Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G004032 Manihot esculenta HOM05D001835 ORTHO05D001899 2.4e-237 825.1 417 100.0
QL12p003581 Quercus lobata HOM05D001835 ORTHO05D001899 4.7e-47 193.0 502 36.5
Thecc.03G320500 Theobroma cacao HOM05D001835 ORTHO05D001899 2.6e-45 187.2 508 34.8
COL.COLO4_16746 Corchorus olitorius HOM05D001835 ORTHO05D001899 9.8e-45 185.3 496 35.7
Duzib068G1023 Durio zibethinus HOM05D001835 ORTHO05D001899 3.3e-40 170.2 516 32.8
Duzib205G1377 Durio zibethinus HOM05D001835 ORTHO05D001899 5.6e-40 169.5 509 33.8
Sabra01G0179800 Salix brachista HOM05D001835 ORTHO05D001899 7.5e-37 159.1 416 35.3
Potri.004G235100 Populus trichocarpa HOM05D001835 ORTHO05D001899 1.4e-35 154.8 418 35.6
TWI60G1275 Tripterygium wilfordii HOM05D001835 ORTHO05D001899 1.4e-35 154.8 491 32.2
Cfa012307 Carpinus fangiana HOM05D001835 ORTHO05D001899 3.2e-35 153.7 485 32.6
Haze_08423 Corylus avellana HOM05D001835 ORTHO05D001899 7.0e-35 152.5 485 31.8
MD06G1011200 Malus domestica HOM05D001835 ORTHO05D001899 4.6e-34 149.8 489 31.5
CiPaw.12G055600 Carya illinoinensis HOM05D001835 ORTHO05D001899 6.6e-33 146.0 470 31.5
GSVIVG01036888001 Vitis vinifera HOM05D001835 ORTHO05D001899 1.1e-32 145.2 485 32.8
Prupe.5G013500 Prunus persica HOM05D001835 ORTHO05D001899 1.2e-31 141.7 454 31.1
FAN04G1534 Fragaria x ananassa HOM05D001835 ORTHO05D001899 6.4e-28 129.4 503 29.4
FAN08G0398 Fragaria x ananassa HOM05D001835 ORTHO05D001899 1.2e-26 125.2 485 28.2
Glyma.01G153100 Glycine max HOM05D001835 ORTHO05D001899 2.7e-26 124.0 518 27.6
TAR629G1157 Trochodendron aralioides HOM05D001835 ORTHO05D001899 2.7e-26 124.0 506 29.8
Ciclev10011410m.g Citrus clementina HOM05D001835 ORTHO05D001899 1.0e-25 122.1 492 30.7
FvH4_5g24990 Fragaria vesca HOM05D001835 ORTHO05D001899 1.5e-24 118.2 485 28.0
RcHm_v2.0_Chr7g0215271 Rosa chinensis HOM05D001835 ORTHO05D001899 1.2e-23 115.2 463 29.8
FAN18G0528 Fragaria x ananassa HOM05D001835 ORTHO05D001899 2.8e-23 114.0 482 28.0
Phvul.002G122400 Phaseolus vulgaris HOM05D001835 ORTHO05D001899 1.1e-22 112.1 486 28.6
VMungo1215G2782 Vigna mungo HOM05D001835 ORTHO05D001899 6.8e-22 109.4 471 28.2
Ca_25050_v3 Cicer arietinum L. HOM05D001835 ORTHO05D001899 7.5e-21 105.9 485 27.8
Oeu046771.1 Olea europaea HOM05D001835 ORTHO05D001899 1.9e-19 101.3 511 28.4
Atru.chr8.2612 Acer truncatum HOM05D001835 ORTHO05D001899 2.4e-19 100.9 275 34.9
Dinv37433 Davidia involucrata HOM05D001835 ORTHO05D001899 3.2e-19 100.5 495 27.9
Cc08_g06000 Coffea canephora HOM05D001835 ORTHO05D001899 7.8e-18 95.9 509 28.1
arahy.Tifrunner.gnm1.ann1.CA2BVZ Arachis hypogaea HOM05D001835 ORTHO05D001899 3.0e-17 94.0 492 27.2
arahy.Tifrunner.gnm1.ann1.E2PDKD Arachis hypogaea HOM05D001835 ORTHO05D001899 3.0e-17 94.0 492 27.2
PGR031G1667 Punica granatum HOM05D001835 ORTHO05D001899 2.4e-14 84.3 378 29.6
