Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G086000 Manihot esculenta HOM05D003836 ORTHO05D004556 0.0e+00 1162.9 611 100.0
Manes.15G136900 Manihot esculenta HOM05D003836 ORTHO05D004556 4.5e-280 967.6 611 82.8
Ciclev10014689m.g Citrus clementina HOM05D003836 ORTHO05D004556 1.3e-223 780.0 617 69.2
Cfa015051 Carpinus fangiana HOM05D003836 ORTHO05D004556 5.7e-219 764.6 655 67.5
TWI74G0623 Tripterygium wilfordii HOM05D003836 ORTHO05D004556 9.1e-217 757.3 627 68.3
GSVIVG01011621001 Vitis vinifera HOM05D003836 ORTHO05D004556 9.1e-217 757.3 634 68.5
Potri.010G103400 Populus trichocarpa HOM05D003836 ORTHO05D004556 5.9e-216 754.6 616 70.6
FvH4_4g33240 Fragaria vesca HOM05D003836 ORTHO05D004556 2.3e-215 752.7 621 67.6
Gorai.008G170400 Gossypium raimondii HOM05D003836 ORTHO05D004556 4.2e-214 748.4 629 67.7
Gorai.013G030000 Gossypium raimondii HOM05D003836 ORTHO05D004556 5.5e-214 748.0 622 68.3
CiPaw.05G187900 Carya illinoinensis HOM05D003836 ORTHO05D004556 5.2e-212 741.5 652 64.3
RcHm_v2.0_Chr4g0442391 Rosa chinensis HOM05D003836 ORTHO05D004556 1.2e-211 740.3 616 68.0
TAR374G0617 Trochodendron aralioides HOM05D003836 ORTHO05D004556 6.3e-210 734.6 640 63.9
Gohir.A13G027900 Gossypium hirsutum HOM05D003836 ORTHO05D004556 4.1e-209 731.9 560 70.2
FAN17G2261 Fragaria x ananassa HOM05D003836 ORTHO05D004556 5.4e-209 731.5 622 66.2
FAN12G1258 Fragaria x ananassa HOM05D003836 ORTHO05D004556 2.0e-208 729.6 622 66.1
Glyma.04G189300 Glycine max HOM05D003836 ORTHO05D004556 4.5e-208 728.4 627 63.8
Prupe.1G335900 Prunus persica HOM05D003836 ORTHO05D004556 7.8e-208 727.6 617 66.0
MD16G1015700 Malus domestica HOM05D003836 ORTHO05D004556 1.0e-207 727.2 620 64.7
QL03p038287 Quercus lobata HOM05D003836 ORTHO05D004556 1.3e-207 726.9 683 62.4
FAN22G0514 Fragaria x ananassa HOM05D003836 ORTHO05D004556 2.3e-207 726.1 618 66.7
Atru.chr7.2694 Acer truncatum HOM05D003836 ORTHO05D004556 2.9e-207 725.7 616 65.1
FAN07G2679 Fragaria x ananassa HOM05D003836 ORTHO05D004556 3.8e-207 725.3 618 66.3
Lj1g0024673 Lotus japonicus HOM05D003836 ORTHO05D004556 1.1e-206 723.8 626 65.5
CsaV3_7G022080 Cucumis sativus L. HOM05D003836 ORTHO05D004556 8.0e-205 717.6 655 63.8
CANSAT78G2203 Cannabis sativa HOM05D003836 ORTHO05D004556 6.8e-204 714.5 649 62.4
Glyma.06G176300 Glycine max HOM05D003836 ORTHO05D004556 8.9e-204 714.1 629 63.9
Ca_16122_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 1.5e-203 713.4 647 61.2
Haze_10840 Corylus avellana HOM05D003836 ORTHO05D004556 1.7e-202 709.9 655 63.5
Nn4g24475 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.1e-201 707.2 644 63.4
Thecc.02G307000 Theobroma cacao HOM05D003836 ORTHO05D004556 1.1e-201 707.2 631 65.6
Medtr3g076570 Medicago truncatula HOM05D003836 ORTHO05D004556 1.8e-201 706.4 626 62.1
TPR.G35600 Trifolium pratense HOM05D003836 ORTHO05D004556 1.8e-201 706.4 655 60.8
ClCG11G007570 Citrullus lanatus HOM05D003836 ORTHO05D004556 3.5e-200 702.2 655 62.1
Sabra10G0076000 Salix brachista HOM05D003836 ORTHO05D004556 3.5e-200 702.2 639 65.7
