Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 5.0e-243 844.0 415 100.0
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 4.8e-201 704.5 414 82.6
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 1.8e-200 702.6 414 82.9
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 2.9e-198 695.3 415 79.5
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 4.9e-198 694.5 418 79.4
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 9.3e-197 690.3 415 79.0
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 7.9e-196 687.2 415 78.3
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 1.0e-195 686.8 415 78.8
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 2.5e-194 682.2 412 78.4
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 4.3e-194 681.4 415 80.2
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 6.3e-193 677.6 415 79.3
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 4.1e-192 674.9 415 77.8
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.3e-190 669.8 411 78.8
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.3e-190 669.8 415 76.6
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 3.5e-188 661.8 411 77.6
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 7.9e-188 660.6 415 76.9
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.9e-186 656.0 412 74.0
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 2.2e-185 652.5 417 74.3
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 4.1e-184 648.3 416 73.8
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 2.7e-180 635.6 415 74.9
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 5.1e-179 631.3 414 72.5
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 2.5e-178 629.0 413 72.9
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 4.8e-177 624.8 381 80.1
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 7.2e-173 610.9 411 71.3
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 6.7e-171 604.4 415 72.5
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 3.1e-168 595.5 411 71.0
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 9.1e-168 594.0 415 70.4
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 2.6e-167 592.4 415 70.6
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 5.9e-167 591.3 413 69.2
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 1.3e-166 590.1 408 70.1
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 2.5e-165 585.9 406 69.0
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 4.2e-165 585.1 415 66.7
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 9.4e-165 583.9 409 68.0
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 2.3e-163 579.3 417 67.4
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 4.4e-162 575.1 414 69.3
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 7.5e-162 574.3 412 67.7
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 7.5e-162 574.3 414 67.1
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 2.2e-161 572.8 362 75.1
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 6.3e-161 571.2 397 68.8
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 1.1e-160 570.5 393 67.7
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 7.0e-160 567.8 415 66.0
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 1.2e-159 567.0 404 66.6
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 5.9e-159 564.7 410 68.3
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 5.9e-159 564.7 400 66.8
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 7.7e-159 564.3 416 65.6
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 1.7e-158 563.1 416 65.6
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 6.5e-158 561.2 399 68.2
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 4.2e-157 558.5 417 64.7
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 9.4e-157 557.4 417 65.0
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 5.7e-154 548.1 413 67.1
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 5.7e-154 548.1 413 67.1
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 3.7e-153 545.4 409 63.6
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 5.4e-152 541.6 413 63.0
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 9.1e-152 540.8 414 63.3
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 5.9e-151 538.1 413 63.4
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 8.5e-150 534.3 412 62.9
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 1.9e-149 533.1 409 62.6
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 4.2e-149 531.9 405 65.2
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 4.7e-148 528.5 414 62.6
TAR091G0003 Trochodendron aralioides HOM05D004078 ORTHO05D004823 6.1e-148 528.1 322 77.3
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.0e-147 527.3 414 62.3
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 2.3e-147 526.2 388 66.0
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.7e-145 520.0 388 65.5
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 6.3e-145 518.1 410 61.7
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 1.2e-143 513.8 410 61.7
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 7.7e-143 511.1 399 63.2
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 3.8e-142 508.8 404 62.6
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 1.9e-141 506.5 408 60.5
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 2.8e-140 502.7 405 58.3
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.5e-138 496.9 376 62.8
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 7.5e-138 494.6 409 60.4
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 4.9e-137 491.9 376 63.0
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 4.9e-137 491.9 412 60.2
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 1.1e-136 490.7 335 69.9
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 2.4e-136 489.6 416 58.4
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 5.4e-136 488.4 410 58.8
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 1.2e-135 487.3 406 59.9
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.6e-135 486.9 399 59.9
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 2.0e-135 486.5 416 58.7
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 4.6e-135 485.3 428 61.0
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 2.5e-133 479.6 391 62.7
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 7.3e-133 478.0 418 56.7
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 2.1e-132 476.5 408 58.3
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 2.8e-132 476.1 355 63.1
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 6.2e-132 474.9 403 58.8
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 8.0e-132 474.6 385 63.1
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 8.0e-132 474.6 395 61.0
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 2.3e-131 473.0 392 61.2
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 3.7e-129 465.7 419 56.1
