Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G108300 Manihot esculenta HOM05D006277 ORTHO05D007673 1.1e-208 729.9 411 100.0
Potri.012G004700 Populus trichocarpa HOM05D006277 ORTHO05D007673 3.0e-107 392.9 423 60.8
Sabra12G0000500 Salix brachista HOM05D006277 ORTHO05D007673 2.0e-103 380.2 420 58.8
Sabra12G0006800 Salix brachista HOM05D006277 ORTHO05D007673 1.3e-102 377.5 422 58.8
GSVIVG01038680001 Vitis vinifera HOM05D006277 ORTHO05D007673 1.9e-101 373.6 429 56.9
Dinv29192 Davidia involucrata HOM05D006277 ORTHO05D007673 1.4e-99 367.5 429 55.7
QL09p006002 Quercus lobata HOM05D006277 ORTHO05D007673 1.3e-97 360.9 455 53.8
Gohir.A08G106400 Gossypium hirsutum HOM05D006277 ORTHO05D007673 1.4e-96 357.5 419 56.1
Thecc.03G212000 Theobroma cacao HOM05D006277 ORTHO05D007673 1.7e-94 350.5 421 56.1
Gorai.004G126300 Gossypium raimondii HOM05D006277 ORTHO05D007673 3.9e-94 349.4 417 54.9
Atru.chr12.2501 Acer truncatum HOM05D006277 ORTHO05D007673 9.5e-93 344.7 421 53.7
Duzib205G1288 Durio zibethinus HOM05D006277 ORTHO05D007673 1.1e-91 341.3 414 55.3
Atru.chr12.2525 Acer truncatum HOM05D006277 ORTHO05D007673 1.3e-89 334.3 413 53.8
CiPaw.06G038300 Carya illinoinensis HOM05D006277 ORTHO05D007673 8.6e-86 321.6 380 57.1
Haze_00334 Corylus avellana HOM05D006277 ORTHO05D007673 8.6e-86 321.6 517 46.6
COL.COLO4_14399 Corchorus olitorius HOM05D006277 ORTHO05D007673 3.3e-85 319.7 425 52.9
Glyma.06G139100 Glycine max HOM05D006277 ORTHO05D007673 6.4e-81 305.4 428 50.0
RcHm_v2.0_Chr1g0383301 Rosa chinensis HOM05D006277 ORTHO05D007673 1.4e-80 304.3 440 50.0
vmacro06474 Vaccinium macrocarpon HOM05D006277 ORTHO05D007673 1.4e-80 304.3 460 45.2
CANSAT21G1902 Cannabis sativa HOM05D006277 ORTHO05D007673 7.1e-80 302.0 418 49.3
Sc19g0000370 Simmondsia chinensis HOM05D006277 ORTHO05D007673 1.6e-79 300.8 425 50.1
TWI59G0797 Tripterygium wilfordii HOM05D006277 ORTHO05D007673 2.1e-79 300.4 291 60.1
MD01G1231400 Malus domestica HOM05D006277 ORTHO05D007673 4.6e-79 299.3 423 49.2
VMungo1309G1324 Vigna mungo HOM05D006277 ORTHO05D007673 7.8e-79 298.5 433 49.0
MSTRG.26953 Avicennia marina HOM05D006277 ORTHO05D007673 1.3e-78 297.7 425 49.6
CAN.G303.58 Capsicum annuum HOM05D006277 ORTHO05D007673 1.5e-77 294.3 428 49.3
CSS0047728 Camellia sinensis var. sinensis HOM05D006277 ORTHO05D007673 3.3e-77 293.1 430 47.0
Migut.F00123 Erythranthe guttata HOM05D006277 ORTHO05D007673 3.3e-77 293.1 425 49.9
Rhsim03G0218400 Rhododendron simsii HOM05D006277 ORTHO05D007673 5.6e-77 292.4 431 48.3
Cpa.g.sc3.186 Carica papaya HOM05D006277 ORTHO05D007673 1.2e-76 291.2 425 48.5
Lj1g0014471 Lotus japonicus HOM05D006277 ORTHO05D007673 1.6e-76 290.8 437 48.5
Phvul.009G040200 Phaseolus vulgaris HOM05D006277 ORTHO05D007673 3.6e-76 289.7 436 48.4
