Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 2.5e-262 908.3 472 100.0
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 2.8e-205 718.8 476 78.4
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 9.9e-203 710.3 476 77.3
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 1.3e-202 709.9 471 77.7
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 1.4e-201 706.4 473 79.3
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 7.8e-200 700.7 473 78.9
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 5.1e-199 698.0 472 76.1
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 1.5e-198 696.4 473 77.2
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 3.3e-198 695.3 472 76.9
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 7.3e-198 694.1 472 75.8
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 9.0e-196 687.2 476 76.3
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 9.0e-196 687.2 476 76.3
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 1.2e-195 686.8 472 74.2
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 4.5e-195 684.9 490 73.1
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 1.3e-194 683.3 472 76.9
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 1.7e-194 682.9 472 75.6
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 2.2e-194 682.6 476 75.4
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 2.2e-194 682.6 473 76.7
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 2.9e-194 682.2 473 77.2
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 3.8e-194 681.8 473 75.7
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 1.1e-193 680.2 473 77.0
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 1.4e-193 679.9 473 76.7
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 1.9e-193 679.5 473 75.7
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 2.4e-193 679.1 472 73.1
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 4.2e-193 678.3 472 76.3
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 9.3e-193 677.2 478 72.4
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 9.3e-193 677.2 472 76.5
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 4.6e-192 674.9 475 75.2
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 6.0e-192 674.5 472 75.0
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 5.1e-191 671.4 499 73.5
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 1.9e-190 669.5 488 73.6
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.9e-190 669.5 472 72.7
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 1.9e-190 669.5 473 74.6
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 2.5e-190 669.1 488 73.6
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 3.3e-190 668.7 474 76.8
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 7.4e-190 667.5 486 73.9
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 6.2e-189 664.5 477 73.6
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 1.1e-188 663.7 493 73.0
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 2.4e-188 662.5 472 75.2
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 3.1e-188 662.1 491 72.5
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 4.0e-188 661.8 475 73.9
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 6.9e-188 661.0 481 74.4
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 2.0e-187 659.4 475 73.7
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 2.0e-187 659.4 514 70.8
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 4.5e-187 658.3 472 70.8
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.8e-187 657.9 463 72.6
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 1.7e-186 656.4 473 72.7
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.2e-186 656.0 472 70.8
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 3.2e-185 652.1 450 77.1
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 3.5e-184 648.7 475 72.6
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 7.9e-184 647.5 508 70.1
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 1.0e-183 647.1 473 73.8
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 1.3e-183 646.7 524 67.4
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 1.8e-183 646.4 474 72.2
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 2.3e-183 646.0 472 71.2
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 5.1e-183 644.8 472 71.8
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 6.7e-183 644.4 475 71.8
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.5e-182 643.3 472 72.7
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 5.6e-182 641.3 474 71.9
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 7.4e-182 641.0 474 72.8
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 9.6e-182 640.6 409 81.7
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 9.6e-182 640.6 472 72.2
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 1.3e-181 640.2 473 72.7
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 1.3e-181 640.2 471 72.8
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 1.6e-181 639.8 475 72.2
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.8e-181 638.3 465 69.9
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 4.8e-181 638.3 473 72.3
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 1.5e-179 633.3 475 71.4
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 1.5e-179 633.3 475 70.7
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 2.2e-178 629.4 529 66.7
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 2.9e-178 629.0 475 69.9
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 3.8e-178 628.6 475 70.1
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 3.8e-178 628.6 505 68.9
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 4.9e-178 628.2 472 70.6
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 4.9e-178 628.2 480 70.4
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 4.9e-178 628.2 472 70.6
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 6.5e-178 627.9 472 72.2
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 8.4e-178 627.5 473 70.8
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 3.2e-177 625.5 472 69.9
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 1.6e-176 623.2 474 69.6
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 1.6e-176 623.2 480 71.0
