Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G067600 Manihot esculenta HOM05D004468 ORTHO05D008180 2.1e-116 422.5 239 100.0
Manes.15G119000 Manihot esculenta HOM05D004468 ORTHO05D008180 7.5e-90 334.3 241 74.3
Potri.011G080000 Populus trichocarpa HOM05D004468 ORTHO05D008180 2.6e-74 282.7 241 64.3
QL05p059278 Quercus lobata HOM05D004468 ORTHO05D008180 5.0e-70 268.5 241 61.0
Dinv05249 Davidia involucrata HOM05D004468 ORTHO05D008180 3.3e-69 265.8 244 63.1
Haze_05549 Corylus avellana HOM05D004468 ORTHO05D008180 6.2e-68 261.5 243 65.0
Thecc.06G154000 Theobroma cacao HOM05D004468 ORTHO05D008180 1.4e-67 260.4 241 58.9
Dinv33636 Davidia involucrata HOM05D004468 ORTHO05D008180 6.8e-67 258.1 244 62.7
CiPaw.09G126600 Carya illinoinensis HOM05D004468 ORTHO05D008180 2.0e-66 256.5 236 58.5
Dinv30712 Davidia involucrata HOM05D004468 ORTHO05D008180 2.6e-66 256.1 240 65.4
COL.COLO4_06070 Corchorus olitorius HOM05D004468 ORTHO05D008180 3.4e-66 255.8 241 59.3
Prupe.4G077100 Prunus persica HOM05D004468 ORTHO05D008180 1.7e-65 253.4 243 58.8
Ciclev10016464m.g Citrus clementina HOM05D004468 ORTHO05D008180 5.4e-64 248.4 242 55.0
Duzib160G0871 Durio zibethinus HOM05D004468 ORTHO05D008180 5.4e-64 248.4 241 61.0
Cfa000973 Carpinus fangiana HOM05D004468 ORTHO05D008180 7.0e-64 248.1 242 61.2
Gohir.A10G039100 Gossypium hirsutum HOM05D004468 ORTHO05D008180 7.8e-63 244.6 240 56.7
MD05G1288800 Malus domestica HOM05D004468 ORTHO05D008180 7.8e-63 244.6 244 57.8
Gorai.011G042000 Gossypium raimondii HOM05D004468 ORTHO05D008180 1.0e-62 244.2 240 56.2
Sabra11G0068700 Salix brachista HOM05D004468 ORTHO05D008180 1.7e-62 243.4 241 58.1
Sabra11G0070800 Salix brachista HOM05D004468 ORTHO05D008180 1.7e-62 243.4 241 58.1
Gohir.D05G152600 Gossypium hirsutum HOM05D004468 ORTHO05D008180 3.9e-62 242.3 240 59.6
Gorai.009G156700 Gossypium raimondii HOM05D004468 ORTHO05D008180 6.6e-62 241.5 240 58.8
Duzib192G0660 Durio zibethinus HOM05D004468 ORTHO05D008180 1.1e-61 240.7 241 58.1
MD10G1264900 Malus domestica HOM05D004468 ORTHO05D008180 1.9e-61 240.0 244 56.1
Gohir.A05G150000 Gossypium hirsutum HOM05D004468 ORTHO05D008180 4.3e-61 238.8 241 58.5
Duzib235G1094 Durio zibethinus HOM05D004468 ORTHO05D008180 7.3e-61 238.0 239 57.7
Atru.chr10.1342 Acer truncatum HOM05D004468 ORTHO05D008180 9.5e-61 237.7 246 62.2
TWI53G1884 Tripterygium wilfordii HOM05D004468 ORTHO05D008180 3.1e-59 232.6 241 54.8
TAR629G0415 Trochodendron aralioides HOM05D004468 ORTHO05D008180 2.9e-57 226.1 242 57.9
CiPaw.10G093500 Carya illinoinensis HOM05D004468 ORTHO05D008180 2.1e-55 219.9 236 55.9
FvH4_3g06000 Fragaria vesca HOM05D004468 ORTHO05D008180 5.1e-54 215.3 245 57.1
