Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 3.9e-116 421.4 200 100.0
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 1.0e-100 370.2 200 86.0
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.1e-99 366.7 200 83.5
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 3.3e-99 365.2 200 85.5
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 4.3e-99 364.8 200 84.5
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 4.3e-99 364.8 200 83.0
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 4.3e-99 364.8 200 83.0
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 2.4e-97 359.0 206 82.0
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 5.3e-97 357.8 201 83.1
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 9.0e-97 357.1 202 83.2
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 1.5e-96 356.3 200 82.0
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.5e-96 356.3 192 86.5
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 2.0e-96 355.9 199 82.4
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 2.0e-96 355.9 220 77.7
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 1.3e-95 353.2 200 81.5
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 1.7e-95 352.8 193 83.4
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.4e-94 349.7 191 84.3
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 9.3e-94 347.1 191 83.2
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 9.3e-94 347.1 203 79.3
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 2.1e-93 345.9 204 79.4
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 2.1e-93 345.9 198 80.3
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 6.0e-93 344.4 201 81.1
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 6.0e-93 344.4 200 81.0
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 2.3e-92 342.4 201 78.1
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 8.7e-92 340.5 195 81.0
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 1.3e-90 336.7 200 77.0
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.6e-90 336.3 200 77.5
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 2.1e-90 335.9 202 79.2
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 2.1e-90 335.9 191 82.2
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.8e-90 335.5 200 76.0
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 4.8e-90 334.7 200 78.5
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 4.8e-90 334.7 200 78.5
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.1e-89 333.6 200 75.5
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 1.8e-89 332.8 200 77.5
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 9.0e-89 330.5 192 79.7
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 9.0e-89 330.5 192 79.7
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.2e-88 330.1 200 75.5
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 2.6e-88 328.9 198 75.3
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 2.6e-88 328.9 185 81.6
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 4.5e-88 328.2 208 77.4
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 5.9e-88 327.8 208 77.4
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 1.0e-87 327.0 204 72.5
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 1.0e-87 327.0 204 72.1
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 1.3e-87 326.6 201 74.6
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 1.7e-87 326.2 201 75.6
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 2.9e-87 325.5 205 76.6
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 3.8e-87 325.1 192 77.6
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 5.0e-87 324.7 202 76.2
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 5.0e-87 324.7 203 72.4
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 4.2e-86 321.6 192 79.2
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 5.5e-86 321.2 207 73.4
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 1.2e-85 320.1 201 72.1
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 1.2e-85 320.1 201 72.1
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 2.1e-85 319.3 274 60.6
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 3.6e-85 318.5 201 70.6
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 1.3e-84 316.6 196 70.9
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 3.0e-84 315.5 199 72.9
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 5.1e-84 314.7 192 74.0
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 5.1e-84 314.7 200 72.5
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 6.7e-84 314.3 193 71.5
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 1.5e-83 313.2 194 71.6
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 1.5e-83 313.2 196 75.5
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 1.9e-83 312.8 201 71.6
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 4.3e-83 311.6 197 69.5
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 5.7e-83 311.2 191 76.4
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 7.4e-83 310.8 201 71.6
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 3.1e-81 305.4 201 69.7
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 5.3e-81 304.7 200 70.0
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 6.9e-81 304.3 200 71.0
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 1.2e-80 303.5 190 73.2
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 1.2e-80 303.5 199 71.4
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 3.4e-80 302.0 202 66.8
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 4.5e-80 301.6 203 70.9
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 7.7e-80 300.8 181 76.2
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 1.0e-79 300.4 200 68.0
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 1.7e-79 299.7 206 66.5
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 2.9e-79 298.9 187 73.3
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 2.5e-78 295.8 202 69.3
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 4.2e-78 295.0 201 67.7
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 1.6e-77 293.1 207 67.6
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 2.1e-77 292.7 190 69.5
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 6.1e-77 291.2 203 66.5
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 6.1e-77 291.2 203 66.5
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 1.0e-76 290.4 195 70.8
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 3.0e-76 288.9 205 65.9
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 6.7e-76 287.7 204 64.7
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 2.6e-75 285.8 193 69.9
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 3.3e-75 285.4 194 69.6
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 3.3e-75 285.4 273 54.9
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 5.7e-75 284.6 189 71.4