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 3.5e-176 622.1 480 71.0
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 4.6e-176 621.7 473 70.2
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 1.8e-175 619.8 433 76.7
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 3.0e-175 619.0 485 69.1
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 5.1e-175 618.2 470 70.0
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 1.1e-174 617.1 475 70.1
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 2.5e-174 615.9 474 69.8
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.5e-174 615.9 463 69.5
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 9.7e-174 614.0 471 71.5
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 1.6e-173 613.2 357 86.0
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 8.2e-173 610.9 472 68.9
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 2.4e-172 609.4 397 77.8
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 1.2e-171 607.1 472 68.4
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 3.4e-171 605.5 378 78.8
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 5.9e-171 604.7 478 69.2
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 5.9e-171 604.7 475 67.4
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 5.0e-170 601.7 468 68.2
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 1.2e-168 597.0 408 75.5
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.2e-168 597.0 474 69.2
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 2.1e-168 596.3 488 67.4
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 2.7e-168 595.9 475 68.2
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 3.0e-167 592.4 521 63.5
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 5.7e-166 588.2 486 67.3
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 3.7e-165 585.5 483 66.7
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 1.8e-164 583.2 474 67.3
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 3.1e-164 582.4 510 63.1
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 4.1e-164 582.0 489 66.3
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 9.1e-164 580.9 488 66.8
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 5.9e-163 578.2 474 66.7
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 1.7e-162 576.6 474 66.2
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 6.5e-162 574.7 404 75.5
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 3.2e-161 572.4 465 66.5
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 4.2e-161 572.0 455 67.9
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 2.1e-160 569.7 332 83.7
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 1.5e-158 563.5 463 66.3
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 3.3e-158 562.4 488 63.5
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 7.4e-158 561.2 492 62.4
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 1.4e-156 557.0 505 62.2
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 6.1e-152 541.6 437 67.0
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 3.9e-151 538.9 443 65.2
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.7e-149 533.5 473 63.6
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 8.2e-149 531.2 468 63.7
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 8.2e-149 531.2 466 60.5
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 9.1e-148 527.7 279 91.0
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 2.6e-147 526.2 274 93.1
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 2.4e-140 503.1 466 59.4
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 9.1e-140 501.1 505 56.0
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 1.6e-139 500.4 331 73.1
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.7e-138 496.9 450 60.4
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 8.0e-136 488.0 386 66.8
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 1.8e-135 486.9 334 73.1
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 9.8e-134 481.1 330 70.3
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 2.8e-133 479.6 572 54.0
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.6e-131 473.8 431 63.6
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.3e-125 454.1 356 66.6
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 8.3e-125 451.4 448 58.0
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 2.3e-122 443.4 473 56.2
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 3.8e-122 442.6 410 56.3
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 5.8e-118 428.7 441 56.5
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 1.7e-106 390.6 388 57.7
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 5.6e-105 385.6 287 69.0
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 1.3e-101 374.4 349 54.2
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 3.2e-100 369.8 339 56.0
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 1.6e-80 304.3 473 44.8
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 1.2e-75 288.1 260 56.2
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 5.8e-70 269.2 468 42.5
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 6.9e-55 219.2 374 38.0
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 5.9e-46 189.5 249 47.8
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.3e-40 171.8 421 34.9
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 1.5e-38 164.9 120 70.8
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.7e-32 143.7 198 46.5
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 2.6e-30 137.5 132 57.6
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 1.7e-29 134.8 81 79.0
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 5.9e-22 109.8 125 52.0
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 1.0e-21 109.0 213 43.2
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 2.2e-21 107.8 106 55.7
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 2.5e-20 104.4 200 40.5
Medtr8g090145 Medicago truncatula HOM05D004480 ORTHO05D005546 8.3e-16 89.4 191 41.4
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 8.9e-10 69.3 205 27.3
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 1.3e-08 65.5 208 24.0


User provided reference genes

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