Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 1.1e-214 749.6 355 100.0
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 7.7e-192 673.7 351 88.3
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 1.7e-191 672.5 351 88.9
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 2.5e-190 668.7 351 87.7
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 3.4e-187 658.3 351 86.3
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 4.8e-186 654.4 354 85.3
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 1.1e-185 653.3 351 86.0
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 2.3e-183 645.6 351 87.2
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 5.0e-183 644.4 360 83.9
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 8.6e-183 643.7 351 84.6
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 5.5e-182 641.0 351 84.0
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 5.5e-182 641.0 352 84.4
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 9.5e-182 640.2 351 82.9
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 2.8e-181 638.6 351 83.5
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 6.1e-181 637.5 351 82.1
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 8.0e-181 637.1 351 84.0
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 4.0e-180 634.8 351 84.6
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 1.2e-179 633.3 339 85.8
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 2.0e-179 632.5 339 86.7
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 1.7e-178 629.4 351 83.2
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 4.9e-178 627.9 350 82.0
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 1.4e-177 626.3 350 82.6
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 2.4e-177 625.5 351 81.2
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 4.1e-177 624.8 350 81.7
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 5.4e-177 624.4 351 82.9
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 1.7e-175 619.4 350 81.1
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 2.8e-173 612.1 350 80.0
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 3.6e-173 611.7 350 80.3
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 3.6e-173 611.7 350 80.3
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 6.1e-173 610.9 350 80.9
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 1.4e-172 609.8 351 80.3
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 5.2e-172 607.8 351 80.9
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 6.8e-172 607.4 351 79.8
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 6.8e-172 607.4 351 80.6
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 8.9e-172 607.1 351 80.9
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 1.2e-171 606.7 351 80.9
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 1.2e-171 606.7 353 81.6
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 1.5e-171 606.3 318 87.7
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 1.5e-171 606.3 351 79.2
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 1.5e-171 606.3 350 79.4
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 2.0e-171 605.9 351 80.3
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 2.6e-171 605.5 351 81.2
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 4.4e-171 604.7 351 78.9
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 9.8e-171 603.6 351 80.3
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 4.9e-170 601.3 353 80.2
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 1.1e-169 600.1 351 78.9
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 1.4e-169 599.7 351 79.2
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 4.1e-169 598.2 350 77.1
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 7.0e-169 597.4 351 78.1
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 1.2e-168 596.7 351 78.6
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 2.0e-168 595.9 374 75.1
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 7.8e-168 594.0 351 78.1
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 1.3e-167 593.2 339 79.4
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 1.3e-167 593.2 351 77.5
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 3.0e-167 592.0 351 77.5
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 3.9e-167 591.7 338 79.3
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 3.9e-167 591.7 351 78.3
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 6.6e-167 590.9 338 80.5
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 1.5e-166 589.7 351 77.2
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 1.9e-166 589.3 351 77.2
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 7.3e-166 587.4 351 77.5
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 7.3e-166 587.4 351 78.1
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 7.3e-166 587.4 351 78.6
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 4.7e-165 584.7 318 83.6
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 1.8e-164 582.8 351 77.2
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 3.1e-164 582.0 351 76.6
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 3.1e-164 582.0 351 76.6
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 4.0e-164 581.6 351 77.2
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 2.0e-163 579.3 351 76.9
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 2.0e-163 579.3 351 77.2
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 2.0e-163 579.3 383 74.2
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 3.4e-163 578.6 340 79.4
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 1.3e-162 576.6 351 75.5
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 1.1e-161 573.5 346 76.3
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 5.4e-161 571.2 354 76.8
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 2.7e-160 568.9 358 75.4
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 2.7e-160 568.9 350 75.7
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 1.1e-158 563.5 351 74.4
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 7.3e-158 560.8 351 74.6
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 1.2e-157 560.1 351 74.1
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 1.6e-157 559.7 351 74.6
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 2.1e-157 559.3 338 76.6
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 3.6e-157 558.5 305 84.3
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 8.1e-157 557.4 351 73.5
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 8.1e-157 557.4 351 73.5
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 1.8e-156 556.2 351 74.9
