Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 0.0e+00 1877.4 969 100.0
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 0.0e+00 1431.0 975 78.1
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 6.0e-311 1070.8 954 64.0
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 9.9e-311 1070.1 1035 59.9
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 4.2e-309 1064.7 984 61.8
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.8e-305 1052.0 947 63.5
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 2.5e-301 1038.9 945 61.9
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 6.1e-300 1034.2 946 62.1
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 1.6e-295 1019.6 965 60.5
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 3.1e-291 1005.4 1013 57.9
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 9.8e-290 1000.3 956 60.4
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 4.9e-289 998.0 954 60.9
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 9.2e-288 993.8 902 60.5
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 6.2e-284 981.1 952 59.8
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 3.1e-283 978.8 950 57.8
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 6.8e-283 977.6 940 59.6
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 3.4e-282 975.3 935 58.6
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 2.9e-281 972.2 940 59.0
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.4e-280 969.9 937 59.3
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.4e-280 969.9 961 57.8
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.9e-280 969.5 961 57.6
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.4e-280 968.0 961 57.6
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 3.5e-279 965.3 937 59.1
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 1.0e-278 963.8 940 60.0
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 3.1e-275 952.2 974 58.3
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 2.4e-272 942.6 948 58.6
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 4.1e-272 941.8 948 58.5
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.9e-270 935.3 940 58.5
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 5.2e-267 924.9 940 57.9
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 3.8e-265 918.7 934 55.2
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.1e-264 917.1 947 57.9
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 2.1e-263 912.9 954 57.2
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.5e-263 912.1 970 54.2
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.7e-262 909.8 972 54.1
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 3.3e-261 905.6 939 56.3
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.6e-260 902.1 968 54.1
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 3.1e-259 899.0 942 55.7
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 1.2e-258 897.1 962 55.4
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 1.9e-256 889.8 957 55.2
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 2.1e-255 886.3 957 54.1
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 1.0e-254 884.0 941 55.0
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 8.1e-252 874.4 976 54.4
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 2.7e-247 859.4 949 54.2
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 3.9e-246 855.5 947 53.5
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 1.1e-245 854.0 954 54.4
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 7.4e-245 851.3 949 52.3
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.8e-244 848.6 894 53.1
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 4.8e-244 848.6 963 52.2
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 8.2e-244 847.8 893 53.8
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.8e-243 846.7 893 52.9
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 4.9e-241 838.6 931 53.1
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 1.1e-240 837.4 942 53.1
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 7.1e-240 834.7 673 67.8
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 8.7e-238 827.8 986 52.4
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 4.3e-237 825.5 952 51.7
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 3.7e-236 822.4 947 52.6
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 8.5e-233 811.2 931 53.8
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 3.6e-231 805.8 894 55.6
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 1.5e-229 800.4 928 54.5
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.2e-228 796.6 941 52.1
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 3.8e-225 785.8 934 52.9
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 6.5e-225 785.0 977 50.6
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.1e-223 778.5 913 52.1
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 1.8e-222 776.9 970 50.7
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 2.0e-221 773.5 899 53.5
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.7e-220 770.4 942 51.1
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.2e-220 770.0 793 56.9
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 2.2e-220 770.0 963 49.9
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 4.8e-220 768.8 1002 47.7
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 4.5e-218 762.3 920 50.1
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.0e-217 761.1 911 50.5
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 2.0e-213 746.9 903 50.6
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 5.7e-213 745.3 896 50.8
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 9.7e-213 744.6 851 51.2
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 2.8e-212 743.0 949 49.3
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 8.2e-212 741.5 918 50.9
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 5.9e-210 735.3 913 51.3
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 7.7e-210 734.9 906 48.3
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 1.0e-209 734.6 997 48.0
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.1e-208 731.1 851 50.8
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 9.4e-208 728.0 971 49.0
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 5.2e-206 722.2 923 49.7
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 4.4e-205 719.2 920 49.8
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 7.5e-205 718.4 940 47.7
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 1.3e-204 717.6 875 50.4
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 2.8e-204 716.5 940 48.8
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 1.2e-202 711.1 905 48.6
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 1.7e-201 707.2 874 47.7
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 2.9e-201 706.4 875 47.9
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 5.0e-201 705.7 893 49.7
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 4.0e-198 696.0 674 59.1
