Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G066000 Manihot esculenta HOM05D005404 ORTHO05D006623 4.4e-52 208.0 129 100.0
Manes.15G118100 Manihot esculenta HOM05D005404 ORTHO05D006623 8.0e-46 187.2 129 90.7
Potri.001G352600 Populus trichocarpa HOM05D005404 ORTHO05D006623 1.4e-45 186.4 129 83.7
arahy.Tifrunner.gnm1.ann1.HITJ74 Arachis hypogaea HOM05D005404 ORTHO05D006623 5.2e-45 184.5 129 82.2
Hund21493 Selenicereus undatus HOM05D005404 ORTHO05D006623 1.2e-44 183.3 129 82.2
Duzib101G0001 Durio zibethinus HOM05D005404 ORTHO05D006623 1.5e-44 183.0 129 82.2
Duzib192G1075 Durio zibethinus HOM05D005404 ORTHO05D006623 1.5e-44 183.0 129 82.2
Lalb_Chr12g0208831 Lupinus albus HOM05D005404 ORTHO05D006623 1.5e-44 183.0 129 85.3
Phvul.002G197500 Phaseolus vulgaris HOM05D005404 ORTHO05D006623 3.3e-44 181.8 129 81.4
TWI53G0717 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 4.4e-44 181.4 131 82.4
VMungo0251G2631 Vigna mungo HOM05D005404 ORTHO05D006623 5.7e-44 181.0 129 81.4
Eucgr.E02375 Eucalyptus grandis HOM05D005404 ORTHO05D006623 7.5e-44 180.6 129 80.6
TAR626G1892 Trochodendron aralioides HOM05D005404 ORTHO05D006623 7.5e-44 180.6 128 79.7
Sed0003587 Sechium edule HOM05D005404 ORTHO05D006623 9.7e-44 180.3 129 81.4
Atru.chr10.1368 Acer truncatum HOM05D005404 ORTHO05D006623 1.3e-43 179.9 129 86.8
CANSAT35G0205 Cannabis sativa HOM05D005404 ORTHO05D006623 1.3e-43 179.9 129 79.1
PGR042G3093 Punica granatum HOM05D005404 ORTHO05D006623 1.7e-43 179.5 129 80.6
CiPaw.09G128300 Carya illinoinensis HOM05D005404 ORTHO05D006623 2.2e-43 179.1 128 83.6
Glyma.05G127400 Glycine max HOM05D005404 ORTHO05D006623 2.2e-43 179.1 130 82.3
Gohir.A10G038300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 2.2e-43 179.1 129 79.8
Nn3g20867 Nelumbo nucifera HOM05D005404 ORTHO05D006623 2.2e-43 179.1 130 87.7
MELO3C007159.2 Cucumis melo HOM05D005404 ORTHO05D006623 2.8e-43 178.7 129 80.6
CsaV3_6G051470 Cucumis sativus L. HOM05D005404 ORTHO05D006623 2.8e-43 178.7 129 80.6
Ciclev10017167m.g Citrus clementina HOM05D005404 ORTHO05D006623 3.7e-43 178.3 130 80.8
Duzib235G1537 Durio zibethinus HOM05D005404 ORTHO05D006623 3.7e-43 178.3 129 79.8
MD16G1202800 Malus domestica HOM05D005404 ORTHO05D006623 3.7e-43 178.3 133 80.5
Glyma.08G082100 Glycine max HOM05D005404 ORTHO05D006623 4.8e-43 177.9 130 81.5
Gohir.D10G039300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 6.3e-43 177.6 129 79.1
Gorai.011G041300 Gossypium raimondii HOM05D005404 ORTHO05D006623 6.3e-43 177.6 129 79.1
PSO017G4964 Papaver somniferum HOM05D005404 ORTHO05D006623 6.3e-43 177.6 127 80.3
Duzib160G0646 Durio zibethinus HOM05D005404 ORTHO05D006623 8.2e-43 177.2 129 78.3
FAN21G0592 Fragaria x ananassa HOM05D005404 ORTHO05D006623 8.2e-43 177.2 132 80.3
Thecc.06G156200 Theobroma cacao HOM05D005404 ORTHO05D006623 1.1e-42 176.8 129 78.3
Sc05g0006520 Simmondsia chinensis HOM05D005404 ORTHO05D006623 1.4e-42 176.4 129 80.6
Actinidia39556 Actinidia chinensis HOM05D005404 ORTHO05D006623 1.8e-42 176.0 129 85.3