MD07G1303400 Malus domestica HOM05D006277 ORTHO05D007673 3.1e-75 286.6 413 48.4
EL10Ac3g05132 Beta vulgaris HOM05D006277 ORTHO05D007673 4.0e-75 286.2 417 48.2
PGSC0003DMG400000548 Solanum tuberosum HOM05D006277 ORTHO05D007673 4.0e-75 286.2 430 46.3
SalBow4G0692 Salvia bowleyana HOM05D006277 ORTHO05D007673 1.3e-73 281.2 429 48.0
FvH4_7g33320 Fragaria vesca HOM05D006277 ORTHO05D007673 2.2e-73 280.4 424 48.3
Hund09753 Selenicereus undatus HOM05D006277 ORTHO05D007673 8.4e-73 278.5 384 48.4
Ciclev10005393m.g Citrus clementina HOM05D006277 ORTHO05D007673 1.4e-72 277.7 294 58.8
Lalb_Chr23g0272041 Lupinus albus HOM05D006277 ORTHO05D007673 1.9e-72 277.3 452 44.9
FAN01G0327 Fragaria x ananassa HOM05D006277 ORTHO05D007673 2.4e-72 276.9 424 48.1
THA.LOC104803317 Tarenaya hassleriana HOM05D006277 ORTHO05D007673 1.2e-71 274.6 419 48.9
FAN10G3443 Fragaria x ananassa HOM05D006277 ORTHO05D007673 1.6e-71 274.2 424 47.9
Sopen03g027470 Solanum pennellii HOM05D006277 ORTHO05D007673 1.6e-71 274.2 424 45.0
FAN10G1913 Fragaria x ananassa HOM05D006277 ORTHO05D007673 6.0e-71 272.3 426 47.9
Prupe.2G322100 Prunus persica HOM05D006277 ORTHO05D007673 2.3e-70 270.4 414 46.6
Ca_16838_v3 Cicer arietinum L. HOM05D006277 ORTHO05D007673 3.9e-70 269.6 448 46.7
arahy.Tifrunner.gnm1.ann1.NYS2P6 Arachis hypogaea HOM05D006277 ORTHO05D007673 1.1e-69 268.1 440 46.4
arahy.Tifrunner.gnm1.ann1.VE49IY Arachis hypogaea HOM05D006277 ORTHO05D007673 2.5e-69 266.9 443 45.8
TAR626G1328 Trochodendron aralioides HOM05D006277 ORTHO05D007673 2.5e-69 266.9 411 45.7
arahy.Tifrunner.gnm1.ann1.YJ5L14 Arachis hypogaea HOM05D006277 ORTHO05D007673 5.6e-69 265.8 440 46.4
Glyma.04G225700 Glycine max HOM05D006277 ORTHO05D007673 5.6e-69 265.8 414 46.1
PGR142G2769 Punica granatum HOM05D006277 ORTHO05D007673 5.6e-69 265.8 434 45.2
Medtr3g093330 Medicago truncatula HOM05D006277 ORTHO05D007673 1.3e-68 264.6 423 46.6
Nitab4.5_0007121g0020 Nicotiana tabacum HOM05D006277 ORTHO05D007673 8.1e-68 261.9 386 45.3
Solyc03g079950.4 Solanum lycopersicum HOM05D006277 ORTHO05D007673 2.4e-67 260.4 401 45.9
Thhalv10004336m.g Eutrema salsugineum HOM05D006277 ORTHO05D007673 1.2e-66 258.1 421 47.0
Peaxi162Scf01026g00268 Petunia axillaris HOM05D006277 ORTHO05D007673 1.2e-66 258.1 418 47.8
SGA_v2.0_scaffold18G08496 Striga asiatica HOM05D006277 ORTHO05D007673 1.5e-66 257.7 433 46.0
Cc02_g00600 Coffea canephora HOM05D006277 ORTHO05D007673 2.6e-66 256.9 416 46.2
Cfa016128 Carpinus fangiana HOM05D006277 ORTHO05D007673 2.2e-65 253.8 335 50.1
Nitab4.5_0000021g0190 Nicotiana tabacum HOM05D006277 ORTHO05D007673 4.9e-65 252.7 351 49.3
Psat6g243000 Pisum sativum HOM05D006277 ORTHO05D007673 1.9e-64 250.8 431 45.5
HanXRQChr04g0117941 Helianthus annuus HOM05D006277 ORTHO05D007673 7.1e-64 248.8 209 68.4