Phvul.009G172600 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 6.6e-199 698.0 629 63.0
Lalb_Chr11g0070001 Lupinus albus HOM05D003836 ORTHO05D004556 8.6e-199 697.6 636 60.1
Duzib251G0897 Durio zibethinus HOM05D003836 ORTHO05D004556 4.3e-198 695.3 624 65.7
TAR622G1236 Trochodendron aralioides HOM05D003836 ORTHO05D004556 7.3e-198 694.5 641 61.3
VMungo1309G0617 Vigna mungo HOM05D003836 ORTHO05D004556 7.3e-198 694.5 624 62.5
Migut.E00502 Erythranthe guttata HOM05D003836 ORTHO05D004556 9.5e-198 694.1 621 61.2
Nn3g18432 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.2e-197 693.7 642 63.2
Gohir.D13G026700 Gossypium hirsutum HOM05D003836 ORTHO05D004556 2.8e-197 692.6 555 68.3
Sed0017171 Sechium edule HOM05D003836 ORTHO05D004556 1.4e-196 690.3 656 61.1
PGR142G3191 Punica granatum HOM05D003836 ORTHO05D004556 3.1e-196 689.1 627 62.8
Aqoxy6G01037 Aquilegia oxysepala HOM05D003836 ORTHO05D004556 1.9e-193 679.9 483 72.0
PSO782G5172 Papaver somniferum HOM05D003836 ORTHO05D004556 1.6e-192 676.8 615 62.4
PSO063G7099 Papaver somniferum HOM05D003836 ORTHO05D004556 2.7e-192 676.0 616 62.3
Dinv02294 Davidia involucrata HOM05D003836 ORTHO05D004556 1.0e-191 674.1 426 81.0
Dinv32673 Davidia involucrata HOM05D003836 ORTHO05D004556 1.3e-191 673.7 636 61.2
arahy.Tifrunner.gnm1.ann1.FHB42U Arachis hypogaea HOM05D003836 ORTHO05D004556 5.0e-191 671.8 647 58.9
arahy.Tifrunner.gnm1.ann1.THT645 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.9e-190 669.8 651 58.5
Carub.0002s1445 Capsella rubella HOM05D003836 ORTHO05D004556 4.3e-190 668.7 630 60.5
Duzib268G0198 Durio zibethinus HOM05D003836 ORTHO05D004556 5.6e-190 668.3 630 62.1
AT1G67960 Arabidopsis thaliana HOM05D003836 ORTHO05D004556 7.3e-190 667.9 628 59.9
MELO3C013236.2 Cucumis melo HOM05D003836 ORTHO05D004556 1.2e-189 667.2 634 62.3
CARHR060610 Cardamine hirsuta HOM05D003836 ORTHO05D004556 3.6e-189 665.6 639 59.9
AL2G26960 Arabidopsis lyrata HOM05D003836 ORTHO05D004556 1.4e-188 663.7 632 60.3
Atru.chr11.806 Acer truncatum HOM05D003836 ORTHO05D004556 1.8e-188 663.3 396 84.1
Sp5g22940 Schrenkiella parvula HOM05D003836 ORTHO05D004556 6.8e-188 661.4 648 58.8
Hma1.2p1_2859F.1_g329510 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 1.5e-187 660.2 402 81.8
Eucgr.G02079 Eucalyptus grandis HOM05D003836 ORTHO05D004556 1.7e-186 656.8 645 61.4
arahy.Tifrunner.gnm1.ann1.HCE13Z Arachis hypogaea HOM05D003836 ORTHO05D004556 4.9e-186 655.2 630 59.2
Gohir.A12G154400 Gossypium hirsutum HOM05D003836 ORTHO05D004556 8.3e-186 654.4 554 66.4
COL.COLO4_27608 Corchorus olitorius HOM05D003836 ORTHO05D004556 7.8e-184 647.9 563 67.5
Gohir.D12G157600 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.5e-182 643.7 565 66.4
Psat5g116920 Pisum sativum HOM05D003836 ORTHO05D004556 1.2e-181 640.6 609 60.1
Cc11_g06410 Coffea canephora HOM05D003836 ORTHO05D004556 3.4e-179 632.5 638 57.7
Lsat_1_v5_gn_3_104360 Lactuca sativa HOM05D003836 ORTHO05D004556 1.7e-178 630.2 626 59.4
Thhalv10018303m.g Eutrema salsugineum HOM05D003836 ORTHO05D004556 1.1e-177 627.5 631 57.8
