Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G110201 Manihot esculenta HOM05D005088 ORTHO05D006914 3.0e-106 388.7 217 100.0
Manes.15G152700 Manihot esculenta HOM05D005088 ORTHO05D006914 3.4e-57 225.7 228 59.2
Hma1.2p1_0587F.1_g183900 Hydrangea macrophylla HOM05D005088 ORTHO05D006914 1.1e-23 114.4 83 72.3
CSS0015220 Camellia sinensis var. sinensis HOM05D005088 ORTHO05D006914 1.4e-23 114.0 82 70.7
Thhalv10006186m.g Eutrema salsugineum HOM05D005088 ORTHO05D006914 5.1e-21 105.5 87 64.4
Aa31LG2G11590 Aethionema arabicum HOM05D005088 ORTHO05D006914 1.5e-20 104.0 86 62.8
Sp5g06120 Schrenkiella parvula HOM05D005088 ORTHO05D006914 1.5e-20 104.0 72 72.2
THA.LOC104820717 Tarenaya hassleriana HOM05D005088 ORTHO05D006914 1.5e-20 104.0 63 79.4
TWI63G0383 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 1.9e-20 103.6 173 46.8
ECA236G2300 Erigeron canadensis HOM05D005088 ORTHO05D006914 2.5e-20 103.2 82 63.4
Cpa.g.sc130.68 Carica papaya HOM05D005088 ORTHO05D006914 5.7e-20 102.1 212 40.1
vmacro05886 Vaccinium macrocarpon HOM05D005088 ORTHO05D006914 9.7e-20 101.3 72 72.2
PGR142G2056 Punica granatum HOM05D005088 ORTHO05D006914 1.3e-19 100.9 150 42.7
TWI73G1260 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 1.3e-19 100.9 89 60.7
CiPaw.03G046700 Carya illinoinensis HOM05D005088 ORTHO05D006914 2.8e-19 99.8 100 55.0
ATR1136G111 Amborella trichopoda HOM05D005088 ORTHO05D006914 3.7e-19 99.4 73 68.5
Ciclev10017686m.g Citrus clementina HOM05D005088 ORTHO05D006914 6.3e-19 98.6 55 83.6
Nn2g12382 Nelumbo nucifera HOM05D005088 ORTHO05D006914 6.3e-19 98.6 80 63.8
Cc00_g04470 Coffea canephora HOM05D005088 ORTHO05D006914 1.1e-18 97.8 82 61.0
Lsat_1_v5_gn_7_9521 Lactuca sativa HOM05D005088 ORTHO05D006914 1.1e-18 97.8 83 57.8
arahy.Tifrunner.gnm1.ann1.NQR6QW Arachis hypogaea HOM05D005088 ORTHO05D006914 1.4e-18 97.4 56 82.1
MELO3C021598.2 Cucumis melo HOM05D005088 ORTHO05D006914 2.4e-18 96.7 239 35.1
Ciclev10015979m.g Citrus clementina HOM05D005088 ORTHO05D006914 4.1e-18 95.9 144 43.1
AT3G56510 Arabidopsis thaliana HOM05D005088 ORTHO05D006914 5.3e-18 95.5 72 65.3
TAR371G0548 Trochodendron aralioides HOM05D005088 ORTHO05D006914 5.3e-18 95.5 81 61.7
GSVIVG01008659001 Vitis vinifera HOM05D005088 ORTHO05D006914 6.9e-18 95.1 80 62.5
SGA_v2.0_scaffold18G08253 Striga asiatica HOM05D005088 ORTHO05D006914 1.2e-17 94.4 52 82.7
CsaV3_5G026950 Cucumis sativus L. HOM05D005088 ORTHO05D006914 2.6e-17 93.2 226 34.5
HanXRQChr04g0122711 Helianthus annuus HOM05D005088 ORTHO05D006914 2.6e-17 93.2 82 53.7