FAN25G3280 Fragaria x ananassa HOM05D004468 ORTHO05D008180 5.6e-53 211.8 243 57.6
MD05G1288000 Malus domestica HOM05D004468 ORTHO05D008180 5.6e-53 211.8 217 54.8
FAN11G2204 Fragaria x ananassa HOM05D004468 ORTHO05D008180 1.6e-52 210.3 243 56.8
FAN21G2255 Fragaria x ananassa HOM05D004468 ORTHO05D008180 3.6e-52 209.1 243 56.0
RcHm_v2.0_Chr5g0013411 Rosa chinensis HOM05D004468 ORTHO05D008180 3.6e-52 209.1 247 56.3
MD05G1288300 Malus domestica HOM05D004468 ORTHO05D008180 6.2e-52 208.4 217 54.4
FAN16G0098 Fragaria x ananassa HOM05D004468 ORTHO05D008180 1.4e-51 207.2 243 54.7
Hma1.2p1_0164F.1_g073090 Hydrangea macrophylla HOM05D004468 ORTHO05D008180 3.1e-51 206.1 246 52.8
vmacro10945 Vaccinium macrocarpon HOM05D004468 ORTHO05D008180 1.5e-50 203.8 240 52.5
CsaV3_6G051560 Cucumis sativus L. HOM05D004468 ORTHO05D008180 4.9e-49 198.7 247 48.6
Nitab4.5_0001040g0150 Nicotiana tabacum HOM05D004468 ORTHO05D008180 9.2e-48 194.5 240 50.0
Sopen02g019960 Solanum pennellii HOM05D004468 ORTHO05D008180 8.7e-46 188.0 243 46.9
Solyc02g070880.1 Solanum lycopersicum HOM05D004468 ORTHO05D008180 2.5e-45 186.4 243 47.3
PGSC0003DMG400008295 Solanum tuberosum HOM05D004468 ORTHO05D008180 5.6e-45 185.3 241 47.7
Cc09_g09510 Coffea canephora HOM05D004468 ORTHO05D008180 7.3e-45 184.9 244 48.8
Peaxi162Scf00291g00015 Petunia axillaris HOM05D004468 ORTHO05D008180 1.2e-44 184.1 221 50.2
Aqoxy1G01779 Aquilegia oxysepala HOM05D004468 ORTHO05D008180 1.6e-44 183.7 244 44.7
TPR.G4895 Trifolium pratense HOM05D004468 ORTHO05D008180 8.1e-44 181.4 242 44.6
Sed0007839 Sechium edule HOM05D004468 ORTHO05D008180 1.4e-43 180.6 223 46.2
RhsimUnG0149400 Rhododendron simsii HOM05D004468 ORTHO05D008180 3.1e-43 179.5 245 49.8
CAN.G257.6 Capsicum annuum HOM05D004468 ORTHO05D008180 9.0e-43 177.9 220 48.2
CANSAT35G0919 Cannabis sativa HOM05D004468 ORTHO05D008180 7.6e-42 174.9 246 55.7
Sc17g0005060 Simmondsia chinensis HOM05D004468 ORTHO05D008180 9.9e-42 174.5 239 46.0
Gohir.D10G039900 Gossypium hirsutum HOM05D004468 ORTHO05D008180 1.3e-41 174.1 240 47.5
Ca_18271_v3 Cicer arietinum L. HOM05D004468 ORTHO05D008180 1.7e-41 173.7 240 44.6
Glyma.05G129400 Glycine max HOM05D004468 ORTHO05D008180 2.9e-41 172.9 236 44.1
Nn4g26508 Nelumbo nucifera HOM05D004468 ORTHO05D008180 1.9e-40 170.2 219 48.4
Sed0014650 Sechium edule HOM05D004468 ORTHO05D008180 4.2e-40 169.1 238 45.0
Lalb_Chr13g0291991 Lupinus albus HOM05D004468 ORTHO05D008180 5.4e-40 168.7 237 43.9
Sp1g25810 Schrenkiella parvula HOM05D004468 ORTHO05D008180 7.8e-39 164.9 239 49.4
THA.LOC104820641 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 3.0e-38 162.9 231 45.5
Phvul.002G194400 Phaseolus vulgaris HOM05D004468 ORTHO05D008180 6.6e-38 161.8 240 41.2