SalBow4G1085 Salvia bowleyana HOM05D001835 ORTHO05D001899 2.4e-14 84.3 501 26.5
Migut.A00471 Erythranthe guttata HOM05D001835 ORTHO05D001899 4.4e-13 80.1 371 28.3
Peaxi162Scf00550g00444 Petunia axillaris HOM05D001835 ORTHO05D001899 9.9e-13 79.0 484 27.3
Glyma.09G218400 Glycine max HOM05D001835 ORTHO05D001899 1.7e-12 78.2 401 27.9
Hund16112 Selenicereus undatus HOM05D001835 ORTHO05D001899 1.7e-12 78.2 434 26.0
SGA_v2.0_scaffold96G29112 Striga asiatica HOM05D001835 ORTHO05D001899 6.4e-12 76.3 470 26.6
ATR0568G041 Amborella trichopoda HOM05D001835 ORTHO05D001899 1.4e-11 75.1 514 26.1
Rhsim11G0037800 Rhododendron simsii HOM05D001835 ORTHO05D001899 1.4e-11 75.1 324 30.9
AUR62014545 Chenopodium quinoa HOM05D001835 ORTHO05D001899 3.2e-11 73.9 412 26.0
Nn1g09336 Nelumbo nucifera HOM05D001835 ORTHO05D001899 5.4e-11 73.2 422 27.5
CAN.G998.8 Capsicum annuum HOM05D001835 ORTHO05D001899 1.2e-10 72.0 500 27.4
TAR622G1203 Trochodendron aralioides HOM05D001835 ORTHO05D001899 1.2e-10 72.0 428 26.4
CANSAT64G2298 Cannabis sativa HOM05D001835 ORTHO05D001899 1.6e-10 71.6 425 26.8
TAR629G2673 Trochodendron aralioides HOM05D001835 ORTHO05D001899 1.6e-10 71.6 415 27.0
Hund13739 Selenicereus undatus HOM05D001835 ORTHO05D001899 2.7e-10 70.9 440 25.5
TWI75G0523 Tripterygium wilfordii HOM05D001835 ORTHO05D001899 4.6e-10 70.1 427 24.8
CiPaw.16G002300 Carya illinoinensis HOM05D001835 ORTHO05D001899 7.8e-10 69.3 420 25.0
Nitab4.5_0006244g0020 Nicotiana tabacum HOM05D001835 ORTHO05D001899 1.3e-09 68.6 393 27.5
Sopen08g023900 Solanum pennellii HOM05D001835 ORTHO05D001899 1.7e-09 68.2 385 27.5
TWI31G1161 Tripterygium wilfordii HOM05D001835 ORTHO05D001899 2.3e-09 67.8 433 25.4
Aqoxy3G00374 Aquilegia oxysepala HOM05D001835 ORTHO05D001899 3.0e-09 67.4 425 27.1
Cfa018648 Carpinus fangiana HOM05D001835 ORTHO05D001899 3.0e-09 67.4 407 24.6
Manes.06G073900 Manihot esculenta HOM05D001835 ORTHO05D001899 3.0e-09 67.4 402 25.9
AUR62007742 Chenopodium quinoa HOM05D001835 ORTHO05D001899 5.1e-09 66.6 423 27.2
Sed0006802 Sechium edule HOM05D001835 ORTHO05D001899 6.6e-09 66.2 410 26.8
TWI79G0885 Tripterygium wilfordii HOM05D001835 ORTHO05D001899 8.7e-09 65.9 423 23.9
Nitab4.5_0000986g0040 Nicotiana tabacum HOM05D001835 ORTHO05D001899 1.5e-08 65.1 393 26.7
CsaV3_5G028930 Cucumis sativus L. HOM05D001835 ORTHO05D001899 1.9e-08 64.7 408 27.7
Lj2g0003751 Lotus japonicus HOM05D001835 ORTHO05D001899 1.9e-08 64.7 156 34.0
Sed0014405 Sechium edule HOM05D001835 ORTHO05D001899 1.9e-08 64.7 421 27.1
AUR62008958 Chenopodium quinoa HOM05D001835 ORTHO05D001899 2.5e-08 64.3 411 25.3
Dinv05806 Davidia involucrata HOM05D001835 ORTHO05D001899 2.5e-08 64.3 422 27.5
Duzib068G0587 Durio zibethinus HOM05D001835 ORTHO05D001899 2.5e-08 64.3 122 36.1
GSVIVG01032123001 Vitis vinifera HOM05D001835 ORTHO05D001899 3.3e-08 63.9 123 39.8
HanXRQChr17g0551331 Helianthus annuus HOM05D001835 ORTHO05D001899 5.6e-08 63.2 400 27.8
