Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0001s0011 Marchantia polymorpha HOM05D003918 ORTHO05D004494 1.5e-49 199.1 94 100.0
Pp3c14_11680 Physcomitrium patens HOM05D003918 ORTHO05D004494 2.6e-38 161.8 94 81.9
Pp3c2_6200 Physcomitrium patens HOM05D003918 ORTHO05D004494 4.5e-38 161.0 94 79.8
HPP92_026243 Vanilla planifolia HOM05D003918 ORTHO05D004494 8.4e-37 156.8 87 82.8
ECA248G3596 Erigeron canadensis HOM05D003918 ORTHO05D004494 1.1e-36 156.4 80 88.8
HanXRQChr01g0019451 Helianthus annuus HOM05D003918 ORTHO05D004494 1.1e-36 156.4 83 85.5
Lsat_1_v5_gn_1_64981 Lactuca sativa HOM05D003918 ORTHO05D004494 1.1e-36 156.4 83 85.5
Oeu040442.1 Olea europaea HOM05D003918 ORTHO05D004494 1.1e-36 156.4 86 83.7
HanXRQChr11g0346091 Helianthus annuus HOM05D003918 ORTHO05D004494 1.4e-36 156.0 83 85.5
Lalb_Chr01g0004631 Lupinus albus HOM05D003918 ORTHO05D004494 1.9e-36 155.6 92 82.6
PSO801G0480 Papaver somniferum HOM05D003918 ORTHO05D004494 1.9e-36 155.6 81 86.4
SEGI_19027 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 1.9e-36 155.6 79 86.1
SEGI_17224 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 2.4e-36 155.2 78 88.5
ECA233G3711 Erigeron canadensis HOM05D003918 ORTHO05D004494 3.2e-36 154.8 86 82.6
SMO116G0276 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 3.2e-36 154.8 82 85.4
THA.LOC104826394 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 3.2e-36 154.8 83 84.3
Ciclev10029696m.g Citrus clementina HOM05D003918 ORTHO05D004494 4.2e-36 154.5 80 87.5
PSO339G4781 Papaver somniferum HOM05D003918 ORTHO05D004494 4.2e-36 154.5 87 85.1
Sc21g0004230 Simmondsia chinensis HOM05D003918 ORTHO05D004494 4.2e-36 154.5 86 84.9
Dinv16240 Davidia involucrata HOM05D003918 ORTHO05D004494 5.4e-36 154.1 80 87.5
CSS0025262 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 7.1e-36 153.7 84 85.7
CSS0028017 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 7.1e-36 153.7 84 85.7
CiPaw.13G144800 Carya illinoinensis HOM05D003918 ORTHO05D004494 7.1e-36 153.7 80 87.5
Cc01_g10200 Coffea canephora HOM05D003918 ORTHO05D004494 7.1e-36 153.7 80 87.5
COL.COLO4_19215 Corchorus olitorius HOM05D003918 ORTHO05D004494 7.1e-36 153.7 80 87.5
DCAR_018757 Daucus carota HOM05D003918 ORTHO05D004494 7.1e-36 153.7 92 81.5
Glyma.11G192100 Glycine max HOM05D003918 ORTHO05D004494 7.1e-36 153.7 80 87.5
Glyma.12G082300 Glycine max HOM05D003918 ORTHO05D004494 7.1e-36 153.7 80 87.5
Gohir.A05G085800 Gossypium hirsutum HOM05D003918 ORTHO05D004494 7.1e-36 153.7 80 87.5
Gohir.D05G087700 Gossypium hirsutum HOM05D003918 ORTHO05D004494 7.1e-36 153.7 80 87.5
Gorai.009G089700 Gossypium raimondii HOM05D003918 ORTHO05D004494 7.1e-36 153.7 80 87.5
Hma1.2p1_0051F.1_g029570 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 7.1e-36 153.7 80 87.5
Lj3g0024072 Lotus japonicus HOM05D003918 ORTHO05D004494 7.1e-36 153.7 80 87.5
Oeu007309.2 Olea europaea HOM05D003918 ORTHO05D004494 7.1e-36 153.7 83 84.3
Phvul.011G086900 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 7.1e-36 153.7 80 87.5