Psat7g090880 Pisum sativum HOM05D004468 ORTHO05D008180 6.6e-38 161.8 240 41.2
THA.LOC104812665 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 1.9e-37 160.2 241 46.5
Medtr4g096660 Medicago truncatula HOM05D004468 ORTHO05D008180 7.3e-37 158.3 204 45.1
MSTRG.14764 Avicennia marina HOM05D004468 ORTHO05D008180 1.3e-36 157.5 243 40.7
SalBow6G4733 Salvia bowleyana HOM05D004468 ORTHO05D008180 3.6e-36 156.0 192 46.4
SalBow7G0317 Salvia bowleyana HOM05D004468 ORTHO05D008180 3.6e-36 156.0 192 46.4
Hund21515 Selenicereus undatus HOM05D004468 ORTHO05D008180 4.8e-36 155.6 197 48.2
Thhalv10009888m.g Eutrema salsugineum HOM05D004468 ORTHO05D008180 1.1e-35 154.5 241 44.8
Glyma.08G084100 Glycine max HOM05D004468 ORTHO05D008180 1.8e-35 153.7 223 42.6
MSTRG.13248 Avicennia marina HOM05D004468 ORTHO05D008180 2.4e-35 153.3 244 43.0
arahy.Tifrunner.gnm1.ann1.2E3FWC Arachis hypogaea HOM05D004468 ORTHO05D008180 1.2e-34 151.0 223 42.2
Oeu052384.1 Olea europaea HOM05D004468 ORTHO05D008180 1.2e-34 151.0 238 42.9
Dinv32278 Davidia involucrata HOM05D004468 ORTHO05D011136 1.5e-34 150.6 128 60.9
BcaB03g13850 Brassica carinata HOM05D004468 ORTHO05D008180 5.8e-34 148.7 239 43.1
Migut.H01376 Erythranthe guttata HOM05D004468 ORTHO05D008180 1.3e-33 147.5 235 40.9
Lj4g0016525 Lotus japonicus HOM05D004468 ORTHO05D008180 1.3e-33 147.5 238 39.9
VMungo0251G1661 Vigna mungo HOM05D004468 ORTHO05D008180 1.7e-33 147.1 215 41.9
PSO541G2725 Papaver somniferum HOM05D004468 ORTHO05D008180 2.2e-33 146.7 245 40.8
AL1G43790 Arabidopsis lyrata HOM05D004468 ORTHO05D008180 4.9e-33 145.6 244 39.3
Lj1P1184T76 Lonicera japonica HOM05D004468 ORTHO05D008180 1.9e-32 143.7 214 51.9
Actinidia39559 Actinidia chinensis HOM05D004468 ORTHO05D008180 3.2e-32 142.9 241 47.7
PSO675G1482 Papaver somniferum HOM05D004468 ORTHO05D008180 4.2e-32 142.5 242 40.9
C07p15630 Brassica napus HOM05D004468 ORTHO05D008180 5.4e-32 142.1 247 45.3
Actinidia07680 Actinidia chinensis HOM05D004468 ORTHO05D011136 3.5e-31 139.4 216 50.9
Nitab4.5_0001655g0240 Nicotiana tabacum HOM05D004468 ORTHO05D008180 8.7e-30 134.8 240 42.5
MELO3C007151.2 Cucumis melo HOM05D004468 ORTHO05D008180 1.5e-29 134.0 247 47.0
THA.LOC104814285 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 1.9e-29 133.7 242 48.8
CARHR029490 Cardamine hirsuta HOM05D004468 ORTHO05D008180 1.3e-28 131.0 246 47.6
BcaC06g35475 Brassica carinata HOM05D004468 ORTHO05D008180 2.1e-28 130.2 242 43.4
BolC7t42051H Brassica oleracea HOM05D004468 ORTHO05D008180 2.1e-28 130.2 242 43.4
Os01g0626900 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 2.1e-28 130.2 217 38.7
AT1G29950 Arabidopsis thaliana HOM05D004468 ORTHO05D008180 2.4e-27 126.7 247 43.3
