Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0409 Marchantia polymorpha HOM05D003950 ORTHO05D004697 1.2e-76 290.8 170 100.0
AagrBONN_evm.TU.Sc2ySwM_344.2926 Anthoceros agrestis HOM05D003950 ORTHO05D004697 2.5e-42 176.8 138 63.0
Pp3c19_3550 Physcomitrium patens HOM05D003950 ORTHO05D004697 5.6e-42 175.6 133 65.4
Cpa.g.sc161.15 Carica papaya HOM05D003950 ORTHO05D004697 3.1e-40 169.9 163 63.2
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 4.0e-40 169.5 166 60.8
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 4.0e-40 169.5 166 61.4
Ca_25687_v3 Cicer arietinum L. HOM05D003950 ORTHO05D004697 1.2e-39 167.9 163 63.8
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 1.5e-39 167.5 167 62.9
ATR0697G272 Amborella trichopoda HOM05D003950 ORTHO05D004697 5.8e-39 165.6 170 58.8
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 5.8e-39 165.6 167 59.9
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 9.8e-39 164.9 166 60.8
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 1.3e-38 164.5 170 59.4
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 2.9e-38 163.3 163 64.4
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 3.7e-38 162.9 170 62.9
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 6.4e-38 162.2 163 62.0
CANSAT78G2427 Cannabis sativa HOM05D003950 ORTHO05D004697 2.4e-37 160.2 166 61.4
ECA248G3680 Erigeron canadensis HOM05D003950 ORTHO05D004697 2.4e-37 160.2 170 61.8
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 2.4e-37 160.2 166 58.4
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 2.4e-37 160.2 170 59.4
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 2.4e-37 160.2 163 62.0
Nn6g32388 Nelumbo nucifera HOM05D003950 ORTHO05D004697 3.2e-37 159.8 163 63.2
MD14G1005800 Malus domestica HOM05D003950 ORTHO05D004697 4.1e-37 159.5 164 56.7
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 4.1e-37 159.5 170 60.0
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 5.4e-37 159.1 163 60.7
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 5.4e-37 159.1 169 59.2
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 5.4e-37 159.1 163 62.6
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 7.1e-37 158.7 166 57.8
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 7.1e-37 158.7 163 61.3
PSO339G3097 Papaver somniferum HOM05D003950 ORTHO05D004697 9.2e-37 158.3 167 59.3
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 1.2e-36 157.9 170 60.6
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.2e-36 157.9 163 57.7
SMO239G0197 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 1.2e-36 157.9 158 58.9
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 1.6e-36 157.5 169 58.0
EL10Ac1g01242 Beta vulgaris HOM05D003950 ORTHO05D004697 2.1e-36 157.1 137 58.4
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 2.1e-36 157.1 167 56.9
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 2.1e-36 157.1 163 61.3
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 2.1e-36 157.1 163 62.0
CANSAT78G2379 Cannabis sativa HOM05D003950 ORTHO05D004697 2.7e-36 156.8 166 58.4
Gorai.004G251700 Gossypium raimondii HOM05D003950 ORTHO05D004697 2.7e-36 156.8 163 60.7
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 2.7e-36 156.8 170 60.6
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 3.5e-36 156.4 170 58.8
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 3.5e-36 156.4 169 58.6