Aqoxy5G03675 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 3.4e-17 92.8 64 67.2
Aqoxy7G00744 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 3.4e-17 92.8 81 60.5
arahy.Tifrunner.gnm1.ann1.XI631Y Arachis hypogaea HOM05D005088 ORTHO05D006914 3.4e-17 92.8 97 57.7
Lalb_Chr06g0174471 Lupinus albus HOM05D005088 ORTHO05D006914 4.5e-17 92.4 76 63.2
Atru.chr6.2443 Acer truncatum HOM05D005088 ORTHO05D006914 5.9e-17 92.0 47 87.2
Duzib147G1185 Durio zibethinus HOM05D005088 ORTHO05D006914 5.9e-17 92.0 52 82.7
DCAR_011267 Daucus carota HOM05D005088 ORTHO05D006914 7.7e-17 91.7 76 61.8
Oeu013966.1 Olea europaea HOM05D005088 ORTHO05D006914 7.7e-17 91.7 50 84.0
Ah.15g098720 Amaranthus hybridus HOM05D005088 ORTHO05D006914 1.7e-16 90.5 64 67.2
CARHR166630 Cardamine hirsuta HOM05D005088 ORTHO05D006914 1.7e-16 90.5 49 83.7
Carub.0005s2328 Capsella rubella HOM05D005088 ORTHO05D006914 2.2e-16 90.1 86 52.3
Nitab4.5_0001562g0080 Nicotiana tabacum HOM05D005088 ORTHO05D006914 2.2e-16 90.1 81 55.6
Peaxi162Scf00420g00135 Petunia axillaris HOM05D005088 ORTHO05D006914 2.2e-16 90.1 85 57.6
Migut.H00031 Erythranthe guttata HOM05D005088 ORTHO05D006914 3.8e-16 89.4 50 78.0
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 5.0e-16 89.0 52 76.9
BcaNung07365 Brassica carinata HOM05D005088 ORTHO05D006914 5.0e-16 89.0 48 85.4
ClCG09G019430 Citrullus lanatus HOM05D005088 ORTHO05D006914 5.0e-16 89.0 219 33.8
Nitab4.5_0001357g0120 Nicotiana tabacum HOM05D005088 ORTHO05D006914 6.5e-16 88.6 85 52.9
Actinidia36135 Actinidia chinensis HOM05D005088 ORTHO05D006914 1.4e-15 87.4 82 57.3
A09p49430 Brassica napus HOM05D005088 ORTHO05D006914 1.4e-15 87.4 47 85.1
BraA09t40396Z Brassica rapa HOM05D005088 ORTHO05D006914 1.4e-15 87.4 47 85.1
Medtr6g021760 Medicago truncatula HOM05D005088 ORTHO05D006914 1.4e-15 87.4 47 83.0
AL5G37860 Arabidopsis lyrata HOM05D005088 ORTHO05D006914 1.9e-15 87.0 51 76.5
Sabra16G0221300 Salix brachista HOM05D005088 ORTHO05D006914 1.9e-15 87.0 72 59.7
SalBow8G2200 Salvia bowleyana HOM05D005088 ORTHO05D006914 1.9e-15 87.0 51 76.5
Potri.001G341300 Populus trichocarpa HOM05D005088 ORTHO05D006914 2.5e-15 86.7 92 52.2
RhsimUnG0006300 Rhododendron simsii HOM05D005088 ORTHO05D006914 3.2e-15 86.3 49 81.6
RhsimUnG0087300 Rhododendron simsii HOM05D005088 ORTHO05D006914 3.2e-15 86.3 49 81.6
BcaC07g39962 Brassica carinata HOM05D005088 ORTHO05D006914 4.2e-15 85.9 46 84.8
BolC8t50800H Brassica oleracea HOM05D005088 ORTHO05D006914 4.2e-15 85.9 46 84.8