Cpa.g.sc2.157 Carica papaya HOM05D003836 ORTHO05D004556 2.4e-177 626.3 579 64.2
A07p34480 Brassica napus HOM05D003836 ORTHO05D004556 1.7e-175 620.2 604 58.4
ECA246G1487 Erigeron canadensis HOM05D003836 ORTHO05D004556 5.1e-175 618.6 414 76.3
DCAR_023556 Daucus carota HOM05D003836 ORTHO05D004556 3.3e-174 615.9 623 56.5
Glyma.07G191900 Glycine max HOM05D003836 ORTHO05D004556 2.0e-171 606.7 439 70.8
Aa31sc536G20 Aethionema arabicum HOM05D003836 ORTHO05D004556 9.9e-171 604.4 671 53.2
EL10Ac8g19453 Beta vulgaris HOM05D003836 ORTHO05D004556 2.9e-170 602.8 673 56.8
Ah.02g131240 Amaranthus hybridus HOM05D003836 ORTHO05D004556 2.7e-168 596.3 414 73.2
Zm00001eb216180 Zea mays HOM05D003836 ORTHO05D004556 1.6e-165 587.0 613 54.5
SalBow2G2298 Salvia bowleyana HOM05D003836 ORTHO05D004556 4.5e-163 578.9 644 53.6
BcaB03g15387 Brassica carinata HOM05D003836 ORTHO05D004556 7.6e-163 578.2 628 54.1
ATR0021G013 Amborella trichopoda HOM05D003836 ORTHO05D004556 9.9e-163 577.8 641 53.0
TPR.G32436 Trifolium pratense HOM05D003836 ORTHO05D004556 5.1e-159 565.5 405 68.9
Glyma.13G184600 Glycine max HOM05D003836 ORTHO05D004556 3.2e-153 546.2 390 71.0
SGA_v2.0_scaffold23G10153 Striga asiatica HOM05D003836 ORTHO05D004556 3.9e-151 539.3 611 53.8
arahy.Tifrunner.gnm1.ann1.36Q8NS Arachis hypogaea HOM05D003836 ORTHO05D004556 3.7e-149 532.7 625 51.0
BcaC08g46221 Brassica carinata HOM05D003836 ORTHO05D004556 8.2e-149 531.6 629 52.0
BolC6t39223H Brassica oleracea HOM05D003836 ORTHO05D004556 2.6e-147 526.6 584 53.9
VMungo0251G2034 Vigna mungo HOM05D003836 ORTHO05D004556 1.3e-146 524.2 559 54.6
Psat7g111040 Pisum sativum HOM05D003836 ORTHO05D004556 1.6e-144 517.3 364 71.2
unitig_8.g4015 Utricularia gibba HOM05D003836 ORTHO05D004556 1.8e-143 513.8 619 50.1
Lj6A734G74 Lonicera japonica HOM05D003836 ORTHO05D004556 1.2e-136 491.1 447 59.5
Phvul.002G223900 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 1.6e-136 490.7 407 64.1
Os03g0715400 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 4.6e-136 489.2 423 62.6
Medtr4g090465 Medicago truncatula HOM05D003836 ORTHO05D004556 1.0e-130 471.5 341 69.2
arahy.Tifrunner.gnm1.ann1.6NWB5V Arachis hypogaea HOM05D003836 ORTHO05D004556 1.4e-129 467.6 533 52.7
Pp3c12_1050 Physcomitrium patens HOM05D003836 ORTHO05D004556 3.2e-129 466.5 446 54.7
Mapoly0019s0007 Marchantia polymorpha HOM05D003836 ORTHO05D004556 7.9e-128 461.8 496 50.0
Solyc06g051440.4 Solanum lycopersicum HOM05D003836 ORTHO05D004556 1.1e-124 451.4 285 78.6
SHI04351 Sapria himalayana HOM05D003836 ORTHO05D004556 9.1e-124 448.4 354 66.7
BcaB03g15147 Brassica carinata HOM05D003836 ORTHO05D004556 2.2e-122 443.7 581 48.5
C06p42030 Brassica napus HOM05D003836 ORTHO05D004556 3.0e-119 433.3 583 47.7
Nitab4.5_0001516g0010 Nicotiana tabacum HOM05D003836 ORTHO05D004556 1.5e-118 431.0 753 41.6
Lalb_Chr23g0273371 Lupinus albus HOM05D003836 ORTHO05D004556 3.7e-117 426.4 472 54.4
AUR62033051 Chenopodium quinoa HOM05D003836 ORTHO05D004556 7.0e-108 395.6 547 49.9
Oeu036124.4 Olea europaea HOM05D003836 ORTHO05D004556 1.1e-105 388.3 277 73.3
