Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 1.6e-228 795.8 432 100.0
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 4.1e-86 322.8 469 44.3
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 2.7e-82 310.1 387 48.1
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 1.8e-81 307.4 391 44.8
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 1.7e-79 300.8 392 45.9
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 1.1e-78 298.1 392 43.9
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 9.1e-78 295.0 390 43.1
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 2.0e-77 293.9 390 44.6
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 3.5e-77 293.1 390 44.4
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 4.5e-77 292.7 391 45.0
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 1.9e-75 287.3 390 44.6
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 1.9e-75 287.3 391 43.5
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 4.2e-75 286.2 392 44.6
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 7.2e-75 285.4 390 43.1
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 7.2e-75 285.4 408 41.9
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 9.4e-75 285.0 395 41.5
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 1.2e-74 284.6 390 43.3
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 1.6e-74 284.3 394 43.7
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 2.7e-74 283.5 386 42.7
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 2.7e-74 283.5 408 42.2
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 4.7e-74 282.7 372 45.2
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 4.7e-74 282.7 390 43.1
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 4.7e-74 282.7 390 43.1
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 4.7e-74 282.7 390 42.8
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 8.0e-74 282.0 390 43.1
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 2.3e-73 280.4 408 42.4
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 2.3e-73 280.4 389 42.9
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 3.0e-73 280.0 396 44.2
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 6.7e-73 278.9 390 42.6
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 8.8e-73 278.5 390 41.3
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 8.8e-73 278.5 388 41.0
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 8.8e-73 278.5 390 42.1
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 1.5e-72 277.7 389 44.2
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 1.5e-72 277.7 397 44.3
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 2.6e-72 276.9 390 42.3
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 3.3e-72 276.6 396 43.7
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 3.3e-72 276.6 390 43.3
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 5.7e-72 275.8 393 42.5
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 7.4e-72 275.4 391 41.7
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 7.4e-72 275.4 385 42.1
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 9.7e-72 275.0 387 42.9
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.3e-71 274.6 382 42.7
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 1.3e-71 274.6 394 42.6
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 1.7e-71 274.2 388 41.8
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 2.2e-71 273.9 394 43.1
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 2.2e-71 273.9 392 41.6
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 2.2e-71 273.9 384 43.5
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 2.2e-71 273.9 390 43.3
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 2.2e-71 273.9 397 43.8
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 3.7e-71 273.1 395 41.5
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 4.8e-71 272.7 385 44.4
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 4.8e-71 272.7 398 41.2
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 6.3e-71 272.3 400 40.8
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 8.2e-71 271.9 395 42.5
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 1.4e-70 271.2 390 42.3
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 1.4e-70 271.2 384 40.1
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 1.8e-70 270.8 392 41.3
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 2.4e-70 270.4 390 42.3
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 2.4e-70 270.4 384 42.7
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 3.1e-70 270.0 393 41.2
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 3.1e-70 270.0 386 44.3
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 5.3e-70 269.2 401 41.4
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 1.6e-69 267.7 396 41.4
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 1.6e-69 267.7 391 41.2
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 2.0e-69 267.3 390 41.0
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 2.0e-69 267.3 390 41.5
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 2.0e-69 267.3 395 43.0
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 3.5e-69 266.5 389 41.6
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 3.5e-69 266.5 392 42.3
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 4.5e-69 266.2 397 41.3
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 4.5e-69 266.2 391 42.2
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.0e-68 265.0 395 42.8
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 1.3e-68 264.6 395 43.0
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 6.5e-68 262.3 394 41.9
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 6.5e-68 262.3 423 39.7
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 1.9e-67 260.8 423 40.4
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 2.7e-66 256.9 392 41.3
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 4.7e-66 256.1 449 38.8
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 6.1e-66 255.8 400 41.8
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 1.8e-65 254.2 396 40.9
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 2.3e-65 253.8 391 40.9
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 3.0e-65 253.4 394 39.6
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 4.0e-65 253.1 421 39.9
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 5.2e-65 252.7 390 40.8
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 1.5e-64 251.1 405 40.5
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 3.4e-64 250.0 390 41.0
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 3.4e-64 250.0 438 41.3
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 1.7e-63 247.7 385 41.6
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 2.8e-63 246.9 398 40.2
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 2.8e-63 246.9 392 41.3
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 8.3e-63 245.4 395 40.0
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 8.3e-63 245.4 390 38.7
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 1.8e-62 244.2 402 39.8
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 4.1e-62 243.0 391 40.4
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 5.4e-62 242.7 376 43.9
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 9.1e-62 241.9 387 38.0
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 3.5e-61 240.0 410 39.3
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 4.5e-61 239.6 394 40.1
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 1.0e-60 238.4 363 41.9
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 1.3e-60 238.0 396 39.1
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 1.7e-60 237.7 393 39.7
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 2.2e-60 237.3 405 40.0
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 3.8e-60 236.5 396 38.9
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 8.5e-60 235.3 396 37.9
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 1.1e-59 235.0 450 37.6
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 1.1e-59 235.0 396 38.4
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 4.7e-58 229.6 379 43.8
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 6.1e-58 229.2 378 43.9
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 3.4e-56 223.4 399 39.1
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 1.3e-55 221.5 399 38.8
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 1.7e-55 221.1 398 38.2
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 1.8e-54 217.6 398 37.9
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 1.8e-54 217.6 398 37.9
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 2.0e-53 214.2 398 37.4
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 5.9e-53 212.6 401 37.4
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 6.8e-49 199.1 393 35.9
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 2.7e-45 187.2 379 34.6
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 4.7e-42 176.4 239 43.9
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 4.0e-41 173.3 238 40.8
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 2.0e-40 171.0 340 38.2
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 8.3e-39 165.6 389 31.9
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.3e-31 141.7 303 33.7
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 6.4e-31 139.4 185 40.5
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 3.6e-26 123.6 287 32.1
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 2.3e-25 120.9 454 27.8
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 1.7e-23 114.8 432 29.2
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 2.2e-23 114.4 122 50.8
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 5.4e-22 109.8 124 49.2
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 6.0e-21 106.3 185 36.8
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 3.9e-20 103.6 533 26.6
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 1.8e-17 94.7 164 37.2
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 2.5e-11 74.3 56 62.5
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 9.6e-11 72.4 56 62.5
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 1.6e-10 71.6 62 53.2
Cfa025636 Carpinus fangiana HOM05D002744 ORTHO05D006546 3.1e-09 67.4 430 23.0
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 5.3e-09 66.6 59 52.5
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 3.4e-08 63.9 117 36.8
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 9.9e-08 62.4 50 60.0


User provided reference genes

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