Thecc.09G297000 Theobroma cacao HOM05D003918 ORTHO05D004494 7.1e-36 153.7 80 87.5
CSS0003214 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 9.3e-36 153.3 83 88.0
CSS0049251 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 9.3e-36 153.3 83 88.0
Ca_10762_v3 Cicer arietinum L. HOM05D003918 ORTHO05D004494 9.3e-36 153.3 84 86.9
Gohir.A07G105200 Gossypium hirsutum HOM05D003918 ORTHO05D004494 9.3e-36 153.3 80 87.5
Gohir.D07G109300 Gossypium hirsutum HOM05D003918 ORTHO05D004494 9.3e-36 153.3 80 87.5
Gorai.001G117400 Gossypium raimondii HOM05D003918 ORTHO05D004494 9.3e-36 153.3 80 87.5
Sed0005005 Sechium edule HOM05D003918 ORTHO05D004494 9.3e-36 153.3 88 83.0
TWI79G0503 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 9.3e-36 153.3 80 87.5
TWI79G0939 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 9.3e-36 153.3 80 87.5
Zm00001eb402980 Zea mays HOM05D003918 ORTHO05D004494 9.3e-36 153.3 87 83.9
Aqoxy1G01058 Aquilegia oxysepala HOM05D003918 ORTHO05D004494 1.2e-35 152.9 80 86.2
Medtr4g057040 Medicago truncatula HOM05D003918 ORTHO05D004494 1.2e-35 152.9 80 87.5
Sc21g0004490 Simmondsia chinensis HOM05D003918 ORTHO05D004494 1.2e-35 152.9 86 83.7
Eucgr.J00392 Eucalyptus grandis HOM05D003918 ORTHO05D004494 1.6e-35 152.5 80 86.2
FvH4_3g30520 Fragaria vesca HOM05D003918 ORTHO05D004494 1.6e-35 152.5 80 86.2
FAN11G2739 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.6e-35 152.5 80 86.2
FAN21G0274 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.6e-35 152.5 80 86.2
Manes.04G012300 Manihot esculenta HOM05D003918 ORTHO05D004494 1.6e-35 152.5 80 86.2
Manes.11G152900 Manihot esculenta HOM05D003918 ORTHO05D004494 1.6e-35 152.5 80 86.2
Nitab4.5_0000173g0230 Nicotiana tabacum HOM05D003918 ORTHO05D004494 1.6e-35 152.5 80 86.2
Oeu007724.1 Olea europaea HOM05D003918 ORTHO05D004494 1.6e-35 152.5 80 87.5
Peaxi162Scf00983g00019 Petunia axillaris HOM05D003918 ORTHO05D004494 1.6e-35 152.5 80 86.2
QL01p014884 Quercus lobata HOM05D003918 ORTHO05D004494 1.6e-35 152.5 80 86.2
Rhsim01G0210200 Rhododendron simsii HOM05D003918 ORTHO05D004494 1.6e-35 152.5 87 83.9
RcHm_v2.0_Chr5g0056481 Rosa chinensis HOM05D003918 ORTHO05D004494 1.6e-35 152.5 80 86.2
Sopen11g026220 Solanum pennellii HOM05D003918 ORTHO05D004494 1.6e-35 152.5 80 86.2
PGSC0003DMG402000458 Solanum tuberosum HOM05D003918 ORTHO05D004494 1.6e-35 152.5 80 86.2
THA.LOC104815736 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 1.6e-35 152.5 82 82.9
AL4G22250 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 2.1e-35 152.1 80 86.2
Haze_03482 Corylus avellana HOM05D003918 ORTHO05D004494 2.1e-35 152.1 80 86.2
FAN25G0673 Fragaria x ananassa HOM05D003918 ORTHO05D004494 2.1e-35 152.1 80 86.2
PGR119G0927 Punica granatum HOM05D003918 ORTHO05D004494 2.1e-35 152.1 80 86.2
TAR633G2652 Trochodendron aralioides HOM05D003918 ORTHO05D004494 2.1e-35 152.1 80 86.2
vmacro03250 Vaccinium macrocarpon HOM05D003918 ORTHO05D004494 2.1e-35 152.1 80 86.2
AT2G27960 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 2.7e-35 151.8 80 85.0