arahy.Tifrunner.gnm1.ann1.0AB4R7 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.4e-103 381.3 535 48.2
MD13G1017500 Malus domestica HOM05D003836 ORTHO05D004556 9.8e-102 375.2 416 54.1
AagrBONN_evm.TU.Sc2ySwM_228.1822 Anthoceros agrestis HOM05D003836 ORTHO05D004556 2.8e-93 347.1 331 54.1
Sopen06g017410 Solanum pennellii HOM05D003836 ORTHO05D004556 2.1e-88 330.9 408 52.0
SMO358G0292 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 3.1e-87 327.0 418 44.3
Peaxi162Scf00825g00424 Petunia axillaris HOM05D003836 ORTHO05D004556 1.7e-85 321.2 401 53.6
Sc10g0004880 Simmondsia chinensis HOM05D003836 ORTHO05D004556 1.9e-84 317.8 192 80.7
HanXRQChr15g0473551 Helianthus annuus HOM05D003836 ORTHO05D004556 1.6e-83 314.7 214 72.9
MBI11_g36366_MAGBIO Magnolia biondii HOM05D003836 ORTHO05D004556 1.6e-83 314.7 400 50.2
Nitab4.5_0001227g0030 Nicotiana tabacum HOM05D003836 ORTHO05D004556 4.3e-81 306.6 625 39.0
Sc10g0004870 Simmondsia chinensis HOM05D003836 ORTHO05D004556 1.6e-80 304.7 410 50.0
Lalb_Chr23g0273381 Lupinus albus HOM05D003836 ORTHO05D004556 3.3e-73 280.4 171 78.9
CSS0006660 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 3.1e-71 273.9 161 80.7
AUR62042201 Chenopodium quinoa HOM05D003836 ORTHO05D004556 1.4e-68 265.0 548 38.7
HanXRQChr15g0473541 Helianthus annuus HOM05D003836 ORTHO05D004556 3.9e-66 256.9 161 74.5
BcaC08g46015 Brassica carinata HOM05D003836 ORTHO05D004556 1.9e-65 254.6 188 71.8
Peaxi162Scf00825g00423 Petunia axillaris HOM05D003836 ORTHO05D004556 4.3e-65 253.4 160 76.2
DCAR_030293 Daucus carota HOM05D003836 ORTHO05D004556 5.6e-65 253.1 360 43.3
Hma1.2p1_1450F.1_g284160 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 2.1e-59 234.6 333 51.1
C01p04020 Brassica napus HOM05D003836 ORTHO05D004556 3.3e-57 227.3 180 62.8
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 3.5e-51 207.2 145 73.1
MD13G1017700 Malus domestica HOM05D003836 ORTHO05D004556 4.6e-51 206.8 124 78.2
Nn8g39028 Nelumbo nucifera HOM05D003836 ORTHO05D004556 5.3e-47 193.4 140 72.1
Hma1.2p1_0658F.1_g197210 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 2.2e-45 188.0 330 44.5
arahy.Tifrunner.gnm1.ann1.I9RBIQ Arachis hypogaea HOM05D003836 ORTHO05D004556 2.4e-44 184.5 178 59.0
MCO03G489 Micromonas commoda HOM05D003836 ORTHO05D004556 2.4e-44 184.5 382 33.5
PRCOL_00001721 Prasinoderma coloniale HOM05D003836 ORTHO05D004556 4.6e-43 180.3 383 32.9
Ca_18504_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 1.3e-42 178.7 163 62.0
Gohir.D13G133800 Gossypium hirsutum HOM05D003836 ORTHO05D004556 3.3e-41 174.1 145 64.1
Nn6g35439 Nelumbo nucifera HOM05D003836 ORTHO05D004556 3.3e-41 174.1 147 66.0
Nn6g35150 Nelumbo nucifera HOM05D003836 ORTHO05D004556 7.4e-41 172.9 119 75.6
CAN.G2032.2 Capsicum annuum HOM05D003836 ORTHO05D004556 4.2e-36 157.1 148 58.8
C06p38100 Brassica napus HOM05D003836 ORTHO05D004556 1.9e-33 148.3 239 40.2
BolC6t38907H Brassica oleracea HOM05D003836 ORTHO05D004556 1.9e-33 148.3 239 40.2
HPP92_020596 Vanilla planifolia HOM05D003836 ORTHO05D004556 4.3e-33 147.1 288 40.3
