Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G128700 Manihot esculenta HOM05D004632 ORTHO05D005556 1.8e-266 922.5 671 100.0
Potri.006G263400 Populus trichocarpa HOM05D004632 ORTHO05D005556 2.1e-222 776.2 673 87.2
Potri.018G020200 Populus trichocarpa HOM05D004632 ORTHO05D005556 1.0e-221 773.9 673 87.4
Sabra06G0205900 Salix brachista HOM05D004632 ORTHO05D005556 3.1e-218 762.3 669 87.1
TWI32G0830 Tripterygium wilfordii HOM05D004632 ORTHO05D005556 4.0e-205 718.8 674 82.8
Dinv34967 Davidia involucrata HOM05D004632 ORTHO05D005556 3.7e-203 712.2 674 82.8
Atru.chr7.2537 Acer truncatum HOM05D004632 ORTHO05D005556 2.4e-202 709.5 678 82.9
Ciclev10007613m.g Citrus clementina HOM05D004632 ORTHO05D005556 1.2e-201 707.2 671 83.9
CSS0008139 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 6.5e-200 701.4 671 82.6
GSVIVG01035887001 Vitis vinifera HOM05D004632 ORTHO05D005556 2.5e-199 699.5 674 81.9
Prupe.1G392800 Prunus persica HOM05D004632 ORTHO05D005556 7.2e-199 698.0 675 82.4
RcHm_v2.0_Chr6g0299541 Rosa chinensis HOM05D004632 ORTHO05D005556 6.1e-198 694.9 671 82.9
MELO3C016968.2 Cucumis melo HOM05D004632 ORTHO05D005556 1.4e-197 693.7 669 81.9
Duzib168G2284 Durio zibethinus HOM05D004632 ORTHO05D005556 1.4e-197 693.7 665 83.6
Rhsim02G0214000 Rhododendron simsii HOM05D004632 ORTHO05D005556 1.8e-197 693.3 672 81.8
CiPaw.07G229300 Carya illinoinensis HOM05D004632 ORTHO05D005556 1.2e-196 690.6 682 82.0
CsaV3_4G036640 Cucumis sativus L. HOM05D004632 ORTHO05D005556 1.5e-196 690.3 669 81.5
Phvul.009G087600 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 3.4e-196 689.1 671 81.4
Sed0004025 Sechium edule HOM05D004632 ORTHO05D005556 1.1e-194 684.1 669 81.6
VMungo1309G0882 Vigna mungo HOM05D004632 ORTHO05D005556 2.4e-194 682.9 670 81.0
Glyma.06G062300 Glycine max HOM05D004632 ORTHO05D005556 3.1e-194 682.6 668 81.4
Lalb_Chr23g0268241 Lupinus albus HOM05D004632 ORTHO05D005556 2.0e-193 679.9 671 80.9
FvH4_2g41020 Fragaria vesca HOM05D004632 ORTHO05D005556 2.3e-192 676.4 673 81.6
FAN20G0152 Fragaria x ananassa HOM05D004632 ORTHO05D005556 5.0e-192 675.2 685 79.7
Glyma.04G061600 Glycine max HOM05D004632 ORTHO05D005556 6.6e-192 674.9 670 81.3
Lj1g0022186 Lotus japonicus HOM05D004632 ORTHO05D005556 8.6e-192 674.5 668 81.1
TPR.G1835 Trifolium pratense HOM05D004632 ORTHO05D005556 1.5e-191 673.7 668 80.5
FAN20G1191 Fragaria x ananassa HOM05D004632 ORTHO05D005556 4.2e-191 672.2 686 79.4
Psat5g032640 Pisum sativum HOM05D004632 ORTHO05D005556 2.8e-190 669.5 671 80.0
Medtr3g106080 Medicago truncatula HOM05D004632 ORTHO05D005556 1.8e-189 666.8 668 79.8
Ca_15774_v3 Cicer arietinum L. HOM05D004632 ORTHO05D005556 3.0e-189 666.0 668 79.6
Nn8g39852 Nelumbo nucifera HOM05D004632 ORTHO05D005556 4.0e-189 665.6 671 79.4
Cpa.g.sc127.22 Carica papaya HOM05D004632 ORTHO05D005556 1.2e-188 664.1 459 74.1
Actinidia22297 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.5e-188 663.7 671 80.2
Cc09_g08590 Coffea canephora HOM05D004632 ORTHO05D005556 2.6e-188 662.9 672 79.3
ClCG05G016370 Citrullus lanatus HOM05D004632 ORTHO05D005556 3.4e-188 662.5 676 80.3
PSO782G2171 Papaver somniferum HOM05D004632 ORTHO05D005556 9.8e-188 661.0 668 79.5
FAN27G1200 Fragaria x ananassa HOM05D004632 ORTHO05D005556 5.4e-186 655.2 457 74.6