CAN.G546.56 Capsicum annuum HOM05D003918 ORTHO05D004494 2.7e-35 151.8 80 86.2
CiPaw.14G106800 Carya illinoinensis HOM05D003918 ORTHO05D004494 2.7e-35 151.8 80 86.2
Thhalv10017678m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 2.7e-35 151.8 80 85.0
Actinidia07191 Actinidia chinensis HOM05D001217 ORTHO05D004494 3.5e-35 151.4 80 86.2
CDE09G0194 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 3.5e-35 151.4 83 81.9
Psat0ss2518g0280 Pisum sativum HOM05D003918 ORTHO05D004494 3.5e-35 151.4 84 85.7
Hund00834 Selenicereus undatus HOM05D003918 ORTHO05D004494 3.5e-35 151.4 80 86.2
Aa31LG5G8120 Aethionema arabicum HOM05D003918 ORTHO05D004494 4.6e-35 151.0 80 85.0
AL4G22230 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 4.6e-35 151.0 80 85.0
AT2G27970 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 4.6e-35 151.0 80 85.0
MBI17_g16530_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 4.6e-35 151.0 81 85.2
TAR623G0966 Trochodendron aralioides HOM05D003918 ORTHO05D004494 4.6e-35 151.0 82 85.4
unitig_899.g14962 Utricularia gibba HOM05D003918 ORTHO05D004494 4.6e-35 151.0 80 86.2
CANSAT64G2716 Cannabis sativa HOM05D003918 ORTHO05D004494 6.0e-35 150.6 80 86.2
MELO3C026958.2 Cucumis melo HOM05D003918 ORTHO05D004494 6.0e-35 150.6 89 80.9
Duzib168G2331 Durio zibethinus HOM05D003918 ORTHO05D004494 6.0e-35 150.6 80 86.2
GSVIVG01031454001 Vitis vinifera HOM05D003918 ORTHO05D004494 6.0e-35 150.6 80 86.2
ClCG01G013880 Citrullus lanatus HOM05D003918 ORTHO05D004494 7.9e-35 150.2 80 85.0
Haze_23526 Corylus avellana HOM05D001217 ORTHO05D001097 7.9e-35 150.2 80 85.0
Lsat_1_v5_gn_6_43541 Lactuca sativa HOM05D003918 ORTHO05D004494 7.9e-35 150.2 80 83.8
Os03g0146300 Oryza sativa ssp. japonica HOM05D003918 ORTHO05D004494 7.9e-35 150.2 75 90.7
TWI31G0950 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 7.9e-35 150.2 80 86.2
TAR369G0366 Trochodendron aralioides HOM05D003918 ORTHO05D004494 7.9e-35 150.2 84 84.5
BcaB03g11846 Brassica carinata HOM05D003918 ORTHO05D004494 1.0e-34 149.8 82 82.9
ClCG02G021690 Citrullus lanatus HOM05D003918 ORTHO05D004494 1.0e-34 149.8 78 87.2
Lj1A213T32 Lonicera japonica HOM05D003918 ORTHO05D004494 1.0e-34 149.8 80 85.0
CARHR120670 Cardamine hirsuta HOM05D003918 ORTHO05D004494 1.3e-34 149.4 80 83.8
Oeu008363.1 Olea europaea HOM05D003918 ORTHO05D004494 1.3e-34 149.4 80 83.8
Potri.009G004000 Populus trichocarpa HOM05D003918 ORTHO05D004494 1.3e-34 149.4 80 83.8
Carub.0004s0872 Capsella rubella HOM05D003918 ORTHO05D004494 1.8e-34 149.1 80 85.0
Dinv29385 Davidia involucrata HOM05D003918 ORTHO05D004494 1.8e-34 149.1 89 80.9
PSO339G2710 Papaver somniferum HOM05D003918 ORTHO05D004494 1.8e-34 149.1 75 88.0
Rhsim13G0101600 Rhododendron simsii HOM05D003918 ORTHO05D004494 1.8e-34 149.1 80 85.0
Ah.01g016010 Amaranthus hybridus HOM05D003918 ORTHO05D004494 2.3e-34 148.7 82 82.9
EL10Ac9g21015 Beta vulgaris HOM05D003918 ORTHO05D004494 2.3e-34 148.7 80 85.0
Carub.0004s0873 Capsella rubella HOM05D003918 ORTHO05D004494 2.3e-34 148.7 75 88.0
