Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G071100 Manihot esculenta HOM05D006224 ORTHO05D007691 2.8e-224 781.6 377 100.0
QL02p086060 Quercus lobata HOM05D006224 ORTHO05D007691 6.8e-154 547.7 365 70.7
QL02p086023 Quercus lobata HOM05D006224 ORTHO05D007691 2.3e-149 532.7 369 69.6
Cpa.g.sc23.139 Carica papaya HOM05D006224 ORTHO05D007691 1.0e-146 523.9 372 69.1
TWI34G0303 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 2.3e-146 522.7 359 69.6
Dinv41578 Davidia involucrata HOM05D006224 ORTHO05D007691 4.4e-145 518.5 372 67.7
Thecc.09G114600 Theobroma cacao HOM05D006224 ORTHO05D007691 8.3e-144 514.2 380 67.4
Ciclev10008608m.g Citrus clementina HOM05D006224 ORTHO05D007691 4.1e-143 511.9 335 71.9
Atru.chr7.1298 Acer truncatum HOM05D006224 ORTHO05D007691 4.6e-142 508.4 342 71.6
Actinidia07421 Actinidia chinensis HOM05D006224 ORTHO05D007691 6.0e-142 508.1 375 66.1
TAR383G0021 Trochodendron aralioides HOM05D006224 ORTHO05D007691 1.3e-141 506.9 364 68.1
Cfa003290 Carpinus fangiana HOM05D006224 ORTHO05D007691 5.0e-141 505.0 349 67.9
MELO3C025318.2 Cucumis melo HOM05D006224 ORTHO05D007691 1.9e-140 503.1 363 65.0
GSVIVG01015431001 Vitis vinifera HOM05D006224 ORTHO05D007691 5.6e-140 501.5 370 66.5
Gorai.004G279400 Gossypium raimondii HOM05D006224 ORTHO05D007691 7.3e-140 501.1 352 68.2
FAN23G1546 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.2e-139 500.4 361 68.4
ClCG06G010400 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.6e-139 500.0 331 69.5
Gohir.D08G261300 Gossypium hirsutum HOM05D006224 ORTHO05D007691 1.6e-139 500.0 352 67.9
MD15G1189600 Malus domestica HOM05D006224 ORTHO05D007691 1.6e-139 500.0 340 70.9
Potri.006G157700 Populus trichocarpa HOM05D006224 ORTHO05D007691 2.8e-139 499.2 329 74.5
Sed0009228 Sechium edule HOM05D006224 ORTHO05D007691 3.6e-139 498.8 370 65.1
Eucgr.E02819 Eucalyptus grandis HOM05D006224 ORTHO05D007691 2.3e-138 496.1 327 72.2
Haze_25683 Corylus avellana HOM05D006224 ORTHO05D007691 5.2e-138 495.0 360 65.6
TWI34G1467 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 6.8e-138 494.6 336 68.5
CiPaw.03G235000 Carya illinoinensis HOM05D006224 ORTHO05D007691 1.5e-137 493.4 369 65.3
RcHm_v2.0_Chr2g0091041 Rosa chinensis HOM05D006224 ORTHO05D007691 1.5e-137 493.4 360 67.2
Gohir.A08G240600 Gossypium hirsutum HOM05D006224 ORTHO05D007691 2.0e-137 493.0 349 66.8
Duzib187G0885 Durio zibethinus HOM05D006224 ORTHO05D007691 5.8e-137 491.5 397 64.0
FAN19G0264 Fragaria x ananassa HOM05D006224 ORTHO05D007691 9.8e-137 490.7 340 70.0
CsaV3_1G030820 Cucumis sativus L. HOM05D006224 ORTHO05D007691 1.7e-136 490.0 363 64.5
FvH4_1g05360 Fragaria vesca HOM05D006224 ORTHO05D007691 1.7e-136 490.0 335 70.4
CANSAT56G1593 Cannabis sativa HOM05D006224 ORTHO05D007691 2.2e-136 489.6 377 66.0
GSVIVG01015429001 Vitis vinifera HOM05D006224 ORTHO05D007691 2.2e-136 489.6 371 64.7
Cc06_g09350 Coffea canephora HOM05D006224 ORTHO05D007691 1.4e-135 486.9 335 67.5
FAN26G2363 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.4e-135 486.9 361 67.0