MD05G1290500 Malus domestica HOM05D005404 ORTHO05D006623 1.8e-42 176.0 133 78.9
Aqoxy4G00127 Aquilegia oxysepala HOM05D005404 ORTHO05D006623 2.4e-42 175.6 129 79.8
Ca_18287_v3 Cicer arietinum L. HOM05D005404 ORTHO05D006623 4.1e-42 174.9 129 78.3
EL10Ac8g19776 Beta vulgaris HOM05D005404 ORTHO05D006623 5.3e-42 174.5 129 78.3
DCAR_007905 Daucus carota HOM05D005404 ORTHO05D006623 5.3e-42 174.5 129 79.1
Lj4g0012372 Lotus japonicus HOM05D005404 ORTHO05D006623 5.3e-42 174.5 129 77.5
PSO170G1289 Papaver somniferum HOM05D005404 ORTHO05D006623 5.3e-42 174.5 127 78.7
Prupe.4G075200 Prunus persica HOM05D005404 ORTHO05D006623 1.2e-41 173.3 133 77.4
HanXRQChr11g0340931 Helianthus annuus HOM05D005404 ORTHO05D006623 3.5e-41 171.8 129 77.5
Nn4g26481 Nelumbo nucifera HOM05D005404 ORTHO05D006623 4.5e-41 171.4 150 70.0
QL05p060078 Quercus lobata HOM05D005404 ORTHO05D006623 1.3e-40 169.9 128 83.6
Nitab4.5_0000206g0130 Nicotiana tabacum HOM05D005404 ORTHO05D006623 1.7e-40 169.5 129 74.4
Medtr4g094580 Medicago truncatula HOM05D005404 ORTHO05D006623 3.8e-40 168.3 130 76.9
Sabra16G0231900 Salix brachista HOM05D005404 ORTHO05D006623 3.8e-40 168.3 161 65.8
Carub.0001s2809 Capsella rubella HOM05D005404 ORTHO05D006623 5.0e-40 167.9 129 76.7
SGA_v2.0_scaffold333G49013 Striga asiatica HOM05D005404 ORTHO05D006623 6.5e-40 167.5 126 76.2
THA.LOC104812663 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 1.1e-39 166.8 129 76.7
Solyc02g071150.3 Solanum lycopersicum HOM05D005404 ORTHO05D006623 1.9e-39 166.0 129 72.9
Sopen02g020230 Solanum pennellii HOM05D005404 ORTHO05D006623 1.9e-39 166.0 129 72.9
BcaB03g12183 Brassica carinata HOM05D005404 ORTHO05D006623 4.2e-39 164.9 133 75.2
Sp1g25740 Schrenkiella parvula HOM05D005404 ORTHO05D006623 4.2e-39 164.9 132 75.8
CDE02G1967 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 5.5e-39 164.5 129 80.6
Os05g0547850 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 7.2e-39 164.1 129 73.6
MSTRG.16208 Avicennia marina HOM05D005404 ORTHO05D006623 9.4e-39 163.7 127 73.2
BcaB03g13855 Brassica carinata HOM05D005404 ORTHO05D006623 1.2e-38 163.3 132 75.0
BolC5t31581H Brassica oleracea HOM05D005404 ORTHO05D006623 1.2e-38 163.3 129 73.6
Lsat_1_v5_gn_1_91580 Lactuca sativa HOM05D005404 ORTHO05D006623 1.2e-38 163.3 130 80.0
BcaC01g00143 Brassica carinata HOM05D005404 ORTHO05D006623 1.6e-38 162.9 132 75.0
BcaC05g26997 Brassica carinata HOM05D005404 ORTHO05D006623 1.6e-38 162.9 129 73.6
C05p28570 Brassica napus HOM05D005404 ORTHO05D006623 1.6e-38 162.9 129 73.6
SalBow7G3345 Salvia bowleyana HOM05D005404 ORTHO05D006623 1.6e-38 162.9 126 79.4
TAR627G1065 Trochodendron aralioides HOM05D005404 ORTHO05D006623 1.6e-38 162.9 117 79.5
unitig_26.g10094 Utricularia gibba HOM05D005404 ORTHO05D006623 1.6e-38 162.9 127 73.2
GSVIVG01021395001 Vitis vinifera HOM05D005404 ORTHO05D006623 1.6e-38 162.9 116 81.0
BcaB07g32570 Brassica carinata HOM05D005404 ORTHO05D006623 2.1e-38 162.5 129 73.6
Peaxi162Scf00482g00049 Petunia axillaris HOM05D005404 ORTHO05D006623 2.1e-38 162.5 129 72.1