DCAR_015501 Daucus carota HOM05D003918 ORTHO05D004494 2.3e-34 148.7 85 84.7
Sabra09G0001700 Salix brachista HOM05D003918 ORTHO05D004494 2.3e-34 148.7 80 83.8
ATR0043G026 Amborella trichopoda HOM05D003918 ORTHO05D004494 3.0e-34 148.3 84 82.1
C03p85930 Brassica napus HOM05D003918 ORTHO05D004494 3.0e-34 148.3 82 81.7
CsaV3_1G014150 Cucumis sativus L. HOM05D003918 ORTHO05D004494 3.0e-34 148.3 80 85.0
Prupe.6G113800 Prunus persica HOM05D003918 ORTHO05D004494 3.0e-34 148.3 80 85.0
Sed0024739 Sechium edule HOM05D003918 ORTHO05D004494 3.0e-34 148.3 80 85.0
CAN.G246.3 Capsicum annuum HOM05D003918 ORTHO05D004494 3.9e-34 147.9 80 82.5
AUR62041324 Chenopodium quinoa HOM05D003918 ORTHO05D004494 3.9e-34 147.9 80 83.8
Eucgr.B03920 Eucalyptus grandis HOM05D003918 ORTHO05D004494 5.1e-34 147.5 82 85.4
MD03G1128000 Malus domestica HOM05D003918 ORTHO05D004494 5.1e-34 147.5 86 81.4
MD11G1149400 Malus domestica HOM05D003918 ORTHO05D004494 5.1e-34 147.5 86 81.4
Nitab4.5_0003880g0020 Nicotiana tabacum HOM05D003918 ORTHO05D004494 5.1e-34 147.5 76 86.8
Oeu000602.1 Olea europaea HOM05D003918 ORTHO05D004494 5.1e-34 147.5 80 82.5
PGSC0003DMG400018822 Solanum tuberosum HOM05D003918 ORTHO05D004494 5.1e-34 147.5 80 85.0
CARHR120680 Cardamine hirsuta HOM05D003918 ORTHO05D004494 6.7e-34 147.1 78 84.6
Nn2g13876 Nelumbo nucifera HOM05D003918 ORTHO05D004494 6.7e-34 147.1 78 84.6
SalBow6G1569 Salvia bowleyana HOM05D003918 ORTHO05D004494 6.7e-34 147.1 80 83.8
Thhalv10017487m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 8.7e-34 146.7 80 83.8
Lalb_Chr03g0027731 Lupinus albus HOM05D003918 ORTHO05D004494 8.7e-34 146.7 80 83.8
Sp4g10790 Schrenkiella parvula HOM05D003918 ORTHO05D004494 8.7e-34 146.7 80 82.5
FAN16G1510 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.5e-33 146.0 86 80.2
PGR102G3373 Punica granatum HOM05D003918 ORTHO05D004494 1.9e-33 145.6 75 88.0
A08p17020 Brassica napus HOM05D003918 ORTHO05D004494 2.5e-33 145.2 82 79.3
BraA08t33664Z Brassica rapa HOM05D003918 ORTHO05D004494 2.5e-33 145.2 82 79.3
Potri.004G217500 Populus trichocarpa HOM05D003918 ORTHO05D004494 2.5e-33 145.2 79 84.8
Zm00001eb003750 Zea mays HOM05D003918 ORTHO05D004494 2.5e-33 145.2 85 78.8
Lalb_Chr19g0136871 Lupinus albus HOM05D003918 ORTHO05D004494 3.3e-33 144.8 75 88.0
Cpa.g.sc47.8 Carica papaya HOM05D003918 ORTHO05D004494 4.3e-33 144.4 80 81.2
Migut.D02301 Erythranthe guttata HOM05D003918 ORTHO05D004494 4.3e-33 144.4 80 83.8
BcaC01g00919 Brassica carinata HOM05D003918 ORTHO05D004494 7.4e-33 143.7 86 79.1
BcaB06g28178 Brassica carinata HOM05D003918 ORTHO05D004494 9.6e-33 143.3 74 85.1
BcaC02g08219 Brassica carinata HOM05D003918 ORTHO05D004494 9.6e-33 143.3 74 85.1
A04p21230 Brassica napus HOM05D003918 ORTHO05D004494 9.6e-33 143.3 74 85.1
C04p57080 Brassica napus HOM05D003918 ORTHO05D004494 9.6e-33 143.3 74 85.1
BolC4t27242H Brassica oleracea HOM05D003918 ORTHO05D004494 9.6e-33 143.3 74 85.1
MELO3C004864.2 Cucumis melo HOM05D003918 ORTHO05D004494 6.2e-32 140.6 101 72.3
Hma1.2p1_0772F.1_g215980 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 8.1e-32 140.2 96 71.9
