Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 6.6e-188 660.6 349 100.0
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 4.2e-150 535.0 351 82.3
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 7.2e-150 534.3 351 80.1
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 2.2e-146 522.7 348 80.5
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 3.7e-146 521.9 341 80.6
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 3.1e-145 518.8 351 78.3
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 7.7e-144 514.2 351 78.1
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 1.6e-141 506.5 347 78.7
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 2.7e-141 505.8 344 77.6
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 3.0e-140 502.3 430 67.4
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 4.0e-140 501.9 348 78.4
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 1.2e-139 500.4 350 77.4
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 7.0e-137 491.1 341 77.1
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 1.2e-136 490.3 351 75.8
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 5.9e-136 488.0 341 74.8
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 1.5e-134 483.4 344 74.4
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 9.4e-134 480.7 341 74.8
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 2.1e-133 479.6 345 75.1
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 6.1e-133 478.0 349 74.2
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 1.0e-132 477.2 341 72.7
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 3.0e-132 475.7 351 74.1
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 6.8e-132 474.6 341 72.1
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 6.8e-132 474.6 351 72.6
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 8.8e-132 474.2 353 73.7
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 1.2e-131 473.8 341 75.7
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 1.2e-131 473.8 351 74.1
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 7.5e-131 471.1 326 76.7
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 9.8e-131 470.7 347 72.9
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 4.8e-130 468.4 345 73.9
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 6.3e-130 468.0 326 76.1
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 1.4e-129 466.8 389 67.9
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 2.4e-129 466.1 351 72.4
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 3.1e-129 465.7 345 74.2
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 1.2e-128 463.8 351 72.6
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 1.2e-128 463.8 347 71.5
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 2.7e-128 462.6 326 75.5
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 2.7e-128 462.6 326 75.5
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 2.7e-128 462.6 326 75.5
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 4.5e-128 461.8 321 74.8
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 7.7e-128 461.1 333 73.0
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 1.0e-127 460.7 346 73.1
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 1.3e-127 460.3 322 76.4
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 1.7e-127 459.9 346 69.1
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 5.0e-127 458.4 346 68.8
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 6.5e-127 458.0 342 72.5
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 5.5e-126 454.9 352 71.3
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 2.8e-125 452.6 339 70.5
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 3.6e-125 452.2 340 69.7
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 2.3e-124 449.5 345 69.3
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 3.0e-124 449.1 340 70.3
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 1.2e-123 447.2 344 69.8
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 2.0e-123 446.4 351 67.8
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 3.4e-123 445.7 341 72.7
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 4.4e-123 445.3 334 72.2
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 5.7e-123 444.9 343 69.7
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 5.7e-123 444.9 338 70.4
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 5.7e-123 444.9 336 72.6
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 1.3e-122 443.7 342 67.3
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 2.2e-122 443.0 341 69.8
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 2.8e-122 442.6 344 69.2
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 6.3e-122 441.4 344 70.6
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 1.1e-121 440.7 340 71.5
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 1.4e-121 440.3 342 70.2
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 1.4e-121 440.3 341 69.5
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 5.4e-121 438.3 297 79.1
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 9.2e-121 437.6 340 70.6
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 9.2e-121 437.6 341 69.8
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 1.2e-120 437.2 326 71.8
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 1.6e-120 436.8 341 69.8
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 2.0e-120 436.4 340 69.4
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 7.8e-120 434.5 341 68.6
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 1.0e-119 434.1 366 65.0
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 2.3e-119 433.0 351 69.2
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 2.9e-119 432.6 347 67.4