CANSAT64G2170 Cannabis sativa HOM05D005088 ORTHO05D006914 5.5e-15 85.5 85 52.9
Nitab4.5_0006478g0030 Nicotiana tabacum HOM05D005088 ORTHO05D006914 5.5e-15 85.5 85 51.8
PSO782G2229 Papaver somniferum HOM05D005088 ORTHO05D006914 7.2e-15 85.1 60 70.0
CANSAT64G1390 Cannabis sativa HOM05D005088 ORTHO05D006914 1.2e-14 84.3 84 52.4
DCAR_001396 Daucus carota HOM05D005088 ORTHO05D006914 1.2e-14 84.3 57 68.4
Ca_04381_v3 Cicer arietinum L. HOM05D005088 ORTHO05D006914 2.1e-14 83.6 44 81.8
unitig_748.g6973 Utricularia gibba HOM05D005088 ORTHO05D006914 2.1e-14 83.6 89 51.7
SalBow4G2808 Salvia bowleyana HOM05D005088 ORTHO05D006914 2.7e-14 83.2 47 78.7
Sc14g0003070 Simmondsia chinensis HOM05D005088 ORTHO05D006914 2.7e-14 83.2 55 70.9
Thecc.04G021300 Theobroma cacao HOM05D005088 ORTHO05D006914 2.7e-14 83.2 55 72.7
Lj7A602T41 Lonicera japonica HOM05D005088 ORTHO05D006914 4.6e-14 82.4 46 80.4
Nitab4.5_0006683g0110 Nicotiana tabacum HOM05D005088 ORTHO05D006914 4.6e-14 82.4 85 49.4
Prupe.3G295300 Prunus persica HOM05D005088 ORTHO05D006914 6.1e-14 82.0 57 64.9
arahy.Tifrunner.gnm1.ann1.NBA2EB Arachis hypogaea HOM05D005088 ORTHO05D006914 7.9e-14 81.6 43 81.4
Psat5g064920 Pisum sativum HOM05D005088 ORTHO05D006914 7.9e-14 81.6 44 79.5
Sopen10g004000 Solanum pennellii HOM05D005088 ORTHO05D006914 1.0e-13 81.3 85 51.8
Psat1g081640 Pisum sativum HOM05D005088 ORTHO05D006914 1.4e-13 80.9 89 50.6
Gohir.A07G224400 Gossypium hirsutum HOM05D005088 ORTHO05D006914 1.8e-13 80.5 45 80.0
PGSC0003DMG400018652 Solanum tuberosum HOM05D005088 ORTHO05D006914 1.8e-13 80.5 81 54.3
PGSC0003DMG400021851 Solanum tuberosum HOM05D005088 ORTHO05D006914 1.8e-13 80.5 85 51.8
Haze_14769 Corylus avellana HOM05D005088 ORTHO05D006914 3.0e-13 79.7 213 32.9
Solyc10g008130.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 3.0e-13 79.7 85 51.8
Sed0009164 Sechium edule HOM05D005088 ORTHO05D006914 3.9e-13 79.3 89 48.3
SEGI_26999 Sequoiadendron giganteum HOM05D005088 ORTHO05D006914 3.9e-13 79.3 71 60.6
C08p31790 Brassica napus HOM05D005088 ORTHO05D006914 5.1e-13 79.0 42 85.7
Gohir.D07G231700 Gossypium hirsutum HOM05D005088 ORTHO05D006914 6.7e-13 78.6 45 77.8
Gorai.001G266900 Gossypium raimondii HOM05D005088 ORTHO05D006914 6.7e-13 78.6 45 77.8
Sopen01g054060 Solanum pennellii HOM05D005088 ORTHO05D006914 6.7e-13 78.6 72 59.7
Lj4g0026117 Lotus japonicus HOM05D005088 ORTHO05D006914 8.8e-13 78.2 41 78.0
PSO063G5784 Papaver somniferum HOM05D005088 ORTHO05D006914 1.1e-12 77.8 45 80.0
CDE09G0918 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 1.5e-12 77.4 87 47.1