TPR.G35912 Trifolium pratense HOM05D006277 ORTHO05D007673 7.1e-64 248.8 438 45.7
AUR62005949 Chenopodium quinoa HOM05D006277 ORTHO05D007673 1.6e-63 247.7 411 44.8
Sed0010003 Sechium edule HOM05D006277 ORTHO05D007673 2.7e-63 246.9 436 45.9
CsaV3_2G019700 Cucumis sativus L. HOM05D006277 ORTHO05D007673 3.5e-63 246.5 434 45.2
ClCG07G009750 Citrullus lanatus HOM05D006277 ORTHO05D007673 3.9e-62 243.0 439 44.6
LjContig00312_ERROPOS870357g0003049 Lotus japonicus HOM05D006277 ORTHO05D007673 7.4e-61 238.8 301 54.8
Eucgr.K00479 Eucalyptus grandis HOM05D006277 ORTHO05D007673 1.8e-59 234.2 356 47.5
Aa31LG11G3890 Aethionema arabicum HOM05D006277 ORTHO05D007673 2.0e-58 230.7 444 42.6
HPP92_017116 Vanilla planifolia HOM05D006277 ORTHO05D007673 2.0e-58 230.7 286 51.4
MELO3C023191.2 Cucumis melo HOM05D006277 ORTHO05D007673 4.5e-58 229.6 307 51.8
BcaNung02006 Brassica carinata HOM05D006277 ORTHO05D007673 7.6e-58 228.8 427 44.0
MBI16_g10337_MAGBIO Magnolia biondii HOM05D006277 ORTHO05D007673 1.3e-57 228.0 410 41.2
Gohir.D08G117800 Gossypium hirsutum HOM05D006277 ORTHO05D007673 1.1e-56 224.9 315 48.9
ECA238G0260 Erigeron canadensis HOM05D006277 ORTHO05D007673 1.4e-56 224.6 238 57.1
AUR62028116 Chenopodium quinoa HOM05D006277 ORTHO05D007673 2.4e-56 223.8 415 42.9
C07p43080 Brassica napus HOM05D006277 ORTHO05D007673 4.2e-56 223.0 435 42.5
BolC7t44835H Brassica oleracea HOM05D006277 ORTHO05D007673 7.1e-56 222.2 435 42.3
Carub.0006s2249 Capsella rubella HOM05D006277 ORTHO05D007673 7.1e-56 222.2 420 44.5
PSO384G3009 Papaver somniferum HOM05D006277 ORTHO05D007673 3.5e-55 219.9 258 55.0
FAN03G1266 Fragaria x ananassa HOM05D006277 ORTHO05D007673 4.6e-55 219.5 343 46.6
CARHR188820 Cardamine hirsuta HOM05D006277 ORTHO05D007673 6.0e-55 219.2 416 42.5
Sp2g22750 Schrenkiella parvula HOM05D006277 ORTHO05D007673 1.3e-54 218.0 431 41.8
Os02g0147700 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 3.0e-54 216.9 373 40.5
Lsat_1_v5_gn_2_135460 Lactuca sativa HOM05D006277 ORTHO05D007673 3.9e-54 216.5 362 45.6
Actinidia08720 Actinidia chinensis HOM05D006277 ORTHO05D007673 1.1e-53 214.9 308 45.5
PSO063G0207 Papaver somniferum HOM05D006277 ORTHO05D007673 1.5e-53 214.5 324 48.5
HPP92_017121 Vanilla planifolia HOM05D006277 ORTHO05D007673 2.5e-53 213.8 240 53.3
Oeu010718.2 Olea europaea HOM05D006277 ORTHO05D007673 3.3e-53 213.4 521 36.7
AUR62030650 Chenopodium quinoa HOM05D006277 ORTHO05D007673 1.3e-52 211.5 211 59.7
Os02g0147100 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 2.1e-52 210.7 359 40.7
A06p35430 Brassica napus HOM05D006277 ORTHO05D007673 6.2e-52 209.1 437 40.7
PSO170G0956 Papaver somniferum HOM05D006277 ORTHO05D007673 1.1e-51 208.4 324 46.9
BraA06t26466Z Brassica rapa HOM05D006277 ORTHO05D007673 1.8e-51 207.6 435 40.7
