Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 0.0e+00 3503.8 1836 100.0
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 0.0e+00 1248.0 1827 47.5
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 0.0e+00 1160.6 1897 45.1
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 1.6e-285 987.3 1495 46.6
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 5.5e-265 919.1 1812 41.1
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 1.8e-252 877.5 1915 40.0
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 2.3e-247 860.5 1830 39.2
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 1.9e-241 840.9 1836 38.9
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 9.4e-241 838.6 1848 39.8
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 9.4e-233 812.0 1870 37.5
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 2.7e-232 810.4 1837 38.5
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 4.0e-223 780.0 1861 37.6
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 3.7e-221 773.5 1900 36.9
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 5.4e-212 743.0 1855 37.5
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 1.4e-207 728.4 1968 35.6
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 2.3e-202 711.1 1839 35.3
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 4.3e-201 706.8 1877 35.7
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 9.5e-201 705.7 1962 35.4
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 1.4e-199 701.8 1911 36.0
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 2.0e-198 698.0 1959 35.4
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 2.0e-182 644.8 1866 36.1
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 9.2e-180 636.0 1879 34.8
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 9.6e-169 599.4 1806 34.2
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 4.4e-166 590.5 1874 33.4
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 1.7e-162 578.6 1850 33.9
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 4.0e-151 540.8 1776 32.4
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 4.5e-150 537.3 1776 32.3
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 3.7e-144 517.7 1751 32.7
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 1.1e-143 516.2 1795 31.6
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 5.3e-143 513.8 919 42.1
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 1.2e-142 512.7 1786 33.2
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 8.7e-138 496.5 1802 32.4
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 5.0e-133 480.7 1612 32.1
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 8.5e-133 479.9 1880 32.2
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.4e-130 472.6 1129 36.4
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 5.1e-130 470.7 1930 30.5
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 5.7e-129 467.2 1861 31.6
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 3.2e-124 451.4 1803 31.2
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 3.0e-122 444.9 1647 32.1
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 3.9e-122 444.5 1761 32.1
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 4.1e-119 434.5 1626 31.7
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 8.5e-117 426.8 1896 30.7
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 1.8e-114 419.1 513 51.7
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 5.7e-113 414.1 1861 30.6
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 1.3e-112 412.9 1811 30.3
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 1.4e-111 409.5 1853 30.4
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 3.8e-109 401.4 557 49.4
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 2.7e-102 378.6 1367 31.1
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 1.1e-95 356.7 772 37.8
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 5.9e-94 350.9 1847 29.0
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 1.7e-93 349.4 1795 28.5
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 1.5e-92 346.3 1660 29.5
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 3.3e-92 345.1 1664 28.0
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 4.7e-91 341.3 1857 29.6
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 2.0e-89 335.9 1852 28.9
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 7.5e-89 334.0 1676 27.9
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 1.2e-86 326.6 495 49.5
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 3.5e-86 325.1 1928 27.7
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 3.6e-75 288.5 437 48.1
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 6.2e-75 287.7 1607 27.8
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 8.1e-75 287.3 792 34.3
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 2.3e-74 285.8 1691 27.3
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 1.7e-72 279.6 1791 27.9
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 2.9e-72 278.9 1789 28.0
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 3.7e-72 278.5 1955 27.1
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 6.4e-72 277.7 1707 27.9
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 3.2e-71 275.4 1944 26.4
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 7.3e-68 264.2 546 41.0
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 6.2e-67 261.2 1681 25.8
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 5.2e-66 258.1 789 33.8
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 1.5e-65 256.5 789 33.7
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 7.6e-65 254.2 1828 25.8
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 6.0e-62 244.6 1904 25.6
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 1.7e-61 243.0 1720 27.4
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 3.1e-58 232.3 1800 26.6
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 5.2e-58 231.5 1763 25.8
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 7.6e-57 227.6 1763 25.8
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 1.7e-56 226.5 483 39.3
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 2.2e-56 226.1 531 39.0
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 4.9e-56 224.9 479 40.1
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 4.9e-56 224.9 1898 25.5
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 1.1e-55 223.8 483 39.1
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 3.2e-55 222.2 1673 27.3
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 4.2e-55 221.9 1053 29.0
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 9.3e-55 220.7 180 70.6
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 1.0e-53 217.2 1730 26.1
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 1.3e-53 216.9 483 37.9
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 1.3e-53 216.9 483 37.9
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 6.6e-53 214.5 1994 25.9
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 1.1e-52 213.8 1770 25.6
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 1.9e-52 213.0 1034 29.7
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 3.3e-52 212.2 469 37.1
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 3.3e-52 212.2 183 66.7
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 1.3e-51 210.3 1668 26.5
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 2.1e-51 209.5 519 37.4
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 2.8e-51 209.1 533 36.8
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 2.8e-51 209.1 657 33.9
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 6.2e-51 208.0 1761 25.0
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 8.1e-51 207.6 517 37.3
Dinv14698 Davidia involucrata HOM05D000237 ORTHO05D006530 2.4e-50 206.1 1159 27.7
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 3.4e-49 202.2 520 36.9
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 4.4e-49 201.8 1038 29.1
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 7.6e-49 201.1 908 28.9
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 3.2e-47 195.7 560 35.7
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 9.3e-47 194.1 555 35.0
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 4.3e-44 185.3 512 35.5
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 1.6e-43 183.3 1703 24.4
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 6.9e-42 177.9 424 38.7
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 2.6e-41 176.0 704 30.7
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 2.3e-37 162.9 244 45.1
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 8.1e-35 154.5 461 33.4
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 1.4e-34 153.7 469 32.8
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 3.1e-34 152.5 502 33.3
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 4.9e-32 145.2 570 31.6
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 1.8e-26 126.7 320 35.3
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 3.2e-23 115.9 295 37.3
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 4.6e-22 112.1 526 30.0
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 2.3e-21 109.8 209 42.1
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 5.1e-21 108.6 105 66.7
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 4.3e-20 105.5 127 52.0
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 5.9e-17 95.1 192 41.1
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 2.2e-16 93.2 123 47.2
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 7.9e-14 84.7 450 28.0
SEGI_15365 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 6.3e-11 75.1 509 27.5
Lj4P681T20 Lonicera japonica HOM05D000237 ORTHO05D006530 3.8e-08 65.9 135 39.3
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 1.1e-07 64.3 232 30.6


User provided reference genes

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