PSO210G5838 Papaver somniferum HOM05D005088 ORTHO05D006914 2.0e-12 77.0 46 76.1
HPP92_010722 Vanilla planifolia HOM05D005088 ORTHO05D006914 2.0e-12 77.0 58 58.6
VMungo0464G1582 Vigna mungo HOM05D005088 ORTHO05D006914 2.6e-12 76.6 56 69.6
CDE02G1254 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 3.3e-12 76.3 68 54.4
Glyma.19G052200 Glycine max HOM05D005088 ORTHO05D006914 3.3e-12 76.3 45 77.8
EL10Ac6g15396 Beta vulgaris HOM05D005088 ORTHO05D006914 4.4e-12 75.9 41 82.9
Phvul.004G060300 Phaseolus vulgaris HOM05D005088 ORTHO05D006914 7.4e-12 75.1 39 82.1
PSO754G0075 Papaver somniferum HOM05D005088 ORTHO05D006914 9.7e-12 74.7 60 63.3
Glyma.05G115100 Glycine max HOM05D005088 ORTHO05D006914 1.7e-11 73.9 77 57.1
PSO210G1672 Papaver somniferum HOM05D005088 ORTHO05D006914 2.2e-11 73.6 44 77.3
Pp3c15_21890 Physcomitrium patens HOM05D005088 ORTHO05D006914 4.8e-11 72.4 100 47.0
MD09G1021000 Malus domestica HOM05D005088 ORTHO05D006914 1.8e-10 70.5 55 61.8
MD17G1021200 Malus domestica HOM05D005088 ORTHO05D006914 1.8e-10 70.5 55 61.8
SHI10481 Sapria himalayana HOM05D005088 ORTHO05D006914 5.3e-10 68.9 50 60.0
TAR629G1146 Trochodendron aralioides HOM05D005088 ORTHO05D006914 9.1e-10 68.2 72 54.2
Os07g0662600 Oryza sativa ssp. japonica HOM05D005088 ORTHO05D006914 2.6e-09 66.6 49 61.2
QL02p073814 Quercus lobata HOM05D005088 ORTHO05D006914 2.6e-09 66.6 210 33.3
Zm00001eb110920 Zea mays HOM05D005088 ORTHO05D006914 1.3e-08 64.3 50 58.0
CBR_g229 Chara braunii HOM05D005088 ORTHO05D006914 2.2e-08 63.5 71 46.5
Mapoly0020s0128 Marchantia polymorpha HOM05D005088 ORTHO05D006914 2.2e-08 63.5 38 71.1
FAN05G1017 Fragaria x ananassa HOM05D005088 ORTHO05D006914 8.5e-08 61.6 48 54.2
Cre06.g264500 Chlamydomonas reinhardtii HOM05D005088 ORTHO05D006914 1.1e-07 61.2 61 47.5
FvH4_6g52000 Fragaria vesca HOM05D005088 ORTHO05D006914 1.4e-07 60.8 48 54.2
FAN02G1545 Fragaria x ananassa HOM05D005088 ORTHO05D006914 1.4e-07 60.8 48 54.2
FAN14G4588 Fragaria x ananassa HOM05D005088 ORTHO05D006914 1.4e-07 60.8 48 54.2
Sc09g0007140 Simmondsia chinensis HOM05D005088 ORTHO05D389638 1.4e-07 60.8 49 61.2
RcHm_v2.0_Chr2g0173471 Rosa chinensis HOM05D005088 ORTHO05D006914 7.2e-07 58.5 57 50.9
MCO13G391 Micromonas commoda HOM05D005088 ORTHO05D006914 9.4e-07 58.2 56 55.4
FAN09G0922 Fragaria x ananassa HOM05D005088 ORTHO05D006914 1.6e-06 57.4 48 52.1
BcaNung07083 Brassica carinata HOM05D005088 ORTHO05D006914 7.9e-06 55.1 28 85.7


User provided reference genes

Program Settings