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.9e-128 463.4 408 57.8
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 7.0e-128 461.5 355 66.8
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 1.6e-127 460.3 394 61.4
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 2.0e-127 459.9 415 57.6
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 1.9e-125 453.4 392 60.5
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 3.3e-125 452.6 392 60.5
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 5.6e-125 451.8 387 60.5
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 1.6e-124 450.3 392 58.9
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 2.1e-124 449.9 364 64.3
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 3.6e-124 449.1 393 61.1
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 6.2e-124 448.4 405 55.3
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.1e-123 447.6 387 59.9
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.1e-123 447.6 389 60.4
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.4e-123 447.2 391 60.6
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 6.8e-123 444.9 395 61.5
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 6.8e-123 444.9 384 60.9
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 1.5e-122 443.7 391 55.0
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 3.4e-122 442.6 410 55.4
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 1.7e-121 440.3 418 54.3
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 8.3e-121 438.0 413 52.5
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 1.1e-120 437.6 384 59.6
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 1.4e-120 437.2 395 56.7
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 4.1e-120 435.6 395 56.5
Thecc.06G067400 Theobroma cacao HOM05D004078 ORTHO05D004823 1.6e-119 433.7 316 68.0
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 6.0e-119 431.8 399 54.4
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 1.7e-118 430.3 396 53.3
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 3.0e-118 429.5 392 55.1
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 3.9e-118 429.1 406 53.9
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 7.3e-117 424.9 396 53.3
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 7.3e-117 424.9 397 54.9
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.2e-116 424.1 370 60.0
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 1.6e-116 423.7 396 53.0
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 1.6e-116 423.7 396 53.0
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 2.1e-116 423.3 408 53.4
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 1.4e-115 420.6 397 54.4
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 3.4e-114 416.0 381 53.5
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 9.2e-112 407.9 399 54.9
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 1.5e-109 400.6 356 54.8
Gohir.D11G264400 Gossypium hirsutum HOM05D004078 ORTHO05D004823 7.3e-109 398.3 349 57.3
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 9.6e-109 397.9 424 48.3
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 1.6e-108 397.1 395 55.9
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 6.2e-108 395.2 409 47.4
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 4.0e-107 392.5 403 48.1
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 1.1e-101 374.4 379 52.8
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 2.5e-101 373.2 376 50.5
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 9.6e-101 371.3 389 50.6
Thecc.05G287700 Theobroma cacao HOM05D004078 ORTHO05D004823 1.3e-100 370.9 292 63.0
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 1.4e-99 367.5 404 49.0
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 1.8e-99 367.1 388 49.2
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 4.5e-98 362.5 404 48.5
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 2.9e-97 359.8 403 45.7
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 6.4e-97 358.6 403 47.1
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 8.1e-92 341.7 360 46.7
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 2.0e-90 337.0 377 46.7
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 5.8e-90 335.5 421 45.4
Nn7g37243 Nelumbo nucifera HOM05D004078 ORTHO05D004823 4.8e-84 315.8 279 58.8
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 9.0e-83 311.6 408 43.4
CDE02G0789 Ceratophyllum demersum HOM05D004078 ORTHO05D004823 1.7e-81 307.4 289 52.9
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 8.4e-81 305.1 374 45.2
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 1.5e-77 294.3 377 44.0
COL.COLO4_24641 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.3e-73 281.2 295 53.2
Sopen03g029010 Solanum pennellii HOM05D004078 ORTHO05D004823 8.5e-73 278.5 229 58.5
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 9.3e-72 275.0 375 40.5
Prupe.8G047700 Prunus persica HOM05D004078 ORTHO05D004823 2.5e-64 250.4 288 44.4
PGSC0003DMG400025628 Solanum tuberosum HOM05D004078 ORTHO05D004823 2.8e-60 236.9 243 53.1
CAN.G20.32 Capsicum annuum HOM05D004078 ORTHO05D004823 3.1e-59 233.4 181 61.3
ClCG08G013980 Citrullus lanatus HOM05D004078 ORTHO05D150179 1.0e-57 228.4 352 38.9
Os02g0482400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 1.9e-56 224.2 232 50.9
Nn7g37247 Nelumbo nucifera HOM05D004078 ORTHO05D004823 3.8e-49 199.9 173 59.5
Hma1.2p1_0023F.1_g015870 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 9.4e-48 195.3 203 52.2
GSVIVG01015446001 Vitis vinifera HOM05D004078 ORTHO05D004823 6.1e-47 192.6 177 57.1
RcHm_v2.0_Chr3g0490331 Rosa chinensis HOM05D004078 ORTHO05D004823 1.4e-46 191.4 138 68.8
RcHm_v2.0_Chr3g0490321 Rosa chinensis HOM05D004078 ORTHO05D004823 1.4e-43 181.4 189 52.4
QL02p013060 Quercus lobata HOM05D004078 ORTHO05D004823 9.1e-43 178.7 127 67.7
GSVIVG01008730001 Vitis vinifera HOM05D004078 ORTHO05D004823 4.5e-42 176.4 307 37.1
PGSC0003DMG400024452 Solanum tuberosum HOM05D004078 ORTHO05D004823 6.1e-39 166.0 309 36.2
Prupe.8G048000 Prunus persica HOM05D004078 ORTHO05D004823 3.0e-38 163.7 135 57.8
AagrBONN_evm.TU.Sc2ySwM_340.327 Anthoceros agrestis HOM05D004078 ORTHO05D004823 8.3e-36 155.6 151 51.7
RcHm_v2.0_Chr3g0485801 Rosa chinensis HOM05D004078 ORTHO05D004823 3.1e-35 153.7 350 34.3
TPR.G7712 Trifolium pratense HOM05D004078 ORTHO05D004823 5.0e-33 146.4 114 57.9
Sabra02G0012600 Salix brachista HOM05D004078 ORTHO05D004823 3.4e-21 107.1 62 79.0
Aqoxy6G01662 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 7.5e-21 105.9 74 66.2
Mapoly0005s0182 Marchantia polymorpha HOM05D003708 ORTHO05D004452 1.9e-16 91.3 345 26.1
Nn1g04897 Nelumbo nucifera HOM05D003708 ORTHO05D004452 4.4e-13 80.1 378 24.3
FAN12G3541 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.3e-09 67.8 45 68.9


User provided reference genes

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