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 6.3e-196 688.7 905 48.3
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 2.0e-194 683.7 616 63.3
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 5.0e-193 679.1 913 46.5
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 5.5e-192 675.6 929 47.0
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.8e-188 663.3 914 47.3
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.1e-187 659.8 947 46.7
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 1.3e-185 654.4 897 48.0
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 2.3e-185 653.7 893 46.7
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 3.6e-183 646.4 937 45.1
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 4.9e-180 636.0 867 47.5
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 5.4e-179 632.5 973 45.2
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 7.0e-179 632.1 930 45.5
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 9.2e-179 631.7 871 47.8
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.1e-174 618.2 949 43.4
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 1.8e-174 617.5 876 46.8
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 2.3e-174 617.1 962 44.5
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.2e-173 614.8 908 44.4
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 1.3e-172 611.3 876 46.0
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 7.0e-171 605.5 938 44.0
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 2.5e-168 597.0 952 43.8
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 2.0e-165 587.4 983 42.1
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 3.2e-163 580.1 888 45.7
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 7.1e-163 578.9 952 42.4
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.6e-162 576.2 722 50.7
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.1e-160 571.6 957 42.8
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 2.1e-159 567.4 695 52.7
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 1.8e-158 564.3 929 44.1
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 5.4e-155 552.7 505 62.4
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 9.2e-155 552.0 944 42.4
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 9.2e-155 552.0 944 42.4
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 2.3e-153 547.4 925 42.6
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 8.7e-153 545.4 966 41.7
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 1.2e-151 541.6 962 41.7
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.0e-149 534.3 632 51.9
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.6e-149 533.9 694 46.5
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 7.6e-149 532.3 941 42.8
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 1.3e-148 531.6 962 42.1
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 1.1e-147 528.5 962 42.1
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 2.4e-147 527.3 945 41.9
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 4.2e-147 526.6 881 41.4
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 6.0e-146 522.7 971 41.6
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 6.0e-146 522.7 945 41.9
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 7.8e-146 522.3 971 41.4
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 3.6e-143 513.5 928 40.9
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 4.5e-141 506.5 825 41.6
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 2.1e-138 497.7 475 59.8
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 4.0e-134 483.4 823 40.3
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.5e-131 473.0 444 60.6
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 5.5e-131 473.0 943 38.7
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 4.0e-126 456.8 816 40.4
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 4.6e-122 443.4 863 39.5
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 4.5e-117 426.8 908 34.8
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 5.0e-116 423.3 824 39.0
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 9.7e-104 382.5 581 44.4
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 4.1e-102 377.1 632 43.8
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 5.2e-97 360.1 896 34.3
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 5.9e-93 346.7 283 65.7
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 1.0e-92 345.9 1032 32.3
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 5.5e-91 340.1 337 57.9
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 5.2e-81 307.0 763 33.9
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 1.3e-79 302.4 449 46.1
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.7e-79 302.0 807 33.1
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 6.6e-76 290.0 381 47.0
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.9e-75 288.5 763 33.4
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 5.8e-64 250.4 416 45.9
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 1.3e-63 249.2 220 63.2
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.4e-62 245.7 995 27.8
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 1.0e-60 239.6 750 32.3
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 5.0e-60 237.3 281 50.5
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 8.1e-58 229.9 356 43.5
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 5.2e-57 227.3 282 51.4
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 7.8e-45 186.8 583 30.9
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 1.0e-44 186.4 560 29.6
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 4.3e-43 181.0 120 71.7
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 9.9e-40 169.9 264 44.7
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.1e-38 166.4 291 41.2
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 3.2e-38 164.9 172 55.2
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 1.2e-32 146.4 103 68.9
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 1.7e-28 132.5 114 59.6
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 5.6e-27 127.5 153 51.0
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 2.7e-21 108.6 90 75.6
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 5.6e-19 100.9 118 49.2
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 5.3e-17 94.4 89 53.9
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 6.9e-17 94.0 118 40.7
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.0e-16 92.4 125 47.2
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 1.4e-14 86.3 145 41.4
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 1.2e-13 83.2 126 43.7
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.8e-12 79.3 44 79.5
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.1e-09 68.6 173 35.8
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 1.5e-08 66.2 147 30.6


User provided reference genes

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