CANSAT56G0016 Cannabis sativa HOM05D006224 ORTHO05D007691 4.1e-135 485.3 377 65.5
ClCG00G002210 Citrullus lanatus HOM05D006224 ORTHO05D007691 5.4e-135 485.0 375 62.7
ClCG06G010410 Citrullus lanatus HOM05D006224 ORTHO05D007691 5.4e-135 485.0 375 62.7
Hund26119 Selenicereus undatus HOM05D006224 ORTHO05D007691 9.2e-135 484.2 370 64.1
Lsat_1_v5_gn_8_94740 Lactuca sativa HOM05D006224 ORTHO05D007691 2.1e-134 483.0 330 69.7
vmacro06195 Vaccinium macrocarpon HOM05D006224 ORTHO05D007691 3.5e-134 482.3 389 62.5
PSO063G0773 Papaver somniferum HOM05D006224 ORTHO05D007691 3.0e-133 479.2 360 65.0
Lalb_Chr14g0371331 Lupinus albus HOM05D006224 ORTHO05D007691 3.9e-133 478.8 325 69.5
Ciclev10008605m.g Citrus clementina HOM05D006224 ORTHO05D007691 6.6e-133 478.0 389 63.2
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 6.6e-133 478.0 375 63.5
ClCG00G002580 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.5e-132 476.9 315 69.5
PSO782G3139 Papaver somniferum HOM05D006224 ORTHO05D007691 5.6e-132 474.9 362 64.9
arahy.Tifrunner.gnm1.ann1.X15ZNM Arachis hypogaea HOM05D006224 ORTHO05D007691 7.3e-132 474.6 367 64.9
HanXRQChr05g0138301 Helianthus annuus HOM05D006224 ORTHO05D007691 4.7e-131 471.9 330 70.0
Phvul.004G160700 Phaseolus vulgaris HOM05D006224 ORTHO05D007691 4.7e-131 471.9 375 63.2
arahy.Tifrunner.gnm1.ann1.NKB3PQ Arachis hypogaea HOM05D006224 ORTHO05D007691 6.2e-131 471.5 369 64.8
Glyma.09G187600 Glycine max HOM05D006224 ORTHO05D007691 1.4e-130 470.3 353 64.3
Nitab4.5_0013433g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 1.4e-130 470.3 341 68.6
Ca_30117_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 2.3e-130 469.5 361 64.3
Sopen07g017160 Solanum pennellii HOM05D006224 ORTHO05D007691 2.3e-130 469.5 371 62.5
Thhalv10013889m.g Eutrema salsugineum HOM05D006224 ORTHO05D007691 8.9e-130 467.6 363 63.6
Rhsim03G0244800 Rhododendron simsii HOM05D006224 ORTHO05D007691 2.0e-129 466.5 429 54.8
FAN28G2414 Fragaria x ananassa HOM05D006224 ORTHO05D007691 2.6e-129 466.1 343 67.6
Nitab4.5_0002361g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 2.6e-129 466.1 361 64.8
Solyc07g009170.4 Solanum lycopersicum HOM05D006224 ORTHO05D007691 3.4e-129 465.7 371 62.0
Lj2g0020407 Lotus japonicus HOM05D006224 ORTHO05D007691 7.6e-129 464.5 369 62.6
PGSC0003DMG400024204 Solanum tuberosum HOM05D006224 ORTHO05D007691 7.6e-129 464.5 371 62.0
Glyma.18G076000 Glycine max HOM05D006224 ORTHO05D007691 1.7e-128 463.4 325 67.7
DCAR_010440 Daucus carota HOM05D006224 ORTHO05D007691 2.9e-128 462.6 332 65.1
Aa31LG11G5060 Aethionema arabicum HOM05D006224 ORTHO05D007691 3.7e-128 462.2 346 64.7
Aqoxy5G03788 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 1.1e-127 460.7 353 63.7
MBI06_g04550_MAGBIO Magnolia biondii HOM05D006224 ORTHO05D007691 7.1e-127 458.0 360 62.2
AL6G30950 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 9.2e-127 457.6 321 68.2
Migut.K00473 Erythranthe guttata HOM05D006224 ORTHO05D007691 9.2e-127 457.6 383 58.7