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 5.7e-75 284.6 192 68.2
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 5.7e-75 284.6 204 67.2
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 9.7e-75 283.9 194 69.6
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 9.7e-75 283.9 204 64.2
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 1.1e-73 280.4 196 66.3
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 3.1e-73 278.9 193 69.4
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 5.9e-72 274.6 178 72.5
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 5.9e-72 274.6 192 67.7
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 1.0e-71 273.9 193 65.8
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 3.8e-71 271.9 198 63.6
GSVIVG01009218001 Vitis vinifera HOM05D004775 ORTHO05D005351 2.5e-70 269.2 212 63.7
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 5.5e-70 268.1 147 81.6
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 7.2e-70 267.7 194 64.4
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 7.2e-70 267.7 194 65.5
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 1.2e-69 266.9 194 65.5
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 2.7e-69 265.8 194 64.4
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 2.7e-69 265.8 194 64.9
Nitab4.5_0000354g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 5.2e-68 261.5 173 69.4
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 1.1e-67 260.4 178 68.5
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 2.0e-67 259.6 200 63.5
Eucgr.F00443 Eucalyptus grandis HOM05D004775 ORTHO05D005351 2.6e-67 259.2 201 62.2
ClCG11G014720 Citrullus lanatus HOM05D004775 ORTHO05D005351 7.4e-67 257.7 164 77.4
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 6.3e-66 254.6 179 68.2
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 8.2e-66 254.2 178 66.9
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 8.2e-66 254.2 178 66.9
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 5.3e-65 251.5 200 61.0
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 5.3e-65 251.5 199 61.3
Phvul.008G183600 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 7.0e-65 251.1 158 74.1
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 6.5e-63 244.6 217 58.5
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 6.5e-63 244.6 291 46.0
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.6e-61 240.0 183 64.5
EL10Ac1g00475 Beta vulgaris HOM05D004775 ORTHO05D005351 2.1e-61 239.6 201 56.7
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 8.8e-60 234.2 132 73.5
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 1.2e-59 233.8 190 56.8
Hma1.2p1_0010F.1_g006440 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 4.1e-57 225.3 139 74.1
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 4.1e-57 225.3 207 51.2
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.0e-55 220.7 154 66.2
Haze_22493 Corylus avellana HOM05D004775 ORTHO05D005351 7.2e-54 214.5 189 60.3
CDE01G0193 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 9.4e-54 214.2 193 53.4
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 1.6e-53 213.4 178 58.4
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 4.7e-53 211.8 141 70.9
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 8.0e-53 211.1 149 66.4
HanXRQChr10g0277731 Helianthus annuus HOM05D004775 ORTHO05D005351 8.0e-53 211.1 157 63.7
Zm00001eb394470 Zea mays HOM05D004775 ORTHO05D005351 8.0e-53 211.1 196 53.6
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 5.2e-52 208.4 169 58.6
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 5.2e-52 208.4 180 58.9
CDE02G4408 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 2.6e-51 206.1 189 52.9
Os03g0356652 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 2.6e-51 206.1 198 50.0
VMungo0647G0779 Vigna mungo HOM05D004775 ORTHO05D005351 4.4e-51 205.3 135 72.6
Zm00001eb110680 Zea mays HOM05D004775 ORTHO05D005351 4.8e-50 201.8 187 50.3
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 7.0e-49 198.0 108 75.0
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 1.2e-45 187.2 200 43.0
AUR62019121 Chenopodium quinoa HOM05D004775 ORTHO05D005351 2.1e-45 186.4 203 49.8
Os07g0657500 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 8.0e-45 184.5 183 46.4
AUR62014379 Chenopodium quinoa HOM05D004775 ORTHO05D005351 9.8e-43 177.6 203 48.3
Manes.12G122400 Manihot esculenta HOM05D004775 ORTHO05D005351 2.2e-42 176.4 193 43.5
Sopen12g030080 Solanum pennellii HOM05D000583 ORTHO05D000442 4.9e-42 175.3 149 58.4
BcaC07g41856 Brassica carinata HOM05D004775 ORTHO05D005351 2.9e-39 166.0 192 47.9
BolC8t52458H Brassica oleracea HOM05D000348 ORTHO05D000244 2.9e-39 166.0 192 47.9
BraA09t41874Z Brassica rapa HOM05D000348 ORTHO05D000244 1.1e-38 164.1 192 47.4
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 1.5e-38 163.7 130 60.0
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 2.0e-32 143.3 197 42.6
MBI05_g43456_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.8e-28 130.2 87 66.7
MBI10_g33158_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 2.2e-26 123.2 90 62.2
Dinv36973 Davidia involucrata HOM05D004775 ORTHO05D005351 2.6e-19 99.8 149 39.6
vmacro22764 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 3.7e-18 95.9 74 60.8
ClCG02G002100 Citrullus lanatus HOM05D006348 ORTHO05D008261 6.6e-15 85.1 158 31.0
MELO3C018834.2 Cucumis melo HOM05D006348 ORTHO05D008261 8.6e-15 84.7 162 29.6
Atru.chr6.3231 Acer truncatum HOM05D006348 ORTHO05D008261 1.5e-14 84.0 158 30.4
CARHR222170 Cardamine hirsuta HOM05D006348 ORTHO05D008261 1.5e-14 84.0 170 29.4
Aqoxy1G03030 Aquilegia oxysepala HOM05D006348 ORTHO05D008261 2.5e-14 83.2 152 30.9
AT4G15420 Arabidopsis thaliana HOM05D006348 ORTHO05D008261 3.3e-14 82.8 167 29.3
EL10Ac5g11991 Beta vulgaris HOM05D006348 ORTHO05D008261 4.3e-14 82.4 151 31.1
AL7G40130 Arabidopsis lyrata HOM05D006348 ORTHO05D008261 7.3e-14 81.6 167 29.3
Dinv08741 Davidia involucrata HOM05D006348 ORTHO05D008261 7.3e-14 81.6 160 31.9
ATR0681G302 Amborella trichopoda HOM05D006348 ORTHO05D008261 1.6e-13 80.5 151 31.8
SGA_v2.0_scaffold159G37573 Striga asiatica HOM05D006348 ORTHO05D008261 2.8e-13 79.7 161 31.1
CDE09G1141 Ceratophyllum demersum HOM05D006348 ORTHO05D008261 8.9e-12 74.7 158 30.4
CDE07G0871 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 3.4e-11 72.8 55 52.7
Pp3c3_2100 Physcomitrium patens HOM05D006348 ORTHO05D008261 4.4e-11 72.4 191 27.2
Nn1g03434 Nelumbo nucifera HOM05D006348 ORTHO05D008261 5.8e-11 72.0 151 30.5
Medtr3g099560 Medicago truncatula HOM05D004775 ORTHO05D005351 9.9e-11 71.2 39 79.5
PGSC0003DMG400006141 Solanum tuberosum HOM05D006348 ORTHO05D008261 1.7e-10 70.5 161 28.0
Glyma.04G091000 Glycine max HOM05D004775 ORTHO05D005351 2.7e-08 63.2 56 62.5
Zm00001eb329620 Zea mays HOM05D004775 ORTHO05D005351 1.5e-06 57.4 96 33.3


User provided reference genes

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