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 4.6e-36 156.0 169 59.2
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 4.6e-36 156.0 184 54.9
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 4.6e-36 156.0 163 58.9
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 4.6e-36 156.0 171 58.5
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 6.0e-36 155.6 168 58.9
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 6.0e-36 155.6 175 57.7
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 6.0e-36 155.6 170 58.2
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 6.0e-36 155.6 168 59.5
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 6.0e-36 155.6 171 60.2
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 6.0e-36 155.6 163 60.7
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 7.8e-36 155.2 163 61.3
CDE07G1488 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 7.8e-36 155.2 163 61.3
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 1.0e-35 154.8 166 57.8
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 1.3e-35 154.5 169 58.0
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 3.0e-35 153.3 137 53.3
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 3.0e-35 153.3 174 56.3
Atru.chr2.1469 Acer truncatum HOM05D003950 ORTHO05D004697 3.9e-35 152.9 169 56.2
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 6.6e-35 152.1 163 58.9
Gohir.D13G167037 Gossypium hirsutum HOM05D003950 ORTHO05D004697 6.6e-35 152.1 141 54.6
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 6.6e-35 152.1 134 56.7
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 8.6e-35 151.8 136 55.1
Sc07g0007800 Simmondsia chinensis HOM05D003950 ORTHO05D004697 8.6e-35 151.8 130 56.9
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 8.6e-35 151.8 163 60.1
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 1.5e-34 151.0 170 58.8
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 1.5e-34 151.0 166 56.6
FvH4_1g28440 Fragaria vesca HOM05D003950 ORTHO05D004697 1.5e-34 151.0 166 56.6
FAN28G2715 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.5e-34 151.0 166 56.6
A03p14340 Brassica napus HOM05D003950 ORTHO05D004697 3.3e-34 149.8 164 58.5
BraA03t10731Z Brassica rapa HOM05D003950 ORTHO05D004697 3.3e-34 149.8 164 58.5
FAN23G1412 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.3e-34 149.4 166 56.6
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 7.3e-34 148.7 170 58.2
BolC3t14092H Brassica oleracea HOM05D003950 ORTHO05D004697 1.2e-33 147.9 165 58.2
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 1.2e-33 147.9 141 55.3
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 1.2e-33 147.9 169 55.6
Zm00001eb403220 Zea mays HOM05D003950 ORTHO05D004697 1.6e-33 147.5 166 56.6
AUR62027738 Chenopodium quinoa HOM05D003950 ORTHO05D004697 2.8e-33 146.7 123 56.9
unitig_899.g15193 Utricularia gibba HOM05D003950 ORTHO05D004697 2.8e-33 146.7 178 57.9
C03p16720 Brassica napus HOM05D003950 ORTHO05D004697 3.6e-33 146.4 163 57.7
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 3.6e-33 146.4 162 56.2
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 4.7e-33 146.0 162 58.6
Sp6g16940 Schrenkiella parvula HOM05D003950 ORTHO05D004697 6.2e-33 145.6 162 58.0
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 8.1e-33 145.2 162 59.3
BcaC01g06337 Brassica carinata HOM05D003950 ORTHO05D004697 8.1e-33 145.2 132 57.6
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 1.4e-32 144.4 140 54.3
