Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 9.3e-165 583.6 314 100.0
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 9.0e-51 204.9 282 44.7
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 2.0e-50 203.8 246 48.0
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 3.3e-37 159.8 245 41.2
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 2.3e-30 137.1 245 35.9
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 3.0e-30 136.7 227 35.2
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 4.3e-29 132.9 244 34.8
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 9.7e-29 131.7 213 37.1
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 9.7e-29 131.7 244 34.8
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 3.7e-28 129.8 244 33.6
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 6.3e-28 129.0 244 35.2
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 8.2e-28 128.6 244 35.7
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 1.1e-27 128.3 212 35.4
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 1.8e-27 127.5 212 36.3
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 3.1e-27 126.7 231 32.0
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 5.3e-27 125.9 244 33.2
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 1.2e-26 124.8 211 33.6
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 1.2e-26 124.8 211 33.6
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 1.5e-26 124.4 250 32.4
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 2.0e-26 124.0 215 34.4
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 2.0e-26 124.0 212 35.4
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 2.6e-26 123.6 244 32.8
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 2.6e-26 123.6 241 32.0
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 3.4e-26 123.2 244 34.4
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 3.4e-26 123.2 242 32.2
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 4.5e-26 122.9 211 36.0
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 4.5e-26 122.9 295 32.5
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 7.7e-26 122.1 243 33.7
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 1.0e-25 121.7 246 32.1
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 1.3e-25 121.3 210 34.8
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.3e-25 121.3 311 30.2
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 1.7e-25 120.9 244 33.6
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 2.2e-25 120.6 242 31.8
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.2e-25 120.6 242 31.8
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 2.2e-25 120.6 236 31.8
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.9e-25 120.2 211 36.5
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.9e-25 120.2 244 32.8
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 5.0e-25 119.4 240 32.1
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 5.0e-25 119.4 211 36.5
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 6.5e-25 119.0 211 35.1
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 8.5e-25 118.6 211 35.1
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.4e-24 117.9 237 30.0
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 1.9e-24 117.5 236 33.5
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.5e-24 117.1 210 33.8
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 2.5e-24 117.1 245 34.3
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 3.2e-24 116.7 238 34.0
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 3.2e-24 116.7 245 34.3
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 5.5e-24 115.9 236 32.6
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 5.5e-24 115.9 210 33.3
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 7.2e-24 115.5 210 32.9
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 7.2e-24 115.5 244 32.8
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 7.2e-24 115.5 218 35.8
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 9.4e-24 115.2 246 30.5
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 1.2e-23 114.8 185 37.3
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.2e-23 114.8 244 30.7
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 1.2e-23 114.8 259 31.7
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 1.2e-23 114.8 259 31.7
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 1.2e-23 114.8 259 31.7
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 1.6e-23 114.4 222 35.1
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 2.7e-23 113.6 314 30.3
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 2.7e-23 113.6 245 35.1
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 2.7e-23 113.6 320 30.9
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 3.6e-23 113.2 236 32.2
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 3.6e-23 113.2 244 32.4
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 3.6e-23 113.2 247 34.0
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 4.6e-23 112.8 210 31.0
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 4.6e-23 112.8 213 34.7
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 4.6e-23 112.8 256 31.6
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 4.6e-23 112.8 247 34.0
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 7.9e-23 112.1 172 38.4
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.0e-22 111.7 244 29.5
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 1.0e-22 111.7 336 30.7
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 1.4e-22 111.3 210 29.5
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.8e-22 110.9 236 30.9
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 2.3e-22 110.5 236 30.9
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 2.3e-22 110.5 251 31.9
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 3.0e-22 110.2 308 29.2
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 3.9e-22 109.8 244 31.1
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.9e-22 109.8 208 34.1
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 6.7e-22 109.0 244 29.5
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 8.8e-22 108.6 236 29.2
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 1.1e-21 108.2 236 29.2
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 1.1e-21 108.2 236 31.8
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 1.5e-21 107.8 239 30.5
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 2.6e-21 107.1 217 31.8
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 3.3e-21 106.7 244 29.5
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 5.7e-21 105.9 282 30.5
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 9.7e-21 105.1 236 28.8
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 9.7e-21 105.1 172 36.6
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 9.7e-21 105.1 244 29.1
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 1.3e-20 104.8 247 29.6
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 1.3e-20 104.8 247 30.0
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 1.7e-20 104.4 204 29.9
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 1.7e-20 104.4 313 29.7
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 1.7e-20 104.4 224 32.6
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 2.2e-20 104.0 312 29.5
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 2.8e-20 103.6 210 32.9
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 3.7e-20 103.2 309 28.2
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 6.3e-20 102.4 226 32.7
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 1.8e-19 100.9 289 27.7
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 1.8e-19 100.9 341 27.9
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 1.8e-19 100.9 241 32.0
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 3.1e-19 100.1 244 31.1
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 1.5e-18 97.8 200 32.5
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 2.0e-18 97.4 266 29.3
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 5.9e-18 95.9 244 29.1
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 7.7e-18 95.5 261 28.0
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 7.7e-18 95.5 219 32.0
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 1.0e-17 95.1 141 40.4
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.2e-17 94.0 312 28.8
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 5.0e-17 92.8 250 27.6
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 6.5e-17 92.4 226 30.1
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 2.5e-16 90.5 359 25.9
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 5.5e-16 89.4 294 28.2
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 7.2e-16 89.0 261 26.8
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 7.2e-16 89.0 239 25.9
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 2.1e-15 87.4 244 27.5
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 7.4e-13 79.0 138 31.9
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 3.7e-12 76.6 133 37.6
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 1.8e-11 74.3 156 30.8
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 3.1e-11 73.6 175 30.3
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 4.1e-11 73.2 311 25.7
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.9e-09 67.0 122 36.1
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 2.9e-09 67.0 264 25.8
MCO01G198 Micromonas commoda HOM05D004374 ORTHO05D005430 3.8e-09 66.6 145 32.4
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 5.0e-09 66.2 134 29.9
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 6.5e-09 65.9 154 29.2
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 1.9e-08 64.3 209 26.8
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 1.2e-07 61.6 108 32.4
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 3.6e-07 60.1 178 28.1
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.0e-06 58.5 87 37.9


User provided reference genes

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