PSO017G1579 Papaver somniferum HOM05D001835 ORTHO05D001899 5.6e-08 63.2 431 27.6
MSTRG.2268 Avicennia marina HOM05D001835 ORTHO05D001899 9.6e-08 62.4 410 26.1
MELO3C005354.2 Cucumis melo HOM05D001835 ORTHO05D001899 9.6e-08 62.4 411 26.3
Ah.16g102080 Amaranthus hybridus HOM05D001835 ORTHO05D001899 1.2e-07 62.0 402 25.6
HanXRQChr15g0476031 Helianthus annuus HOM05D001835 ORTHO05D001899 1.6e-07 61.6 400 27.5
TAR374G1371 Trochodendron aralioides HOM05D001835 ORTHO05D001899 1.6e-07 61.6 402 26.1
Manes.14G096300 Manihot esculenta HOM05D001835 ORTHO05D001899 2.1e-07 61.2 429 25.4
Thecc.02G362900 Theobroma cacao HOM05D001835 ORTHO05D001899 2.8e-07 60.8 435 26.0
ClCG05G023110 Citrullus lanatus HOM05D001835 ORTHO05D001899 4.7e-07 60.1 426 24.6
Lsat_1_v5_gn_3_57300 Lactuca sativa HOM05D001835 ORTHO05D001899 4.7e-07 60.1 390 27.9
Nitab4.5_0004705g0070 Nicotiana tabacum HOM05D001835 ORTHO05D001899 4.7e-07 60.1 363 25.3
Oeu047810.2 Olea europaea HOM05D001835 ORTHO05D001899 6.2e-07 59.7 240 29.2
C02p46140 Brassica napus HOM05D001835 ORTHO05D001899 8.1e-07 59.3 370 27.3
Lj4A131T27 Lonicera japonica HOM05D001835 ORTHO05D001899 8.1e-07 59.3 383 25.8
Zm00001eb334480 Zea mays HOM05D001835 ORTHO05D001899 1.1e-06 58.9 397 23.9
MSTRG.13499 Avicennia marina HOM05D001835 ORTHO05D001899 1.4e-06 58.5 406 25.6
CSS0008982 Camellia sinensis var. sinensis HOM05D001835 ORTHO05D001899 1.4e-06 58.5 400 27.0
Gorai.008G187400 Gossypium raimondii HOM05D001835 ORTHO05D001899 1.4e-06 58.5 414 24.4
Sc10g0001360 Simmondsia chinensis HOM05D001835 ORTHO05D001899 1.4e-06 58.5 414 24.9
vmacro00099 Vaccinium macrocarpon HOM05D001835 ORTHO05D001899 1.8e-06 58.2 530 24.5
CSS0007567 Camellia sinensis var. sinensis HOM05D001835 ORTHO05D001899 2.4e-06 57.8 457 25.6
Rhsim09G0113800 Rhododendron simsii HOM05D001835 ORTHO05D001899 3.1e-06 57.4 433 27.0
Duzib138G0091 Durio zibethinus HOM05D001835 ORTHO05D001899 4.0e-06 57.0 436 23.9
PSO478G3410 Papaver somniferum HOM05D001835 ORTHO05D001899 4.0e-06 57.0 446 26.5
Potri.017G111500 Populus trichocarpa HOM05D001835 ORTHO05D001899 4.0e-06 57.0 415 23.6
vmacro10569 Vaccinium macrocarpon HOM05D001835 ORTHO05D001899 4.0e-06 57.0 426 25.8
Atru.chr8.2613 Acer truncatum HOM05D001835 ORTHO05D001899 5.2e-06 56.6 134 32.8
EL10Ac2g04617 Beta vulgaris HOM05D001835 ORTHO05D001899 5.2e-06 56.6 433 25.2
MBI10_g46800_MAGBIO Magnolia biondii HOM05D001835 ORTHO05D001899 5.2e-06 56.6 423 24.8
MD16G1286000 Malus domestica HOM05D001835 ORTHO05D001899 5.2e-06 56.6 104 40.4
Nitab4.5_0009780g0010 Nicotiana tabacum HOM05D001835 ORTHO05D001899 5.2e-06 56.6 389 24.2
CiPaw.04G039800 Carya illinoinensis HOM05D001835 ORTHO05D001899 6.9e-06 56.2 406 26.4
Haze_17420 Corylus avellana HOM05D001835 ORTHO05D001899 6.9e-06 56.2 479 23.2


User provided reference genes

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