Cre03.g180350 Chlamydomonas reinhardtii HOM05D003918 ORTHO05D004494 1.1e-31 139.8 74 83.8
Glyma.12G083700 Glycine max HOM05D003918 ORTHO05D004494 2.4e-31 138.7 82 78.0
SalBow3G4245 Salvia bowleyana HOM05D003918 ORTHO05D004494 3.1e-31 138.3 75 84.0
SEGI_02290 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 9.0e-31 136.7 76 85.5
MBI16_g13165_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.2e-30 136.3 92 70.7
MCO11G605 Micromonas commoda HOM05D003918 ORTHO05D004494 1.5e-30 136.0 68 85.3
Phvul.011G088400 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 2.0e-30 135.6 83 74.7
PRCOL_00005401 Prasinoderma coloniale HOM05D003918 ORTHO05D004494 2.6e-30 135.2 83 72.3
SMO367G0337 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 1.3e-26 122.9 68 76.5
CDE02G4651 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 1.8e-26 122.5 83 73.5
MBI11_g44590_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.6e-24 115.9 64 81.2
Zm00001eb012500 Zea mays HOM05D003918 ORTHO05D004494 1.6e-24 115.9 77 72.7
CsaV3_6G014430 Cucumis sativus L. HOM05D003918 ORTHO05D004494 2.8e-24 115.2 72 76.4
CBR_g2791 Chara braunii HOM05D003918 ORTHO05D004494 2.4e-23 112.1 58 82.8
BcaB02g10127 Brassica carinata HOM05D003918 ORTHO05D004494 3.0e-18 95.1 76 57.9
Actinidia24153 Actinidia chinensis HOM05D003918 ORTHO05D004494 1.1e-17 93.2 55 80.0
TPR.G31695 Trifolium pratense HOM05D003918 ORTHO05D004494 2.5e-17 92.0 48 87.5
ATR0760G002 Amborella trichopoda HOM05D003918 ORTHO05D004494 6.3e-16 87.4 46 82.6
AagrBONN_evm.TU.Sc2ySwM_117.701 Anthoceros agrestis HOM05D005424 ORTHO05D006726 1.2e-14 83.2 46 80.4
Actinidia03687 Actinidia chinensis HOM05D003918 ORTHO05D004494 1.3e-13 79.7 44 81.8
Thecc.08G095400 Theobroma cacao HOM05D003918 ORTHO05D004494 3.8e-13 78.2 58 63.8
Nn2g10486 Nelumbo nucifera HOM05D003918 ORTHO05D004494 6.5e-13 77.4 38 86.8
BcaC05g28675 Brassica carinata HOM05D003918 ORTHO05D004494 8.5e-13 77.0 39 82.1
BolC5t33525H Brassica oleracea HOM05D003918 ORTHO05D004494 8.5e-13 77.0 39 82.1
Zm00001eb191010 Zea mays HOM05D003918 ORTHO05D004494 7.2e-12 73.9 92 46.7
Nn6g35195 Nelumbo nucifera HOM05D003918 ORTHO05D004494 2.7e-11 72.0 37 89.2
Migut.N02540 Erythranthe guttata HOM05D003918 ORTHO05D004494 3.6e-11 71.6 47 74.5
CSS0049200 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.0e-10 70.1 59 59.3
SGA_v2.0_scaffold50G18575 Striga asiatica HOM05D003918 ORTHO05D004494 1.8e-10 69.3 41 78.0
Ah.03g143830 Amaranthus hybridus HOM05D003918 ORTHO05D004494 6.7e-10 67.4 38 84.2
CSS0021242 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.5e-09 66.2 66 53.0
Gohir.A02G090001 Gossypium hirsutum HOM05D003918 ORTHO05D004494 4.8e-08 61.2 38 76.3
Nn1g02037 Nelumbo nucifera HOM05D003918 ORTHO05D004494 8.2e-08 60.5 51 54.9
Nn4g23314 Nelumbo nucifera HOM05D003918 ORTHO05D004494 1.4e-07 59.7 29 82.8
Ah.09g226860 Amaranthus hybridus HOM05D003918 ORTHO05D004494 1.2e-06 56.6 34 82.4


User provided reference genes

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