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 2.3e-156 555.8 351 74.4
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.3e-154 550.1 351 74.9
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 3.7e-154 548.5 351 73.8
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 4.1e-153 545.0 318 78.6
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 4.1e-153 545.0 339 77.6
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 9.2e-153 543.9 351 70.1
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 6.6e-151 537.7 408 63.5
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 8.1e-149 530.8 346 72.3
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 1.5e-147 526.6 318 75.8
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 5.8e-147 524.6 295 81.0
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 9.9e-147 523.9 297 80.1
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 9.9e-147 523.9 297 80.1
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 9.2e-145 517.3 338 67.5
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 4.9e-138 495.0 352 64.2
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 3.2e-137 492.3 318 73.3
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 9.3e-137 490.7 296 77.4
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 3.5e-136 488.8 323 72.8
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 2.5e-134 482.6 307 73.0
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 7.3e-134 481.1 396 61.4
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 4.8e-133 478.4 352 62.5
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 2.2e-130 469.5 269 78.1
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 4.9e-130 468.4 255 83.1
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 4.6e-128 461.8 352 60.8
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 2.9e-122 442.6 352 63.9
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 1.9e-121 439.9 263 77.9
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 5.5e-113 411.8 223 86.1
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.8e-100 370.2 200 84.0
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 1.8e-95 353.6 180 89.4
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 1.5e-86 323.9 203 74.4
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 3.7e-85 319.3 212 71.7
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 3.7e-85 319.3 356 42.7
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 4.1e-84 315.8 358 42.7
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 5.3e-84 315.5 230 63.5
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.6e-80 303.9 157 85.4
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 1.8e-76 290.4 358 41.1
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 4.8e-69 265.8 198 65.2
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.8e-60 237.3 143 74.8
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 2.5e-57 226.9 126 80.2
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 2.4e-52 210.3 364 31.6
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.1e-49 201.4 126 75.4
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 1.7e-45 187.6 108 78.7
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 7.1e-44 182.2 226 45.6
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 4.6e-43 179.5 127 68.5
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 8.6e-42 175.3 87 93.1
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 3.4e-30 136.7 339 27.4
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 1.3e-26 124.8 81 65.4
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 3.0e-26 123.6 72 73.6
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.1e-25 121.7 69 79.7
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 3.3e-25 120.2 76 76.3
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 5.6e-25 119.4 70 77.1
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 1.1e-20 105.1 209 29.2
MCO04G183 Micromonas commoda HOM05D005066 ORTHO05D006138 1.5e-17 94.7 359 24.5
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 8.1e-16 89.0 148 37.8
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 1.8e-15 87.8 60 61.7
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 2.4e-15 87.4 51 78.4
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.5e-14 84.7 54 75.9
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 2.6e-14 84.0 44 81.8
Mapoly0156s0008 Marchantia polymorpha HOM05D001978 ORTHO05D003036 1.9e-12 77.8 321 22.1
AUR62038170 Chenopodium quinoa HOM05D000030 ORTHO05D000031 2.7e-11 73.9 43 72.1
AUR62018933 Chenopodium quinoa HOM05D000030 ORTHO05D000031 6.0e-11 72.8 68 51.5
Pp3c1_29660 Physcomitrium patens HOM05D001978 ORTHO05D003036 3.3e-09 67.0 238 24.4
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 4.3e-09 66.6 47 61.7
Cre02.g109150 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 7.4e-09 65.9 60 45.0
Pp3c2_17710 Physcomitrium patens HOM05D001978 ORTHO05D003036 7.4e-09 65.9 236 23.7
SGA_v2.0_scaffold275G46594 Striga asiatica HOM05D005066 ORTHO05D406259 1.3e-08 65.1 155 27.1
Nn4g22810 Nelumbo nucifera HOM05D005066 ORTHO05D006138 3.7e-08 63.5 41 63.4
CBR_g4546 Chara braunii HOM05D001978 ORTHO05D003036 4.8e-08 63.2 261 20.7
DCAR_013994 Daucus carota HOM05D000347 ORTHO05D001997 4.8e-08 63.2 285 20.0
PRCOL_00000726 Prasinoderma coloniale HOM05D000924 ORTHO05D001209 3.1e-07 60.5 174 28.7
SEGI_12583 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 3.1e-07 60.5 46 56.5
Lj9A312G29 Lonicera japonica HOM05D000347 ORTHO05D001997 9.0e-07 58.9 102 29.4
vmacro21823 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 9.0e-07 58.9 32 75.0
Rhsim11G0131900 Rhododendron simsii HOM05D000347 ORTHO05D001997 1.2e-06 58.5 163 21.5
BcaC04g19901 Brassica carinata HOM05D000347 ORTHO05D001997 1.5e-06 58.2 279 21.1
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 1.5e-06 58.2 279 21.1
BolC9t57860H Brassica oleracea HOM05D000347 ORTHO05D001997 1.5e-06 58.2 279 21.1
Migut.B00663 Erythranthe guttata HOM05D000347 ORTHO05D001997 1.5e-06 58.2 102 30.4
Ciclev10004888m.g Citrus clementina HOM05D003753 ORTHO05D005081 2.0e-06 57.8 144 29.2
vmacro01787 Vaccinium macrocarpon HOM05D000347 ORTHO05D001997 2.0e-06 57.8 163 21.5
CSS0033183 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 2.6e-06 57.4 144 27.1
Peaxi162Scf00011g00030 Petunia axillaris HOM05D000347 ORTHO05D001997 4.5e-06 56.6 177 22.0
BcaC09g52223 Brassica carinata HOM05D002302 ORTHO05D002728 7.6e-06 55.8 302 20.9
C01p09730 Brassica napus HOM05D002302 ORTHO05D002728 7.6e-06 55.8 302 20.9
SalBow1G5034 Salvia bowleyana HOM05D000347 ORTHO05D001997 1.0e-05 55.5 111 25.2
SalBow6G7087 Salvia bowleyana HOM05D000347 ORTHO05D001997 1.0e-05 55.5 111 25.2


User provided reference genes

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