 48.5
Potri.016G067100 Populus trichocarpa HOM05D003997 ORTHO05D002698 2.9e-37 159.8 183 53.6
Sabra16G0068400 Salix brachista HOM05D003997 ORTHO05D002698 2.9e-37 159.8 183 53.6
BcaB07g29840 Brassica carinata HOM05D003997 ORTHO05D002698 3.8e-37 159.5 208 48.6
Aqoxy4G00923 Aquilegia oxysepala HOM05D003997 ORTHO05D002698 5.0e-37 159.1 203 47.3
BcaC03g18154 Brassica carinata HOM05D003997 ORTHO05D002698 6.5e-37 158.7 251 41.8
BcaC03g18159 Brassica carinata HOM05D003997 ORTHO05D002698 6.5e-37 158.7 251 41.8
Gohir.A09G132800 Gossypium hirsutum HOM05D003997 ORTHO05D002698 6.5e-37 158.7 204 48.5
PSO675G1782 Papaver somniferum HOM05D003997 ORTHO05D002698 6.5e-37 158.7 191 51.8
PSO732G0769 Papaver somniferum HOM05D003997 ORTHO05D002698 6.5e-37 158.7 191 51.8
Solyc04g017680.3 Solanum lycopersicum HOM05D003997 ORTHO05D002698 6.5e-37 158.7 192 49.5
Sopen04g008760 Solanum pennellii HOM05D003997 ORTHO05D002698 6.5e-37 158.7 192 49.5
vmacro07504 Vaccinium macrocarpon HOM05D003997 ORTHO05D002698 6.5e-37 158.7 183 50.8
BcaC01g02477 Brassica carinata HOM05D003997 ORTHO05D002698 8.5e-37 158.3 207 49.3
C03p64380 Brassica napus HOM05D003997 ORTHO05D002698 8.5e-37 158.3 207 49.3
FvH4_6g20730 Fragaria vesca HOM05D003997 ORTHO05D002698 8.5e-37 158.3 188 50.5
FAN02G0475 Fragaria x ananassa HOM05D003997 ORTHO05D002698 8.5e-37 158.3 188 50.5
FAN14G5955 Fragaria x ananassa HOM05D003997 ORTHO05D002698 8.5e-37 158.3 188 50.5
Rhsim03G0061700 Rhododendron simsii HOM05D003997 ORTHO05D002698 8.5e-37 158.3 197 47.2
THA.LOC109116862 Tarenaya hassleriana HOM05D003997 ORTHO05D002698 8.5e-37 158.3 198 51.0
Aa31LG11G1160 Aethionema arabicum HOM05D003997 ORTHO05D002698 1.1e-36 157.9 201 50.7
Aqoxy1G01867 Aquilegia oxysepala HOM05D003997 ORTHO05D002698 1.1e-36 157.9 185 49.2
RcHm_v2.0_Chr7g0223381 Rosa chinensis HOM05D003997 ORTHO05D002698 1.5e-36 157.5 268 40.3
BcaB02g09651 Brassica carinata HOM05D003997 ORTHO05D002698 1.9e-36 157.1 256 42.2
BraA06t25868Z Brassica rapa HOM05D003997 ORTHO05D002698 1.9e-36 157.1 204 49.5
FAN05G3201 Fragaria x ananassa HOM05D003997 ORTHO05D002698 1.9e-36 157.1 188 50.0
CANSAT35G1644 Cannabis sativa HOM05D003997 ORTHO05D002698 2.5e-36 156.8 203 49.3
Carub.0007s1240 Capsella rubella HOM05D003997 ORTHO05D002698 2.5e-36 156.8 196 50.0
Thecc.05G108200 Theobroma cacao HOM05D003997 ORTHO05D002698 2.5e-36 156.8 206 48.5
GSVIVG01022501001 Vitis vinifera HOM05D003997 ORTHO05D002698 2.5e-36 156.8 186 52.7
BolC2t12279H Brassica oleracea HOM05D003997 ORTHO05D002698 3.2e-36 156.4 204 47.1
BolC3t18692H Brassica oleracea HOM05D003997 ORTHO05D002698 3.2e-36 156.4 208 48.1