AUR62018910 Chenopodium quinoa HOM05D003950 ORTHO05D004697 4.0e-32 142.9 162 45.7
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 4.0e-32 142.9 165 58.8
Aqoxy1G00539 Aquilegia oxysepala HOM05D003950 ORTHO05D004697 5.2e-32 142.5 128 56.2
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 5.2e-32 142.5 162 57.4
CDE06G0557 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 2.0e-31 140.6 123 58.5
Potri.013G062500 Populus trichocarpa HOM05D003950 ORTHO05D004697 2.0e-31 140.6 125 56.8
HPP92_027838 Vanilla planifolia HOM05D003950 ORTHO05D004697 2.6e-31 140.2 129 53.5
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 4.4e-31 139.4 129 55.8
HanXRQChr11g0348211 Helianthus annuus HOM05D003950 ORTHO05D004697 5.8e-31 139.0 140 52.9
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 1.7e-30 137.5 127 55.1
Os03g0157500 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 6.4e-30 135.6 132 53.0
CSS0011085 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 8.4e-30 135.2 155 59.4
HanXRQChr11g0348221 Helianthus annuus HOM05D003950 ORTHO05D004697 8.4e-30 135.2 141 51.8
MD03G1043800 Malus domestica HOM05D003950 ORTHO05D004697 8.4e-30 135.2 127 53.5
Aa31LG2G1860 Aethionema arabicum HOM05D003950 ORTHO05D004697 1.1e-29 134.8 160 56.2
FAN17G2887 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.1e-29 132.9 131 51.9
MD03G1043900 Malus domestica HOM05D003950 ORTHO05D004697 1.6e-28 131.0 127 52.8
PSO384G0364 Papaver somniferum HOM05D003950 ORTHO05D004697 1.6e-28 131.0 88 69.3
Manes.09G138000 Manihot esculenta HOM05D003950 ORTHO05D004697 6.0e-28 129.0 137 62.8
Nitab4.5_0002131g0010 Nicotiana tabacum HOM05D003950 ORTHO05D004697 1.0e-27 128.3 148 57.4
MD11G1047200 Malus domestica HOM05D003950 ORTHO05D004697 1.3e-27 127.9 137 51.8
Nitab4.5_0000121g0060 Nicotiana tabacum HOM05D003950 ORTHO05D004697 1.3e-27 127.9 161 54.0
MD03G1047000 Malus domestica HOM05D003950 ORTHO05D004697 2.3e-27 127.1 137 53.3
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 3.0e-27 126.7 129 52.7
Duzib177G0442 Durio zibethinus HOM05D003950 ORTHO05D004697 6.6e-27 125.6 95 60.0
Prupe.6G036000 Prunus persica HOM05D003950 ORTHO05D004697 1.9e-26 124.0 139 48.9
Lj1A1064G32 Lonicera japonica HOM05D003950 ORTHO05D004697 3.6e-25 119.8 197 37.1
Sabra13G0055700 Salix brachista HOM05D003950 ORTHO05D004697 4.0e-24 116.3 104 56.7
FAN25G1848 Fragaria x ananassa HOM05D003950 ORTHO05D004697 5.8e-23 112.5 137 45.3
RcHm_v2.0_Chr5g0074451 Rosa chinensis HOM05D003950 ORTHO05D004697 5.8e-23 112.5 136 47.8
SEGI_22625 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 9.9e-23 111.7 111 49.5
MSTRG.10428 Avicennia marina HOM05D003950 ORTHO05D004697 1.7e-22 110.9 133 57.1
HanXRQChr11g0347991 Helianthus annuus HOM05D003950 ORTHO05D004697 2.2e-22 110.5 108 52.8
HanXRQChr11g0347961 Helianthus annuus HOM05D003950 ORTHO05D004697 3.8e-22 109.8 107 52.3
Os10g0438000 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 8.4e-22 108.6 132 45.5
FAN19G2544 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.4e-21 107.1 84 60.7
arahy.Tifrunner.gnm1.ann1.Y4106G Arachis hypogaea HOM05D003950 ORTHO05D004697 4.2e-21 106.3 85 60.0
Prupe.7G009900 Prunus persica HOM05D003950 ORTHO05D004697 4.2e-21 106.3 117 61.5
FAN21G2807 Fragaria x ananassa HOM05D003950 ORTHO05D004697 7.1e-21 105.5 136 41.9
HanXRQChr11g0347951 Helianthus annuus HOM05D003950 ORTHO05D004697 9.3e-21 105.1 112 50.9