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 1.5e-118 430.3 342 67.0
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 2.5e-118 429.5 317 72.6
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 1.4e-116 423.7 293 75.1
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 1.8e-116 423.3 341 67.2
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 2.3e-116 422.9 347 65.4
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 2.3e-116 422.9 352 67.0
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 2.3e-116 422.9 341 67.4
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 1.2e-115 420.6 341 66.9
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 1.8e-113 413.3 283 76.3
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 9.2e-113 411.0 299 74.2
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 1.6e-112 410.2 351 65.2
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 2.7e-112 409.5 326 68.1
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 4.6e-112 408.7 337 63.2
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 7.8e-112 407.9 360 64.4
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 1.9e-110 403.3 373 64.1
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 4.7e-109 398.7 347 64.6
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 6.2e-109 398.3 342 61.4
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 1.5e-107 393.7 300 71.3
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 4.9e-106 388.7 291 72.2
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 2.7e-104 382.9 321 64.2
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 3.0e-103 379.4 351 62.7
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 5.0e-103 378.6 341 61.9
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 1.5e-102 377.1 402 58.2
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 5.6e-102 375.2 271 76.4
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 7.3e-102 374.8 309 69.3
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 1.2e-101 374.0 327 63.0
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 4.4e-99 365.5 285 72.3
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 8.3e-98 361.3 395 54.9
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 1.1e-97 360.9 342 60.5
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 3.3e-94 349.4 434 49.8
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 1.2e-93 347.4 235 77.9
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 1.6e-93 347.1 389 57.1
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 3.1e-92 342.8 340 56.5
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 1.5e-91 340.5 337 55.2
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 4.9e-90 335.5 242 75.6
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 8.4e-90 334.7 229 76.4
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 3.9e-87 325.9 248 70.2
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 1.6e-85 320.5 261 67.4
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 1.1e-84 317.8 231 72.7
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 2.4e-84 316.6 405 50.9
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 4.6e-80 302.4 246 67.1
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 1.1e-76 291.2 275 61.8
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 2.3e-71 273.5 300 53.3
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 3.0e-71 273.1 340 47.1
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 5.1e-71 272.3 338 44.7
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 3.7e-69 266.2 178 77.5
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 7.1e-65 251.9 204 64.7
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 3.9e-63 246.1 336 43.2
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 1.5e-62 244.2 238 57.1
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 2.1e-61 240.4 223 59.2
Lalb_Chr23g0276381 Lupinus albus HOM05D002335 ORTHO05D006282 1.8e-55 220.7 141 87.2
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 1.3e-50 204.5 206 57.3
Actinidia38482 Actinidia chinensis HOM05D002335 ORTHO05D006282 3.2e-49 199.9 149 70.5
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 7.9e-48 195.3 161 70.2
MD02G1091600 Malus domestica HOM05D002335 ORTHO05D006282 1.1e-46 191.4 144 66.0
Nitab4.5_0000343g0220 Nicotiana tabacum HOM05D002335 ORTHO05D006282 5.3e-36 156.0 129 65.9
Cpa.g.sc28.37 Carica papaya HOM05D002335 ORTHO05D006282 4.5e-35 152.9 106 80.2
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 8.5e-34 148.7 322 33.2
Nitab4.5_0000343g0210 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.1e-33 148.3 94 81.9
Actinidia38481 Actinidia chinensis HOM05D002335 ORTHO05D006282 8.0e-32 142.1 118 70.3
Ah.14g084930 Amaranthus hybridus HOM05D002335 ORTHO05D006282 5.2e-23 112.8 77 76.6
Solyc07g041890.1 Solanum lycopersicum HOM05D002335 ORTHO05D006282 8.8e-23 112.1 180 42.8
CBR_g26318 Chara braunii HOM05D002335 ORTHO05D006282 7.5e-22 109.0 225 34.2
Medtr2g041390 Medicago truncatula HOM05D002335 ORTHO05D006282 7.7e-19 99.0 107 57.0
Cpa.g.c47777 Carica papaya HOM05D002335 ORTHO05D006282 1.4e-15 88.2 52 88.5
PGSC0003DMG400019032 Solanum tuberosum HOM05D002335 ORTHO05D006282 5.2e-15 86.3 52 80.8
Oeu031390.1 Olea europaea HOM05D002335 ORTHO05D006282 2.0e-14 84.3 50 80.0
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 1.3e-13 81.6 53 79.2
PSO210G7126 Papaver somniferum HOM05D002335 ORTHO05D006282 3.7e-13 80.1 70 60.0
arahy.Tifrunner.gnm1.ann1.HK8DFN Arachis hypogaea HOM05D002335 ORTHO05D006282 9.1e-12 75.5 91 46.2
Oeu011491.2 Olea europaea HOM05D002335 ORTHO05D006282 2.7e-11 73.9 76 52.6
CAN.G2458.1 Capsicum annuum HOM05D002335 ORTHO05D006282 2.3e-07 60.8 74 50.0


User provided reference genes

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