RhsimUnG0113000 Rhododendron simsii HOM05D003997 ORTHO05D002698 3.2e-36 156.4 181 49.7
TAR623G1175 Trochodendron aralioides HOM05D003997 ORTHO05D002698 3.2e-36 156.4 181 50.8
Nitab4.5_0014391g0010 Nicotiana tabacum HOM05D003997 ORTHO05D002698 4.2e-36 156.0 192 49.0
Nitab4.5_0021549g0010 Nicotiana tabacum HOM05D003997 ORTHO05D002698 4.2e-36 156.0 192 49.0
RcHm_v2.0_Chr3g0476631 Rosa chinensis HOM05D003997 ORTHO05D002698 4.2e-36 156.0 188 50.0
Atru.chr8.1304 Acer truncatum HOM05D003997 ORTHO05D002698 5.5e-36 155.6 193 49.7
AT4G28360 Arabidopsis thaliana HOM05D003997 ORTHO05D002698 5.5e-36 155.6 196 50.0
QL03p055008 Quercus lobata HOM05D003997 ORTHO05D002698 7.2e-36 155.2 167 54.5
Carub.0001s4137 Capsella rubella HOM05D003997 ORTHO05D002698 9.4e-36 154.8 196 49.5
AL1G60620 Arabidopsis lyrata HOM05D003997 ORTHO05D002698 1.2e-35 154.5 196 49.0
COL.COLO4_29520 Corchorus olitorius HOM05D003997 ORTHO05D002698 1.2e-35 154.5 197 49.2
unitig_8.g3554 Utricularia gibba HOM05D003997 ORTHO05D002698 1.6e-35 154.1 207 46.4
Nn2g14387 Nelumbo nucifera HOM05D003997 ORTHO05D002698 2.1e-35 153.7 191 49.7
AT1G52370 Arabidopsis thaliana HOM05D003997 ORTHO05D002698 2.7e-35 153.3 196 48.5
Nitab4.5_0000082g0420 Nicotiana tabacum HOM05D003997 ORTHO05D002698 2.7e-35 153.3 194 48.5
Nitab4.5_0009392g0020 Nicotiana tabacum HOM05D003997 ORTHO05D002698 2.7e-35 153.3 194 48.5
Oeu020171.1 Olea europaea HOM05D003997 ORTHO05D002698 3.6e-35 152.9 181 52.5
SalBow5G1795 Salvia bowleyana HOM05D003997 ORTHO05D002698 3.6e-35 152.9 183 51.4
Sed0019356 Sechium edule HOM05D003997 ORTHO05D002698 3.6e-35 152.9 189 50.3
VMungo1383G3620 Vigna mungo HOM05D003997 ORTHO05D002698 3.6e-35 152.9 199 48.7
CiPaw.08G072600 Carya illinoinensis HOM05D003997 ORTHO05D002698 4.7e-35 152.5 159 56.0
CiPaw.15G185300 Carya illinoinensis HOM05D003997 ORTHO05D002698 4.7e-35 152.5 166 55.4
Hma1.2p1_2082F.1_g313570 Hydrangea macrophylla HOM05D003997 ORTHO05D002698 4.7e-35 152.5 195 48.2
QL07p027111 Quercus lobata HOM05D003997 ORTHO05D002698 4.7e-35 152.5 159 55.3
SGA_v2.0_scaffold392G50675 Striga asiatica HOM05D003997 ORTHO05D002698 6.1e-35 152.1 194 49.0
Actinidia37765 Actinidia chinensis HOM05D003997 ORTHO05D002698 8.0e-35 151.8 194 48.5
Ciclev10013709m.g Citrus clementina HOM05D003997 ORTHO05D002698 8.0e-35 151.8 192 50.5
Cc06_g06830 Coffea canephora HOM05D003997 ORTHO05D002698 1.0e-34 151.4 194 48.5
Dinv25067 Davidia involucrata HOM05D003997 ORTHO05D002698 1.4e-34 151.0 195 48.7
Lj2g0021502 Lotus japonicus HOM05D003997 ORTHO05D002698 1.8e-34 150.6 205 46.8
Os01g0616500 Oryza sativa ssp. japonica HOM05D003997 ORTHO05D002698 1.8e-34 150.6 199 48.7