Carub.0001s2818 Capsella rubella HOM05D004468 ORTHO05D008180 4.5e-26 122.5 271 34.7
Os02g0315600 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 5.8e-26 122.1 214 39.7
RhsimUnG0174800 Rhododendron simsii HOM05D004468 ORTHO05D008180 7.6e-26 121.7 225 42.7
CDE02G0697 Ceratophyllum demersum HOM05D004468 ORTHO05D008180 1.7e-25 120.6 243 33.3
A08p24790 Brassica napus HOM05D004468 ORTHO05D008180 2.2e-25 120.2 263 33.8
BraA08t34433Z Brassica rapa HOM05D004468 ORTHO05D008180 2.2e-25 120.2 263 33.8
Lsat_1_v5_gn_1_96101 Lactuca sativa HOM05D004468 ORTHO05D008180 3.8e-25 119.4 197 48.7
A07p10110 Brassica napus HOM05D004468 ORTHO05D008180 1.1e-24 117.9 235 44.3
C03p76270 Brassica napus HOM05D004468 ORTHO05D008180 1.1e-24 117.9 248 34.7
BolC3t19884H Brassica oleracea HOM05D004468 ORTHO05D008180 1.1e-24 117.9 248 34.7
BcaC01g00145 Brassica carinata HOM05D004468 ORTHO05D008180 1.4e-24 117.5 264 34.1
Os03g0591300 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 2.7e-23 113.2 201 38.8
Eucgr.D00317 Eucalyptus grandis HOM05D004468 ORTHO05D008180 4.6e-23 112.5 233 44.6
BcaB03g12186 Brassica carinata HOM05D004468 ORTHO05D008180 3.9e-22 109.4 245 33.5
Zm00001eb384990 Zea mays HOM05D004468 ORTHO05D008180 5.1e-22 109.0 201 38.3
Nn3g20652 Nelumbo nucifera HOM05D004468 ORTHO05D008180 8.7e-22 108.2 170 44.1
unitig_8.g4884 Utricularia gibba HOM05D004468 ORTHO05D008180 4.3e-21 105.9 203 36.9
Lsat_1_v5_gn_7_32861 Lactuca sativa HOM05D004468 ORTHO05D008180 5.6e-21 105.5 192 49.5
Oeu040960.2 Olea europaea HOM05D004468 ORTHO05D008180 1.6e-20 104.0 202 37.1
QL05p059480 Quercus lobata HOM05D004468 ORTHO05D008180 1.1e-19 101.3 127 48.0
BraA07t28804Z Brassica rapa HOM05D004468 ORTHO05D008180 1.2e-18 97.8 240 35.8
HanXRQChr04g0118301 Helianthus annuus HOM05D004468 ORTHO05D008180 4.9e-17 92.4 192 43.2
MD05G1288500 Malus domestica HOM05D004468 ORTHO05D008180 9.3e-16 88.2 88 62.5
ECA236G0629 Erigeron canadensis HOM05D004468 ORTHO05D011136 1.3e-14 84.3 170 49.4
Zm00001eb278170 Zea mays HOM05D004468 ORTHO05D008180 1.1e-13 81.3 198 42.9
Zm00001eb277350 Zea mays HOM05D004468 ORTHO05D008180 1.3e-12 77.8 202 40.1
C07p15610 Brassica napus HOM05D004468 ORTHO05D008180 4.1e-11 72.8 136 36.8
BolC7t42047H Brassica oleracea HOM05D004468 ORTHO05D008180 1.5e-10 70.9 97 39.2
BcaC06g35479 Brassica carinata HOM05D000171 ORTHO05D008180 5.9e-10 68.9 85 41.2
Thecc.08G067700 Theobroma cacao HOM05D001755 ORTHO05D001665 6.1e-07 58.9 54 46.3
HanXRQChr12g0382221 Helianthus annuus HOM05D004468 ORTHO05D008180 1.0e-06 58.2 112 39.3
CDE08G0998 Ceratophyllum demersum HOM05D004468 ORTHO05D011136 1.4e-06 57.8 136 40.4


User provided reference genes

Program Settings