PSO063G4867 Papaver somniferum HOM05D004632 ORTHO05D005556 7.0e-186 654.8 669 79.1
arahy.Tifrunner.gnm1.ann1.8PBG0P Arachis hypogaea HOM05D004632 ORTHO05D005556 9.2e-186 654.4 668 79.5
MD00G1143300 Malus domestica HOM05D004632 ORTHO05D005556 2.0e-185 653.3 462 74.2
PGR042G1415 Punica granatum HOM05D004632 ORTHO05D005556 1.9e-183 646.7 672 79.5
HanXRQChr03g0084861 Helianthus annuus HOM05D004632 ORTHO05D005556 3.3e-183 646.0 666 79.0
Gorai.001G037500 Gossypium raimondii HOM05D004632 ORTHO05D005556 5.6e-183 645.2 665 80.5
EL10Ac1g00704 Beta vulgaris HOM05D004632 ORTHO05D005556 9.5e-183 644.4 678 76.0
arahy.Tifrunner.gnm1.ann1.21LKMJ Arachis hypogaea HOM05D004632 ORTHO05D005556 3.6e-182 642.5 457 71.8
Peaxi162Scf00430g00519 Petunia axillaris HOM05D004632 ORTHO05D005556 4.7e-182 642.1 670 79.0
Aqoxy7G03810 Aquilegia oxysepala HOM05D004632 ORTHO05D005556 6.1e-182 641.7 668 79.2
Gohir.A05G058900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 6.1e-182 641.7 665 80.6
Gohir.A07G031900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 2.3e-181 639.8 668 79.8
CAN.G199.61 Capsicum annuum HOM05D004632 ORTHO05D005556 6.8e-181 638.3 671 77.3
Gohir.D07G035600 Gossypium hirsutum HOM05D004632 ORTHO05D005556 6.8e-181 638.3 668 79.6
BcaB04g19812 Brassica carinata HOM05D004632 ORTHO05D005556 2.4e-178 629.8 672 76.9
BraA09t36273Z Brassica rapa HOM05D004632 ORTHO05D005556 3.5e-177 625.9 670 77.6
A09p06280 Brassica napus HOM05D004632 ORTHO05D005556 4.6e-177 625.5 670 77.6
DCAR_015265 Daucus carota HOM05D004632 ORTHO05D005556 7.8e-177 624.8 676 77.5
THA.LOC104814991 Tarenaya hassleriana HOM05D004632 ORTHO05D005556 7.8e-177 624.8 679 77.0
BolC9t53613H Brassica oleracea HOM05D004632 ORTHO05D005556 1.3e-176 624.0 670 77.3
Sopen06g024220 Solanum pennellii HOM05D004632 ORTHO05D005556 3.0e-176 622.9 676 76.2
Solyc06g065700.3 Solanum lycopersicum HOM05D004632 ORTHO05D005556 8.6e-176 621.3 676 75.9
MBI15_g05236_MAGBIO Magnolia biondii HOM05D004632 ORTHO05D005556 1.1e-175 620.9 457 71.6
ECA240G3507 Erigeron canadensis HOM05D004632 ORTHO05D005556 1.5e-175 620.5 669 77.1
Lsat_1_v5_gn_6_77900 Lactuca sativa HOM05D004632 ORTHO05D005556 1.5e-175 620.5 676 77.2
MSTRG.9370 Avicennia marina HOM05D004632 ORTHO05D005556 9.5e-175 617.8 670 76.9
Eucgr.C02661 Eucalyptus grandis HOM05D004632 ORTHO05D005556 1.2e-174 617.5 690 75.4
Lj7A732T26 Lonicera japonica HOM05D004632 ORTHO05D005556 6.2e-174 615.1 660 73.8
C09p06950 Brassica napus HOM05D004632 ORTHO05D005556 8.0e-174 614.8 670 77.0
Thecc.09G016800 Theobroma cacao HOM05D004632 ORTHO05D005556 2.3e-173 613.2 570 89.1
Lsat_1_v5_gn_7_4261 Lactuca sativa HOM05D004632 ORTHO05D005556 3.1e-173 612.8 462 70.1
BcaC04g23574 Brassica carinata HOM05D004632 ORTHO05D005556 4.0e-173 612.5 670 76.9
Migut.N00603 Erythranthe guttata HOM05D004632 ORTHO05D005556 2.6e-172 609.8 670 76.3
Ah.05g177560 Amaranthus hybridus HOM05D004632 ORTHO05D005556 1.4e-170 604.0 475 67.2
AT5G25150 Arabidopsis thaliana HOM05D004632 ORTHO05D005556 1.9e-170 603.6 671 76.6
Carub.0006s2297 Capsella rubella HOM05D004632 ORTHO05D005556 3.5e-169 599.4 670 76.4
Sp2g22380 Schrenkiella parvula HOM05D004632 ORTHO05D005556 1.0e-168 597.8 670 76.0