Zm00001eb095190 Zea mays HOM05D003997 ORTHO05D002698 1.8e-34 150.6 198 48.5
CSS0008111 Camellia sinensis var. sinensis HOM05D003997 ORTHO05D002698 2.3e-34 150.2 198 47.0
Migut.O00931 Erythranthe guttata HOM05D003997 ORTHO05D002698 2.3e-34 150.2 179 49.7
MSTRG.10419 Avicennia marina HOM05D003997 ORTHO05D002698 3.0e-34 149.8 194 47.9
Migut.L01852 Erythranthe guttata HOM05D003997 ORTHO05D002698 3.0e-34 149.8 181 49.7
Phvul.008G070600 Phaseolus vulgaris HOM05D003997 ORTHO05D002698 3.0e-34 149.8 203 46.3
TWI53G0181 Tripterygium wilfordii HOM05D003997 ORTHO05D002698 3.0e-34 149.8 186 48.9
Cfa020087 Carpinus fangiana HOM05D003997 ORTHO05D002698 4.0e-34 149.4 193 49.2
Psat6g101760 Pisum sativum HOM05D003997 ORTHO05D002698 4.0e-34 149.4 206 48.5
EL10Ac7g16269 Beta vulgaris HOM05D003997 ORTHO05D002698 5.2e-34 149.1 205 46.3
CSS0023244 Camellia sinensis var. sinensis HOM05D003997 ORTHO05D002698 5.2e-34 149.1 186 48.4
Prupe.7G091500 Prunus persica HOM05D003997 ORTHO05D002698 5.2e-34 149.1 198 47.0
MD14G1042400 Malus domestica HOM05D003997 ORTHO05D002698 6.7e-34 148.7 202 44.6
Peaxi162Scf00002g03712 Petunia axillaris HOM05D003997 ORTHO05D002698 6.7e-34 148.7 204 45.1
Cpa.g.sc17.105 Carica papaya HOM05D003997 ORTHO05D002698 8.8e-34 148.3 199 47.7
Phvul.008G070900 Phaseolus vulgaris HOM05D003997 ORTHO05D002698 1.2e-33 147.9 201 45.8
Medtr1g040020 Medicago truncatula HOM05D003997 ORTHO05D002698 1.5e-33 147.5 209 46.9
Lalb_Chr16g0386841 Lupinus albus HOM05D003997 ORTHO05D002698 2.0e-33 147.1 204 46.1
TWI74G0953 Tripterygium wilfordii HOM05D003997 ORTHO05D002698 2.0e-33 147.1 186 47.8
ClCG01G012560 Citrullus lanatus HOM05D003997 ORTHO05D002698 2.6e-33 146.7 187 48.1
Glyma.18G227500 Glycine max HOM05D003997 ORTHO05D002698 2.6e-33 146.7 203 45.8
Ca_12342_v3 Cicer arietinum L. HOM05D003997 ORTHO05D002698 3.3e-33 146.4 201 47.3
Rhsim03G0061200 Rhododendron simsii HOM05D003997 ORTHO05D002698 3.3e-33 146.4 167 49.1
Ah.15g098860 Amaranthus hybridus HOM05D003997 ORTHO05D002698 4.4e-33 146.0 211 45.0
MBI19_g30302_MAGBIO Magnolia biondii HOM05D003997 ORTHO05D002698 5.7e-33 145.6 147 56.5
DCAR_013448 Daucus carota HOM05D003997 ORTHO05D002698 7.5e-33 145.2 182 47.8
ECA234G3695 Erigeron canadensis HOM05D003997 ORTHO05D002698 7.5e-33 145.2 192 45.8
SMO228G0153 Selaginella moellendorffii HOM05D003997 ORTHO05D002698 7.5e-33 145.2 193 45.6
Lsat_1_v5_gn_4_40160 Lactuca sativa HOM05D003997 ORTHO05D002698 1.3e-32 144.4 205 43.4
Lj3A736G17 Lonicera japonica HOM05D003997 ORTHO05D002698 1.3e-32 144.4 195 46.7
MELO3C004760.2 Cucumis melo HOM05D003997 ORTHO05D002698 1.7e-32 144.1 186 48.4