ECA248G0679 Erigeron canadensis HOM05D005404 ORTHO05D006623 3.6e-38 161.8 129 79.1
BcaC06g35468 Brassica carinata HOM05D005404 ORTHO05D006623 6.1e-38 161.0 132 73.5
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 6.1e-38 161.0 131 74.8
Thhalv10009098m.g Eutrema salsugineum HOM05D005404 ORTHO05D006623 6.1e-38 161.0 132 74.2
Migut.H01386 Erythranthe guttata HOM05D005404 ORTHO05D006623 8.0e-38 160.6 128 75.0
CARHR029600 Cardamine hirsuta HOM05D005404 ORTHO05D006623 1.0e-37 160.2 132 73.5
Dinv32291 Davidia involucrata HOM05D005404 ORTHO05D006623 1.0e-37 160.2 116 86.2
MBI07_g07833_MAGBIO Magnolia biondii HOM05D005404 ORTHO05D006623 1.4e-37 159.8 116 79.3
Oeu012458.1 Olea europaea HOM05D005404 ORTHO05D006623 1.4e-37 159.8 126 80.2
COL.COLO4_07492 Corchorus olitorius HOM05D005404 ORTHO05D006623 2.3e-37 159.1 116 79.3
Rhsim02G0154900 Rhododendron simsii HOM05D005404 ORTHO05D006623 3.0e-37 158.7 116 79.3
FAN25G0636 Fragaria x ananassa HOM05D005404 ORTHO05D006623 4.0e-37 158.3 131 80.2
FAN25G2540 Fragaria x ananassa HOM05D005404 ORTHO05D006623 4.0e-37 158.3 131 80.2
Cc00_g15980 Coffea canephora HOM05D005404 ORTHO05D006623 6.8e-37 157.5 116 79.3
RcHm_v2.0_Chr5g0013081 Rosa chinensis HOM05D005404 ORTHO05D006623 6.8e-37 157.5 132 78.8
ATR0681G149 Amborella trichopoda HOM05D005404 ORTHO05D006623 1.2e-36 156.8 114 78.9
FAN11G2394 Fragaria x ananassa HOM05D005404 ORTHO05D006623 3.4e-36 155.2 119 79.0
THA.LOC104814282 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 4.4e-36 154.8 130 80.0
DCAR_003948 Daucus carota HOM05D005404 ORTHO05D006623 5.7e-36 154.5 117 78.6
FAN16G2304 Fragaria x ananassa HOM05D005404 ORTHO05D006623 5.7e-36 154.5 132 79.5
BolC3t19881H Brassica oleracea HOM05D005404 ORTHO05D006623 9.8e-36 153.7 121 74.4
Haze_05531 Corylus avellana HOM05D005404 ORTHO05D006623 1.3e-35 153.3 116 78.4
TWI09G1218 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 2.2e-35 152.5 112 83.9
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 2.8e-35 152.1 120 74.2
BraA07t28813Z Brassica rapa HOM05D005404 ORTHO05D006623 3.7e-35 151.8 122 73.0
A07p10200 Brassica napus HOM05D005404 ORTHO05D006623 4.8e-35 151.4 121 72.7
AL1G43680 Arabidopsis lyrata HOM05D005404 ORTHO05D006623 6.3e-35 151.0 133 72.2
Psat7g091480 Pisum sativum HOM05D005404 ORTHO05D006623 6.3e-35 151.0 116 75.9
Lj2A310T44 Lonicera japonica HOM05D005404 ORTHO05D006623 1.1e-34 150.2 116 84.5
BolC7t42063H Brassica oleracea HOM05D005404 ORTHO05D006623 1.4e-34 149.8 122 71.3
AUR62027578 Chenopodium quinoa HOM05D005404 ORTHO05D006623 2.4e-34 149.1 132 76.5
AT1G29850 Arabidopsis thaliana HOM05D005404 ORTHO05D006623 1.6e-33 146.4 132 75.8
Zm00001eb294640 Zea mays HOM05D005404 ORTHO05D006623 2.7e-33 145.6 129 70.5
CAN.G257.34 Capsicum annuum HOM05D005404 ORTHO05D006623 7.7e-33 144.1 128 72.7
CDE08G1548 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 1.0e-32 143.7 112 75.0
AUR62035781 Chenopodium quinoa HOM05D005404 ORTHO05D006623 1.3e-32 143.3 132 75.8
PGSC0003DMG400003081 Solanum tuberosum HOM05D005404 ORTHO05D006623 1.1e-31 140.2 129 72.1