ATR0739G094 Amborella trichopoda HOM05D004632 ORTHO05D005556 2.3e-168 596.7 668 74.9
BolC2t12041H Brassica oleracea HOM05D004632 ORTHO05D005556 1.1e-167 594.3 671 75.4
Thhalv10003767m.g Eutrema salsugineum HOM05D004632 ORTHO05D005556 5.6e-167 592.0 672 76.0
SGA_v2.0_scaffold40G15680 Striga asiatica HOM05D004632 ORTHO05D005556 1.2e-164 584.3 705 72.1
CSS0046974 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 2.0e-164 583.6 618 79.1
HPP92_014401 Vanilla planifolia HOM05D004632 ORTHO05D005556 5.8e-164 582.0 668 74.1
Phvul.001G042300 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 3.7e-163 579.3 668 74.7
C02p59830 Brassica napus HOM05D004632 ORTHO05D005556 1.9e-162 577.0 671 74.4
Aa31LG11G4400 Aethionema arabicum HOM05D004632 ORTHO05D005556 3.5e-161 572.8 463 65.0
CDE05G3472 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 4.6e-161 572.4 668 63.0
VMungo0647G2075 Vigna mungo HOM05D004632 ORTHO05D005556 6.0e-161 572.0 668 74.1
Glyma.17G222200 Glycine max HOM05D004632 ORTHO05D005556 7.8e-161 571.6 668 74.0
AUR62023356 Chenopodium quinoa HOM05D004632 ORTHO05D005556 2.3e-160 570.1 670 70.4
CARHR188340 Cardamine hirsuta HOM05D004632 ORTHO05D005556 5.1e-160 568.9 460 65.7
AUR62013801 Chenopodium quinoa HOM05D004632 ORTHO05D005556 7.3e-159 565.1 611 74.8
BraA02t08956Z Brassica rapa HOM05D004632 ORTHO05D005556 2.1e-158 563.5 671 73.3
vmacro11252 Vaccinium macrocarpon HOM05D004632 ORTHO05D005556 8.1e-158 561.6 604 63.9
A02p39940 Brassica napus HOM05D004632 ORTHO05D005556 1.1e-157 561.2 671 73.3
Haze_21427 Corylus avellana HOM05D004632 ORTHO05D005556 3.8e-155 552.7 463 66.3
Os06g0649500 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 6.4e-155 552.0 458 62.7
Nitab4.5_0007182g0050 Nicotiana tabacum HOM05D004632 ORTHO05D005556 6.0e-153 545.4 456 64.3
MSTRG.4644 Avicennia marina HOM05D004632 ORTHO05D005556 1.0e-152 544.7 672 72.8
Hund27424 Selenicereus undatus HOM05D004632 ORTHO05D005556 1.3e-152 544.3 587 53.8
AL6G36810 Arabidopsis lyrata HOM05D004632 ORTHO05D005556 1.9e-151 540.4 671 73.0
TAR626G1191 Trochodendron aralioides HOM05D004632 ORTHO05D005556 3.3e-151 539.7 579 82.4
BcaB07g29936 Brassica carinata HOM05D004632 ORTHO05D005556 5.3e-149 532.3 456 61.6
Nitab4.5_0003976g0020 Nicotiana tabacum HOM05D004632 ORTHO05D005556 2.2e-147 526.9 725 64.0
SalBow1G2567 Salvia bowleyana HOM05D004632 ORTHO05D005556 1.4e-138 497.7 392 68.4
Zm00001eb388650 Zea mays HOM05D004632 ORTHO05D005556 3.3e-135 486.5 569 76.8
BcaC03g17924 Brassica carinata HOM05D004632 ORTHO05D005556 6.2e-134 482.3 671 69.0
Gohir.D05G060932 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.1e-127 461.5 634 60.4
Mapoly0009s0169 Marchantia polymorpha HOM05D004632 ORTHO05D005556 4.0e-125 453.0 684 64.9
TAR625G0176 Trochodendron aralioides HOM05D004632 ORTHO05D005556 5.8e-124 449.1 356 68.3
Oeu061252.3 Olea europaea HOM05D004632 ORTHO05D005556 4.9e-123 446.0 708 63.8
Pp3c12_23330 Physcomitrium patens HOM05D004632 ORTHO05D005556 2.2e-118 430.6 470 53.0
MD15G1039100 Malus domestica HOM05D004632 ORTHO05D005556 1.5e-111 407.9 318 69.2
Oeu013659.1 Olea europaea HOM05D004632 ORTHO05D005556 1.0e-107 395.2 279 72.4
SMO118G0104 Selaginella moellendorffii HOM05D004632 ORTHO05D005556 3.8e-107 393.3 401 52.9