Lalb_Chr05g0221411 Lupinus albus HOM05D003997 ORTHO05D002698 1.7e-32 144.1 205 46.3
CsaV3_1G014590 Cucumis sativus L. HOM05D003997 ORTHO05D002698 2.2e-32 143.7 186 48.4
HanXRQChr17g0562561 Helianthus annuus HOM05D003997 ORTHO05D002698 2.2e-32 143.7 197 44.2
Sc06g0010610 Simmondsia chinensis HOM05D003997 ORTHO05D002698 3.7e-32 142.9 205 47.3
Eucgr.H00426 Eucalyptus grandis HOM05D003997 ORTHO05D002698 4.8e-32 142.5 181 46.4
Glyma.09G264400 Glycine max HOM05D003997 ORTHO05D002698 8.2e-32 141.7 205 45.4
ATR0730G052 Amborella trichopoda HOM05D003997 ORTHO05D002698 1.1e-31 141.4 183 49.2
CARHR236070 Cardamine hirsuta HOM05D003997 ORTHO05D002698 2.4e-31 140.2 255 38.4
HPP92_017694 Vanilla planifolia HOM05D003997 ORTHO05D002698 3.1e-31 139.8 180 47.8
SHI07013 Sapria himalayana HOM05D003997 ORTHO05D002698 9.1e-31 138.3 148 54.7
AUR62017549 Chenopodium quinoa HOM05D003997 ORTHO05D002698 1.2e-30 137.9 205 43.9
AUR62015091 Chenopodium quinoa HOM05D003997 ORTHO05D002698 1.6e-30 137.5 205 43.9
Gorai.006G147800 Gossypium raimondii HOM05D003997 ORTHO05D002698 5.9e-30 135.6 148 50.7
TPR.G30221 Trifolium pratense HOM05D003997 ORTHO05D002698 1.1e-28 131.3 143 53.1
Hund20962 Selenicereus undatus HOM05D003997 ORTHO05D002698 9.4e-28 128.3 152 50.7
arahy.Tifrunner.gnm1.ann1.2ECS7R Arachis hypogaea HOM05D003997 ORTHO05D002698 2.3e-26 123.6 156 47.4
arahy.Tifrunner.gnm1.ann1.7B1PRD Arachis hypogaea HOM05D003997 ORTHO05D002698 2.3e-26 123.6 156 47.4
arahy.Tifrunner.gnm1.ann1.RN4U32 Arachis hypogaea HOM05D003997 ORTHO05D002698 2.3e-26 123.6 156 47.4
arahy.Tifrunner.gnm1.ann1.W16VAI Arachis hypogaea HOM05D003997 ORTHO05D002698 2.3e-26 123.6 156 47.4
arahy.Tifrunner.gnm1.ann1.ZAYD4R Arachis hypogaea HOM05D003997 ORTHO05D002698 2.3e-26 123.6 156 47.4
arahy.Tifrunner.gnm1.ann1.4LVT1K Arachis hypogaea HOM05D003997 ORTHO05D002698 4.0e-26 122.9 156 47.4
arahy.Tifrunner.gnm1.ann1.4C6UH4 Arachis hypogaea HOM05D003997 ORTHO05D002698 5.2e-26 122.5 156 46.8
CDE02G4432 Ceratophyllum demersum HOM05D003997 ORTHO05D002698 5.7e-25 119.0 133 54.9
arahy.Tifrunner.gnm1.ann1.RXW997 Arachis hypogaea HOM05D003997 ORTHO05D002698 2.8e-24 116.7 158 44.9
CARHR060900 Cardamine hirsuta HOM05D003997 ORTHO05D002698 9.1e-23 111.7 206 39.8
Prupe.7G027600 Prunus persica HOM05D003997 ORTHO05D002698 1.6e-19 100.9 188 37.8
MD06G1011100 Malus domestica HOM05D003997 ORTHO05D002698 6.1e-19 99.0 175 39.4
CAN.G1237.44 Capsicum annuum HOM05D003997 ORTHO05D002698 1.0e-18 98.2 201 38.3
CBR_g23715 Chara braunii HOM05D003997 ORTHO05D002698 1.8e-18 97.4 194 41.8
Nitab4.5_0007356g0020 Nicotiana tabacum HOM05D003997 ORTHO05D002698 1.8e-18 97.4 101 56.4