vmacro07558 Vaccinium macrocarpon HOM05D003950 ORTHO05D004697 1.2e-20 104.8 117 61.5
arahy.Tifrunner.gnm1.ann1.NAY1Y6 Arachis hypogaea HOM05D003950 ORTHO05D004697 1.6e-20 104.4 85 58.8
TAR623G1392 Trochodendron aralioides HOM05D003950 ORTHO05D004697 2.1e-20 104.0 116 57.8
FvH4_3g41510 Fragaria vesca HOM05D003950 ORTHO05D004697 3.5e-20 103.2 134 45.5
FAN11G3501 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.5e-20 103.2 134 45.5
Pp3c22_8540 Physcomitrium patens HOM05D003950 ORTHO05D004697 3.5e-20 103.2 132 45.5
Dinv05569 Davidia involucrata HOM05D003950 ORTHO05D004697 6.0e-20 102.4 117 59.8
FvH4_4g13720 Fragaria vesca HOM05D003950 ORTHO05D004697 7.8e-20 102.1 133 44.4
Pp3c19_20680 Physcomitrium patens HOM05D003950 ORTHO05D004697 7.8e-20 102.1 119 46.2
FvH4_3g41490 Fragaria vesca HOM05D003950 ORTHO05D004697 3.9e-19 99.8 128 45.3
HanXRQChr11g0348281 Helianthus annuus HOM05D003950 ORTHO05D004697 5.1e-19 99.4 85 56.5
arahy.Tifrunner.gnm1.ann1.045CRL Arachis hypogaea HOM05D003950 ORTHO05D004697 8.7e-19 98.6 95 52.6
HanXRQChr11g0348261 Helianthus annuus HOM05D003950 ORTHO05D004697 1.1e-18 98.2 141 43.3
HanXRQChr11g0347971 Helianthus annuus HOM05D003950 ORTHO05D004697 7.3e-18 95.5 97 51.5
SEGI_36015 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 9.6e-18 95.1 96 52.1
AUR62043941 Chenopodium quinoa HOM05D003950 ORTHO05D004697 2.1e-17 94.0 102 45.1
FAN11G2374 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.1e-17 94.0 139 43.9
arahy.Tifrunner.gnm1.ann1.F7GYSS Arachis hypogaea HOM05D003950 ORTHO05D004697 2.8e-17 93.6 73 60.3
Gohir.A08G219522 Gossypium hirsutum HOM05D003950 ORTHO05D004697 3.6e-17 93.2 144 41.0
Pp3c22_8500 Physcomitrium patens HOM05D003950 ORTHO05D004697 6.9e-16 89.0 128 43.8
RcHm_v2.0_Chr5g0074461 Rosa chinensis HOM05D003950 ORTHO05D004697 1.2e-15 88.2 89 52.8
RcHm_v2.0_Chr5g0074441 Rosa chinensis HOM05D003950 ORTHO05D004697 2.0e-15 87.4 98 48.0
FAN13G1636 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.4e-15 86.7 140 38.6
FAN05G4552 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.5e-15 86.3 137 41.6
FvH4_6g31590 Fragaria vesca HOM05D003950 ORTHO05D004697 5.8e-15 85.9 103 47.6
MD03G1035600 Malus domestica HOM05D003950 ORTHO05D004697 6.4e-14 82.4 83 55.4
Pp3c22_8490 Physcomitrium patens HOM05D003950 ORTHO05D004697 3.2e-13 80.1 119 41.2
Pp3c3_29270 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.0e-11 75.1 107 39.3
CBR_g23172 Chara braunii HOM05D003950 ORTHO05D004697 1.3e-11 74.7 111 43.2
arahy.Tifrunner.gnm1.ann1.ZT0L0Q Arachis hypogaea HOM05D003950 ORTHO05D004697 6.7e-11 72.4 55 60.0
arahy.Tifrunner.gnm1.ann1.FD1PW0 Arachis hypogaea HOM05D000879 ORTHO05D004697 1.5e-10 71.2 55 58.2
Cre13.g585250 Chlamydomonas reinhardtii HOM05D003950 ORTHO05D004697 1.6e-09 67.8 64 53.1
FAN13G2151 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.6e-09 67.8 78 47.4
Pp3c22_3970 Physcomitrium patens HOM05D003950 ORTHO05D004697 6.2e-09 65.9 144 34.7
SMO356G0208 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 8.1e-09 65.5 113 37.2
Pp3c17_20390 Physcomitrium patens HOM05D003950 ORTHO05D004697 3.1e-08 63.5 113 38.1
SEGI_15476 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 7.6e-07 58.9 130 36.9
FvH4_3g41240 Fragaria vesca HOM05D003950 ORTHO05D004697 1.3e-06 58.2 79 39.2
FAN11G3220 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.3e-06 58.2 79 39.2


User provided reference genes

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