Hma1.2p1_0015F.1_g010240 Hydrangea macrophylla HOM05D005404 ORTHO05D006623 1.5e-31 139.8 152 59.9
FvH4_3g06230 Fragaria vesca HOM05D005404 ORTHO05D006623 1.9e-31 139.4 119 79.8
Oeu046548.1 Olea europaea HOM05D005404 ORTHO05D006623 4.7e-30 134.8 114 76.3
Nitab4.5_0008782g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 1.0e-29 133.7 128 68.8
Zm00001eb342640 Zea mays HOM05D005404 ORTHO05D006623 2.0e-28 129.4 131 68.7
MD09G1183100 Malus domestica HOM05D005404 ORTHO05D006623 9.8e-28 127.1 82 87.8
MSTRG.14760 Avicennia marina HOM05D005404 ORTHO05D006623 1.3e-27 126.7 110 69.1
Oeu052389.2 Olea europaea HOM05D005404 ORTHO05D006623 1.4e-26 123.2 142 57.7
AUR62023445 Chenopodium quinoa HOM05D005404 ORTHO05D006623 1.2e-25 120.2 86 76.7
Pp3c14_19320 Physcomitrium patens HOM05D005404 ORTHO05D006623 1.6e-25 119.8 134 63.4
AagrBONN_evm.TU.Sc2ySwM_362.2923 Anthoceros agrestis HOM05D005404 ORTHO05D006623 3.5e-25 118.6 80 80.0
SMO358G0232 Selaginella moellendorffii HOM05D005404 ORTHO05D006623 3.5e-25 118.6 125 65.6
Peaxi162Scf00121g02445 Petunia axillaris HOM05D005404 ORTHO05D006623 2.9e-24 115.5 128 59.4
arahy.Tifrunner.gnm1.ann1.JSLQ1D Arachis hypogaea HOM05D005404 ORTHO05D006623 5.6e-23 111.3 68 89.7
Aa31LG6G5780 Aethionema arabicum HOM05D005404 ORTHO05D006623 7.3e-23 110.9 95 69.5
Cpa.g.sc17.100 Carica papaya HOM05D005404 ORTHO05D006623 1.2e-22 110.2 66 92.4
Mapoly0080s0013 Marchantia polymorpha HOM05D005404 ORTHO05D006623 1.2e-22 110.2 136 61.8
TAR636G3446 Trochodendron aralioides HOM05D005404 ORTHO05D006623 3.4e-20 102.1 83 72.3
Os05g0546500 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 5.7e-20 101.3 70 81.4
SEGI_04398 Sequoiadendron giganteum HOM05D005404 ORTHO05D006623 2.2e-19 99.4 68 82.4
C07p15720 Brassica napus HOM05D005404 ORTHO05D006623 2.9e-19 99.0 86 68.6
ClCG01G024320 Citrullus lanatus HOM05D005404 ORTHO05D006623 4.9e-19 98.2 129 52.7
CBR_g45965 Chara braunii HOM05D005404 ORTHO05D006623 1.4e-18 96.7 83 62.7
HPP92_021557 Vanilla planifolia HOM05D005404 ORTHO05D006623 2.5e-15 85.9 54 88.9
Nitab4.5_0003527g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 4.3e-15 85.1 58 81.0
Cre12.g557800 Chlamydomonas reinhardtii HOM05D005404 ORTHO05D006623 9.5e-15 84.0 126 47.6
PRCOL_00005423 Prasinoderma coloniale HOM05D005404 ORTHO05D006623 1.2e-14 83.6 87 54.0
C03p76250 Brassica napus HOM05D005404 ORTHO05D006623 4.7e-14 81.6 54 81.5
Nitab4.5_0010964g0060 Nicotiana tabacum HOM05D000728 ORTHO05D001474 2.3e-13 79.3 270 32.2
arahy.Tifrunner.gnm1.ann1.HCY9BB Arachis hypogaea HOM05D005404 ORTHO05D006623 3.4e-12 75.5 60 71.7
CSS0048314 Camellia sinensis var. sinensis HOM05D005404 ORTHO05D006623 5.8e-12 74.7 75 68.0
Hund21505 Selenicereus undatus HOM05D005404 ORTHO05D006623 3.2e-10 68.9 110 44.5
HPP92_021556 Vanilla planifolia HOM05D000864 ORTHO05D001658 4.1e-10 68.6 61 63.9
A09p36640 Brassica napus HOM05D005404 ORTHO05D006623 7.8e-09 64.3 64 60.9
Nn4g23354 Nelumbo nucifera HOM05D005404 ORTHO05D006623 3.9e-08 62.0 40 85.0


User provided reference genes

Program Settings