CSS0042581 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 5.0e-107 392.9 291 74.6
Actinidia13189 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.0e-83 315.5 671 58.6
COL.COLO4_18941 Corchorus olitorius HOM05D004632 ORTHO05D005556 6.1e-73 279.6 388 48.7
Manes.03G009801 Manihot esculenta HOM05D004632 ORTHO05D005556 9.8e-71 272.3 398 50.5
Zm00001eb259920 Zea mays HOM05D004632 ORTHO05D005556 2.3e-64 251.1 194 68.0
PRCOL_00000651 Prasinoderma coloniale HOM05D004632 ORTHO05D005556 7.8e-60 236.1 465 34.4
Sed0017212 Sechium edule HOM05D004632 ORTHO05D005556 3.9e-59 233.8 576 48.4
Dinv40981 Davidia involucrata HOM05D004632 ORTHO05D005556 3.3e-58 230.7 279 53.0
MD15G1039000 Malus domestica HOM05D004632 ORTHO05D005556 1.1e-56 225.7 143 80.4
MCO11G306 Micromonas commoda HOM05D004632 ORTHO05D005556 9.2e-53 212.6 479 31.3
VMungo1309G1582 Vigna mungo HOM05D004632 ORTHO05D005556 9.2e-53 212.6 207 58.0
CDE05G1210 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 3.1e-48 197.6 143 69.9
MCO11G293 Micromonas commoda HOM05D004632 ORTHO05D005556 3.1e-48 197.6 525 29.1
CBR_g41144 Chara braunii HOM05D004632 ORTHO05D005556 2.6e-47 194.5 193 49.7
SEGI_13945 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 2.6e-47 194.5 165 55.8
SEGI_28232 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 6.6e-43 179.9 160 61.9
CDE05G3588 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 2.8e-41 174.5 130 63.8
Hma1.2p1_0059F.1_g032640 Hydrangea macrophylla HOM05D004632 ORTHO05D005556 5.4e-37 160.2 291 92.4
AagrBONN_evm.TU.Sc2ySwM_228.3176 Anthoceros agrestis HOM05D003428 ORTHO05D004131 7.1e-37 159.8 147 53.1
CBR_g39739 Chara braunii HOM05D004632 ORTHO05D005556 2.1e-36 158.3 290 37.9
PSO541G0014 Papaver somniferum HOM05D004632 ORTHO05D005556 1.3e-35 155.6 116 69.0
Actinidia10511 Actinidia chinensis HOM05D004632 ORTHO05D005556 2.3e-35 154.8 151 57.0
Sabra18G0022500 Salix brachista HOM05D004632 ORTHO05D005556 1.2e-28 132.5 286 38.5
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 4.9e-22 110.5 456 25.0
Actinidia09762 Actinidia chinensis HOM05D004632 ORTHO05D005556 2.7e-20 104.8 66 75.8
Glyma.14G103500 Glycine max HOM05D004632 ORTHO05D005556 1.1e-16 92.8 109 49.5
SEGI_29407 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.1e-16 92.8 69 60.9
SEGI_30848 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.8e-16 92.0 75 57.3
Haze_26425 Corylus avellana HOM05D004632 ORTHO05D005556 1.4e-13 82.4 181 30.9
FAN15G3250 Fragaria x ananassa HOM05D004632 ORTHO05D005556 4.2e-13 80.9 53 79.2
Actinidia10512 Actinidia chinensis HOM05D004632 ORTHO05D005556 5.5e-13 80.5 83 50.6
Cfa022837 Carpinus fangiana HOM05D004632 ORTHO05D005556 7.1e-13 80.1 503 23.3
MD15G1038900 Malus domestica HOM05D004632 ORTHO05D005556 1.2e-12 79.3 55 74.5
Glyma.14G103600 Glycine max HOM05D004632 ORTHO05D005556 2.4e-08 65.1 51 68.6
Actinidia36729 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.5e-07 62.4 135 34.1
Dinv40325 Davidia involucrata HOM05D004632 ORTHO05D005556 1.5e-07 62.4 37 78.4
SEGI_21073 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.5e-07 62.4 50 68.0
Os07g0205200 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 1.7e-06 58.9 91 40.7


User provided reference genes

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