Haze_20104 Corylus avellana HOM05D003997 ORTHO05D002698 2.3e-18 97.1 115 50.4
MD03G1130200 Malus domestica HOM05D003997 ORTHO05D002698 3.0e-18 96.7 171 40.4
PGR142G0313 Punica granatum HOM05D003997 ORTHO05D002698 4.0e-18 96.3 111 50.5
PGSC0003DMG400034098 Solanum tuberosum HOM05D003997 ORTHO05D002698 6.8e-18 95.5 155 40.6
RhsimUnG0113200 Rhododendron simsii HOM05D003997 ORTHO05D002698 1.5e-17 94.4 98 52.0
Phvul.008G071600 Phaseolus vulgaris HOM05D003997 ORTHO05D002698 3.4e-17 93.2 142 43.7
RhsimUnG0112900 Rhododendron simsii HOM05D003997 ORTHO05D002698 4.4e-17 92.8 94 52.1
Rhsim03G0061600 Rhododendron simsii HOM05D003997 ORTHO05D002698 9.8e-17 91.7 101 50.5
RcHm_v2.0_Chr4g0386011 Rosa chinensis HOM05D003997 ORTHO05D002698 9.8e-17 91.7 151 37.7
MD12G1043300 Malus domestica HOM05D003997 ORTHO05D002698 2.8e-16 90.1 101 50.5
MD12G1043400 Malus domestica HOM05D003997 ORTHO05D002698 2.8e-16 90.1 120 43.3
FvH4_4g00560 Fragaria vesca HOM05D003997 ORTHO05D002698 3.7e-16 89.7 151 38.4
FAN12G0168 Fragaria x ananassa HOM05D003997 ORTHO05D002698 3.7e-16 89.7 151 38.4
MCO07G289 Micromonas commoda HOM05D003997 ORTHO05D002698 8.3e-16 88.6 106 47.2
FAN12G3167 Fragaria x ananassa HOM05D003997 ORTHO05D002698 1.0e-13 81.6 138 38.4
Rhsim03G0060600 Rhododendron simsii HOM05D003997 ORTHO05D002698 7.3e-12 75.5 110 45.5
Solyc03g044440.2 Solanum lycopersicum HOM05D003997 ORTHO05D002698 7.3e-12 75.5 150 37.3
Sopen03g008580 Solanum pennellii HOM05D003997 ORTHO05D002698 7.3e-12 75.5 199 32.2
Psat6g152720 Pisum sativum HOM05D003997 ORTHO05D002698 2.1e-11 73.9 90 48.9
Phvul.010G107200 Phaseolus vulgaris HOM05D003997 ORTHO05D002698 1.8e-10 70.9 113 45.1
FAN12G2504 Fragaria x ananassa HOM05D003997 ORTHO05D002698 6.8e-10 68.9 125 38.4
BolSC101t60211H Brassica oleracea HOM05D003997 ORTHO05D002698 1.5e-09 67.8 68 51.5
FAN17G2484 Fragaria x ananassa HOM05D003997 ORTHO05D002698 1.5e-09 67.8 125 38.4
Rhsim03G0060300 Rhododendron simsii HOM05D003997 ORTHO05D002698 5.7e-09 65.9 133 33.8
FAN22G0547 Fragaria x ananassa HOM05D003997 ORTHO05D002698 1.7e-08 64.3 125 36.8
Gohir.D09G129100 Gossypium hirsutum HOM05D003997 ORTHO05D002698 1.7e-08 64.3 75 46.7
Duzib093G0527 Durio zibethinus HOM05D003997 ORTHO05D002698 8.3e-08 62.0 96 43.8
MCO09G075 Micromonas commoda HOM05D002578 ORTHO05D002698 1.1e-07 61.6 161 28.0
Psat1g052200 Pisum sativum HOM05D002578 ORTHO05D002698 5.4e-07 59.3 113 31.9
Cre13.g580850 Chlamydomonas reinhardtii HOM05D002578 ORTHO05D002698 3.5e-06 56.6 116 31.9


User provided reference genes

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