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 2.4e-51 207.2 404 42.3
arahy.Tifrunner.gnm1.ann1.T9XRV5 Arachis hypogaea HOM05D006277 ORTHO05D007673 3.4e-50 203.4 270 53.0
AL6G36240 Arabidopsis lyrata HOM05D006277 ORTHO05D007673 2.2e-49 200.7 477 38.8
DCAR_010558 Daucus carota HOM05D006277 ORTHO05D007673 5.5e-48 196.1 442 39.6
ATR0626G063 Amborella trichopoda HOM05D006277 ORTHO05D007673 2.7e-47 193.7 291 44.7
CDE02G3091 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 3.5e-47 193.4 297 47.8
Zm00001eb232230 Zea mays HOM05D006277 ORTHO05D007673 3.9e-46 189.9 306 45.8
Aqoxy7G02781 Aquilegia oxysepala HOM05D006277 ORTHO05D007673 5.1e-46 189.5 414 38.2
AT5G24630 Arabidopsis thaliana HOM05D006277 ORTHO05D007673 6.7e-46 189.1 475 37.9
SEGI_26440 Sequoiadendron giganteum HOM05D006277 ORTHO05D007673 1.1e-45 188.3 416 36.8
BcaNung01248 Brassica carinata HOM05D006277 ORTHO05D007673 1.4e-43 181.4 417 38.6
arahy.Tifrunner.gnm1.ann1.Z5WHM0 Arachis hypogaea HOM05D006277 ORTHO05D007673 4.1e-43 179.9 401 39.9
PSO384G0555 Papaver somniferum HOM05D006277 ORTHO05D007673 2.5e-40 170.6 158 62.7
Nn7g37003 Nelumbo nucifera HOM05D006277 ORTHO05D007673 2.4e-35 154.1 334 34.7
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 1.0e-33 148.7 170 54.7
Mapoly0143s0029 Marchantia polymorpha HOM05D006277 ORTHO05D007673 3.8e-33 146.7 122 59.8
BraA09t36286Z Brassica rapa HOM05D000010 ORTHO05D000063 1.9e-32 144.4 222 46.8
A09p06430 Brassica napus HOM05D000010 ORTHO05D000063 5.5e-32 142.9 197 49.7
Pp3c7_3940 Physcomitrium patens HOM05D006277 ORTHO05D007673 3.3e-29 133.7 218 43.1
Potri.015G000701 Populus trichocarpa HOM05D006277 ORTHO05D007673 5.7e-29 132.9 98 70.4
AagrBONN_evm.TU.Sc2ySwM_362.1883 Anthoceros agrestis HOM05D006277 ORTHO05D007673 1.8e-27 127.9 208 42.3
Pp3c11_21910 Physcomitrium patens HOM05D006277 ORTHO05D007673 2.0e-26 124.4 285 35.8
C09p07160 Brassica napus HOM05D000010 ORTHO05D000063 5.0e-25 119.8 386 33.9
CBR_g24064 Chara braunii HOM05D006277 ORTHO05D007673 9.4e-24 115.5 226 37.2
CBR_g39579 Chara braunii HOM05D000601 ORTHO05D007673 6.1e-23 112.8 110 49.1
CDE06G1557 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 4.4e-21 106.7 195 42.1
CiPaw.10G123600 Carya illinoinensis HOM05D006277 ORTHO05D007673 6.3e-20 102.8 68 76.5
CBR_g31160 Chara braunii HOM05D006277 ORTHO05D007673 4.1e-19 100.1 138 42.8
Hma1.2p1_1235F.1_g269240 Hydrangea macrophylla HOM05D006277 ORTHO05D007673 2.7e-15 87.4 193 38.9
Nn5g26949 Nelumbo nucifera HOM05D006277 ORTHO05D007673 7.0e-11 72.8 49 69.4
MCO04G384 Micromonas commoda HOM05D006277 ORTHO05D007673 9.1e-11 72.4 129 33.3
Ciclev10023238m.g Citrus clementina HOM05D006277 ORTHO05D007673 1.8e-06 58.2 36 66.7


User provided reference genes

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