Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 2.8e-238 828.2 408 100.0
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 1.1e-226 789.6 408 93.9
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 3.6e-225 784.6 408 92.9
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 4.7e-225 784.3 408 93.1
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 1.8e-224 782.3 408 93.4
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.8e-224 782.3 408 92.9
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 2.3e-224 781.9 408 92.9
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 3.0e-224 781.6 408 92.9
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.1e-223 779.6 408 92.6
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 3.3e-223 778.1 406 92.9
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 5.7e-223 777.3 406 91.9
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 1.8e-221 772.3 408 91.4
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 1.8e-221 772.3 406 92.4
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 2.4e-221 771.9 408 92.2
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 2.4e-221 771.9 408 91.2
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 3.1e-221 771.5 408 91.4
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 3.1e-221 771.5 407 90.9
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 7.0e-221 770.4 406 92.1
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 9.1e-221 770.0 408 91.4
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 1.2e-220 769.6 407 90.9
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 1.2e-220 769.6 409 91.9
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 1.6e-220 769.2 408 90.9
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 1.6e-220 769.2 406 91.1
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 1.6e-220 769.2 406 91.4
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 2.0e-220 768.8 408 90.9
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 2.6e-220 768.5 406 91.6
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 2.6e-220 768.5 408 90.7
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 2.6e-220 768.5 408 91.9
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 3.5e-220 768.1 406 90.9
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 3.5e-220 768.1 406 91.6
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 4.5e-220 767.7 408 90.9
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 4.5e-220 767.7 406 91.4
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 5.9e-220 767.3 408 90.7
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 5.9e-220 767.3 406 91.1
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 7.7e-220 766.9 408 90.4
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.0e-219 766.5 406 91.6
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 1.7e-219 765.8 406 91.4
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 1.7e-219 765.8 405 91.6
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 2.2e-219 765.4 408 90.2
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 2.2e-219 765.4 408 90.0
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 2.2e-219 765.4 408 89.7
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 2.2e-219 765.4 406 91.1
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 2.9e-219 765.0 406 91.4
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 6.5e-219 763.8 408 90.9
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 8.5e-219 763.5 406 91.1
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 8.5e-219 763.5 406 90.1
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 8.5e-219 763.5 408 90.0
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 1.1e-218 763.1 406 89.9
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 1.9e-218 762.3 409 91.4
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 3.2e-218 761.5 406 89.9
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 9.4e-218 760.0 406 90.4
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 9.4e-218 760.0 406 89.7
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 1.6e-217 759.2 406 89.7
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 1.6e-217 759.2 406 90.6
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 2.1e-217 758.8 406 89.9
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 2.1e-217 758.8 404 90.3
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 2.7e-217 758.4 406 89.4
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 3.6e-217 758.1 406 89.2
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 8.0e-217 756.9 406 90.1
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 8.0e-217 756.9 422 88.4
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 1.8e-216 755.7 408 89.0
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 2.3e-216 755.4 406 90.1
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 8.8e-216 753.4 409 89.0
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 8.8e-216 753.4 408 90.2
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 2.0e-215 752.3 406 88.9
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 2.6e-215 751.9 408 88.5
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 4.4e-215 751.1 406 88.9
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 5.7e-215 750.7 406 88.4
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 5.7e-215 750.7 408 89.0
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 2.2e-214 748.8 406 88.4
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 2.8e-214 748.4 398 91.0
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 2.8e-214 748.4 421 88.1
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 2.8e-214 748.4 406 88.9
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 4.8e-214 747.7 406 88.4
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 4.8e-214 747.7 407 89.2
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 4.8e-214 747.7 404 88.4
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 8.2e-214 746.9 406 88.4
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 1.1e-213 746.5 406 88.9
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 1.1e-213 746.5 406 88.4
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 1.4e-213 746.1 406 88.2
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.8e-213 745.7 449 82.9
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 3.1e-213 745.0 406 88.2
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 9.1e-213 743.4 408 88.5
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 1.6e-212 742.7 406 88.2
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 1.6e-212 742.7 406 88.2
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 1.6e-212 742.7 406 87.9
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 2.7e-212 741.9 450 82.0
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 3.5e-212 741.5 406 88.2
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 3.5e-212 741.5 406 87.7
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 4.5e-212 741.1 406 87.9
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 7.7e-212 740.3 406 88.2
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 2.2e-211 738.8 406 87.4
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 3.8e-211 738.0 406 86.2
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 3.8e-211 738.0 407 87.7
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 5.0e-211 737.6 407 87.7
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 5.0e-211 737.6 407 87.7
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 5.0e-211 737.6 473 79.1
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 6.5e-211 737.3 408 87.3
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 1.1e-210 736.5 409 86.6
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 1.5e-210 736.1 407 87.7
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 7.2e-210 733.8 385 92.2
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 1.2e-209 733.0 433 83.6
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 1.6e-209 732.6 407 85.5
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 2.1e-209 732.3 407 85.5
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 3.6e-209 731.5 406 86.2
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 3.6e-209 731.5 408 86.8
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.8e-208 729.2 407 86.0
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 3.0e-208 728.4 408 85.5
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 4.0e-208 728.0 408 85.5
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 2.8e-206 721.8 407 85.3
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 4.8e-206 721.1 382 91.1
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 6.6e-203 710.7 379 90.8
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 7.2e-202 707.2 449 77.3
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 1.6e-201 706.1 387 88.1
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 1.6e-201 706.1 517 70.4
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 3.7e-198 694.9 407 84.0
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 7.8e-196 687.2 417 81.8
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 1.3e-195 686.4 358 92.2
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 1.9e-194 682.6 410 80.5
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 2.5e-194 682.2 413 81.1
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 1.2e-193 679.9 356 91.0
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 2.4e-189 665.6 412 78.9
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 1.3e-187 659.8 408 77.2
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 1.7e-187 659.4 358 88.5
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 9.5e-186 653.7 408 79.4
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 4.0e-176 621.7 410 72.9
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 1.5e-175 619.8 412 72.1
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 5.4e-173 611.3 406 73.6
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 3.0e-171 605.5 405 70.6
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 4.9e-166 588.2 317 88.6
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 2.0e-159 566.2 389 74.3
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 7.6e-159 564.3 400 67.5
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 5.4e-157 558.1 406 70.4
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.1e-146 523.9 318 79.9
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.5e-143 513.5 310 82.6
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 4.6e-140 501.9 400 62.0
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 2.5e-130 469.5 245 92.2
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 1.2e-127 460.7 255 85.9
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 3.2e-125 452.6 368 61.7
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 1.5e-119 433.7 238 89.1
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 1.0e-118 431.0 413 53.8
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 2.7e-116 422.9 227 89.0
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 8.5e-110 401.4 236 81.4
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 3.5e-103 379.4 197 93.4
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 1.6e-79 300.8 404 42.8
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 2.3e-75 287.0 390 44.1
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 8.3e-73 278.5 183 76.0
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 1.1e-69 268.1 180 72.8
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 8.9e-59 231.9 141 78.0
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 1.5e-58 231.1 140 78.6
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 5.4e-56 222.6 124 84.7
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 2.9e-49 200.3 130 77.7
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 4.3e-21 106.7 128 47.7
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 8.2e-20 102.4 58 77.6
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 4.1e-11 73.6 335 23.9
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 5.0e-09 66.6 327 22.6


User provided reference genes

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