Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 1.2e-249 865.9 416 100.0
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 1.5e-202 709.5 412 81.6
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.3e-198 696.4 407 80.1
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 2.7e-196 688.7 411 78.3
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 2.7e-196 688.7 411 78.3
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 1.5e-191 672.9 411 76.4
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 7.2e-189 664.1 411 74.2
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 2.1e-188 662.5 399 77.9
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 2.7e-188 662.1 405 75.6
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 3.3e-186 655.2 399 76.4
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.3e-185 653.3 409 73.8
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 1.3e-185 653.3 404 73.5
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 1.3e-185 653.3 410 73.2
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 4.5e-183 644.8 400 73.0
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 4.2e-181 638.3 400 72.2
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 5.5e-181 637.9 400 72.2
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 6.1e-180 634.4 405 72.3
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.3e-179 632.5 401 73.3
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.5e-178 629.8 401 72.3
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 5.7e-178 627.9 401 73.1
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 5.7e-178 627.9 401 73.6
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 9.7e-178 627.1 402 70.6
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 1.7e-177 626.3 401 72.1
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 2.8e-177 625.5 404 71.3
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 4.8e-177 624.8 397 72.5
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.8e-176 622.9 401 71.8
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.8e-176 622.9 398 71.6
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 3.1e-176 622.1 401 71.3
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 2.6e-175 619.0 404 70.8
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 1.3e-174 616.7 407 69.8
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 6.5e-174 614.4 401 71.1
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 1.9e-173 612.8 407 70.3
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 1.9e-173 612.8 408 70.1
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 3.2e-173 612.1 408 69.9
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 5.5e-173 611.3 409 69.7
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 9.4e-173 610.5 407 69.8
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 2.1e-172 609.4 407 69.8
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 2.7e-172 609.0 407 69.5
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 2.7e-172 609.0 407 69.5
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 4.7e-172 608.2 407 69.5
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 6.1e-172 607.8 400 69.8
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 6.1e-172 607.8 409 68.9
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 3.0e-171 605.5 401 69.8
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 5.2e-171 604.7 411 67.2
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 6.7e-171 604.4 397 69.0
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 1.1e-170 603.6 408 69.1
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 2.6e-170 602.4 409 68.7
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 7.5e-170 600.9 419 67.8
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 6.3e-169 597.8 405 69.6
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 1.1e-168 597.0 400 68.5
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 3.1e-168 595.5 402 68.7
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 9.1e-168 594.0 409 66.7
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.2e-167 593.6 384 71.4
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 3.5e-167 592.0 398 69.1
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 1.0e-166 590.5 400 68.8
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 2.2e-166 589.3 413 67.1
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 3.2e-165 585.5 399 67.4
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 1.2e-164 583.6 404 66.3
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 2.7e-164 582.4 411 65.7
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 2.6e-162 575.9 417 65.5
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 4.4e-162 575.1 404 66.3
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.3e-161 573.5 391 66.8
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 1.3e-161 573.5 415 63.4
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 1.8e-160 569.7 404 65.8
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 3.1e-160 568.9 398 63.8
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 1.6e-159 566.6 405 62.5
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.6e-159 566.6 393 64.4
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 2.0e-159 566.2 393 64.4
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 2.7e-159 565.8 398 64.3
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 2.9e-158 562.4 397 65.0
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 3.8e-158 562.0 406 65.5
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.5e-157 560.1 406 64.0
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 2.5e-157 559.3 391 65.7
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 2.5e-157 559.3 406 64.8
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 5.5e-157 558.1 391 65.7
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 1.6e-156 556.6 405 62.7
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 2.1e-156 556.2 399 63.2
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 6.1e-156 554.7 402 65.7
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 3.0e-155 552.4 405 63.7
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 3.0e-155 552.4 394 65.0
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 8.8e-155 550.8 390 65.1
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 8.8e-155 550.8 403 65.0
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 5.7e-154 548.1 400 63.2
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 9.8e-154 547.4 396 63.4
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 1.3e-153 547.0 397 63.0
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 1.8e-152 543.1 394 61.9
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 2.4e-152 542.7 397 62.0
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 3.1e-152 542.3 401 61.6
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 1.2e-151 540.4 387 63.8
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 1.3e-150 537.0 400 62.2
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.3e-150 537.0 395 63.3
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 1.3e-150 537.0 392 62.8
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 6.6e-150 534.6 400 62.0
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 1.9e-149 533.1 402 62.9
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 3.3e-149 532.3 401 62.1
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 9.5e-149 530.8 390 62.3
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 1.2e-148 530.4 387 63.3
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 2.1e-148 529.6 390 61.5
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 2.8e-148 529.3 383 62.4
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 8.0e-148 527.7 383 63.7
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 8.0e-148 527.7 383 63.7
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 2.3e-147 526.2 405 61.2
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 4.0e-147 525.4 398 62.3
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 5.2e-147 525.0 419 58.9
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 6.8e-147 524.6 387 63.8
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 5.7e-146 521.5 399 60.2
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 2.9e-145 519.2 412 58.5
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 4.1e-144 515.4 387 61.8
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 5.4e-144 515.0 411 57.9
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 4.6e-143 511.9 384 60.2
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 7.8e-143 511.1 377 62.6
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 7.8e-143 511.1 377 62.6
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 1.5e-138 496.9 394 58.4
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 2.0e-138 496.5 387 58.4
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 9.8e-138 494.2 412 56.8
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 1.7e-137 493.4 391 57.8
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 7.8e-135 484.6 417 58.8
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 1.5e-130 470.3 392 57.9
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 2.7e-127 459.5 412 56.1
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 5.1e-126 455.3 388 53.9
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 9.9e-122 441.0 403 53.8
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.4e-120 437.2 415 50.8
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 1.4e-120 437.2 400 54.2
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 2.5e-117 426.4 413 50.8
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 7.6e-114 414.8 401 52.1
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 2.7e-111 406.4 399 52.1
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 6.2e-108 395.2 375 52.5
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 1.4e-107 394.0 405 49.4
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 3.5e-103 379.4 406 47.8
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 2.3e-102 376.7 408 47.3
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 8.7e-102 374.8 391 49.4
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 2.1e-100 370.2 405 49.1
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 7.1e-96 355.1 398 46.7
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 6.7e-94 348.6 408 46.1
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 1.0e-89 334.7 405 44.0
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 1.4e-83 314.3 249 58.2
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 5.3e-83 312.4 404 43.1
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 2.6e-82 310.1 404 43.6
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 3.6e-79 299.7 404 42.8
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 1.3e-76 291.2 411 42.8
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 4.8e-76 289.3 228 60.5
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 6.3e-76 288.9 395 42.0
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 6.1e-63 245.7 186 60.2
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 1.4e-62 244.6 421 35.4
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 3.7e-60 236.5 156 65.4
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 1.7e-41 174.5 154 56.5
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 1.0e-33 148.7 121 56.2
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 3.8e-33 146.7 319 30.7
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.1e-31 141.0 402 27.4
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 5.2e-30 136.3 89 71.9
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 5.6e-24 116.3 78 65.4
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 1.4e-19 101.7 407 27.3
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 3.2e-11 73.9 45 75.6
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 4.3e-08 63.5 47 57.4
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 8.1e-07 59.3 58 44.8
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 1.8e-06 58.2 42 71.4


User provided reference genes

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