Cre02.g091000 Chlamydomonas reinhardtii HOM05D003836 ORTHO05D004556 2.2e-29 134.8 487 24.0
Hund15725 Selenicereus undatus HOM05D003836 ORTHO05D004556 1.9e-28 131.7 258 40.7
arahy.Tifrunner.gnm1.ann1.MA62LX Arachis hypogaea HOM05D003836 ORTHO05D004556 5.5e-28 130.2 87 74.7
Cpa.g.sc2.159 Carica papaya HOM05D003836 ORTHO05D004556 3.1e-23 114.4 69 78.3
arahy.Tifrunner.gnm1.ann1.ANFG2H Arachis hypogaea HOM05D003836 ORTHO05D004556 5.3e-23 113.6 92 65.2
Cfa025144 Carpinus fangiana HOM05D003836 ORTHO05D004556 9.0e-23 112.8 295 32.9
RcHm_v2.0_Chr2g0114371 Rosa chinensis HOM05D003836 ORTHO05D004556 3.4e-22 110.9 95 66.3
arahy.Tifrunner.gnm1.ann1.2AK3X2 Arachis hypogaea HOM05D003836 ORTHO05D004556 4.5e-22 110.5 92 62.0
arahy.Tifrunner.gnm1.ann1.62N7D7 Arachis hypogaea HOM05D003836 ORTHO05D004556 4.5e-22 110.5 92 62.0
arahy.Tifrunner.gnm1.ann1.6IM5NS Arachis hypogaea HOM05D003836 ORTHO05D004556 4.5e-22 110.5 92 62.0
arahy.Tifrunner.gnm1.ann1.QY8RSF Arachis hypogaea HOM05D003836 ORTHO05D004556 4.5e-22 110.5 92 62.0
arahy.Tifrunner.gnm1.ann1.1LH17Q Arachis hypogaea HOM05D003836 ORTHO05D004556 3.8e-21 107.5 83 66.3
arahy.Tifrunner.gnm1.ann1.XXVP91 Arachis hypogaea HOM05D003836 ORTHO05D004556 8.5e-21 106.3 85 63.5
TPR.G24606 Trifolium pratense HOM05D003836 ORTHO05D004556 8.5e-21 106.3 69 69.6
Oeu043972.2 Olea europaea HOM05D003836 ORTHO05D004556 1.6e-19 102.1 176 40.9
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 7.9e-19 99.8 110 56.4
SHI04354 Sapria himalayana HOM05D003836 ORTHO05D004556 9.1e-15 86.3 66 63.6
Gorai.010G152700 Gossypium raimondii HOM05D003836 ORTHO05D004556 1.2e-14 85.9 54 79.6
SMO278G0031 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 3.4e-14 84.3 147 38.8
Nn6g35438 Nelumbo nucifera HOM05D003836 ORTHO05D004556 5.9e-14 83.6 54 83.3
SEGI_35804 Sequoiadendron giganteum HOM05D003836 ORTHO05D004556 1.7e-13 82.0 168 33.3
Ca_18505_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 1.2e-11 75.9 49 65.3
arahy.Tifrunner.gnm1.ann1.UYUS3H Arachis hypogaea HOM05D003836 ORTHO05D019773 3.9e-10 70.9 52 71.2
SMO200G0209 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 3.9e-10 70.9 81 45.7
arahy.Tifrunner.gnm1.ann1.45U5GW Arachis hypogaea HOM05D003836 ORTHO05D011406 1.5e-09 68.9 52 69.2
Zm00001eb237940 Zea mays HOM05D003836 ORTHO05D004556 3.3e-09 67.8 46 56.5
Zm00001eb410650 Zea mays HOM05D003836 ORTHO05D004556 3.3e-09 67.8 46 56.5
arahy.Tifrunner.gnm1.ann1.X5KGN6 Arachis hypogaea HOM05D003836 ORTHO05D004556 9.7e-09 66.2 234 32.5
Zm00001eb175210 Zea mays HOM05D003836 ORTHO05D004556 9.7e-09 66.2 46 54.3
RcHm_v2.0_Chr4g0390701 Rosa chinensis HOM05D003836 ORTHO05D004556 1.7e-08 65.5 39 74.4
RcHm_v2.0_Chr6g0287871 Rosa chinensis HOM05D003836 ORTHO05D004556 1.8e-07 62.0 40 77.5
arahy.Tifrunner.gnm1.ann1.70DEUR Arachis hypogaea HOM05D000602 ORTHO05D004556 2.4e-07 61.6 39 71.8
arahy.Tifrunner.gnm1.ann1.JZ224H Arachis hypogaea HOM05D022818 ORTHO05D000304 1.5e-06 58.9 52 61.5
Os03g0715332 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 5.9e-06 57.0 53 50.9


User provided reference genes

Program Settings