Carub.0006s1780 Capsella rubella HOM05D006224 ORTHO05D007691 1.6e-126 456.8 345 64.6
PGR042G0994 Punica granatum HOM05D006224 ORTHO05D007691 1.6e-126 456.8 381 60.1
Medtr6g086510 Medicago truncatula HOM05D006224 ORTHO05D007691 1.0e-125 454.1 329 67.8
Zm00001eb309830 Zea mays HOM05D006224 ORTHO05D007691 1.0e-125 454.1 334 64.7
Sc08g0007140 Simmondsia chinensis HOM05D006224 ORTHO05D007691 2.3e-125 453.0 319 69.0
AUR62011028 Chenopodium quinoa HOM05D006224 ORTHO05D007691 4.3e-124 448.7 364 61.8
AT5G19460 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 5.6e-124 448.4 341 65.4
BolC9t58538H Brassica oleracea HOM05D006224 ORTHO05D007691 7.3e-124 448.0 334 65.3
CDE04G0176 Ceratophyllum demersum HOM05D006224 ORTHO05D007691 1.6e-123 446.8 325 64.3
CSS0033373 Camellia sinensis var. sinensis HOM05D006224 ORTHO05D007691 3.6e-123 445.7 365 61.9
ATR0037G051 Amborella trichopoda HOM05D006224 ORTHO05D007691 1.1e-122 444.1 317 64.4
HPP92_009101 Vanilla planifolia HOM05D006224 ORTHO05D007691 1.1e-122 444.1 331 62.2
SalBow1G0968 Salvia bowleyana HOM05D006224 ORTHO05D007691 3.1e-122 442.6 358 58.4
FAN26G3318 Fragaria x ananassa HOM05D006224 ORTHO05D007691 6.8e-122 441.4 390 59.7
Sabra06G0124600 Salix brachista HOM05D006224 ORTHO05D007691 8.9e-122 441.0 319 70.5
EL10Ac8g18541 Beta vulgaris HOM05D006224 ORTHO05D007691 2.6e-121 439.5 328 64.9
Aqoxy5G03790 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 7.6e-121 438.0 363 60.1
Peaxi162Scf00560g00629 Petunia axillaris HOM05D006224 ORTHO05D007691 2.9e-120 436.0 371 59.8
Psat1g037920 Pisum sativum HOM05D006224 ORTHO05D007691 4.9e-120 435.3 296 71.3
Oeu060631.1 Olea europaea HOM05D006224 ORTHO05D007691 1.1e-119 434.1 361 62.0
Sp6g24950 Schrenkiella parvula HOM05D006224 ORTHO05D007691 1.2e-118 430.6 335 63.9
AL6G30960 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 1.3e-117 427.2 317 64.7
AT5G19470 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 3.9e-117 425.6 317 64.4
ECA236G3755 Erigeron canadensis HOM05D006224 ORTHO05D007691 1.5e-116 423.7 277 73.3
Ca_25513_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 2.1e-115 419.9 279 72.0
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 8.1e-115 417.9 328 64.9
C09p56840 Brassica napus HOM05D006224 ORTHO05D007691 2.2e-112 409.8 346 60.1
THA.LOC104799742 Tarenaya hassleriana HOM05D006224 ORTHO05D007691 2.2e-112 409.8 280 67.5
CAN.G929.19 Capsicum annuum HOM05D006224 ORTHO05D007691 3.5e-110 402.5 270 70.7
SGA_v2.0_scaffold23G10152 Striga asiatica HOM05D006224 ORTHO05D007691 6.0e-110 401.7 360 58.6
TPR.G31456 Trifolium pratense HOM05D006224 ORTHO05D007691 8.1e-107 391.3 309 62.1
Potri.006G157800 Populus trichocarpa HOM05D006224 ORTHO05D007691 1.4e-106 390.6 353 59.5
TPR.G31453 Trifolium pratense HOM05D006224 ORTHO05D007691 2.0e-105 386.7 351 56.7
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 1.2e-102 377.5 302 63.2
Nn8g39262 Nelumbo nucifera HOM05D006224 ORTHO05D007691 1.8e-101 373.6 365 54.5
Lj7A644T17 Lonicera japonica HOM05D006224 ORTHO05D007691 2.1e-99 366.7 402 50.0
Pp3c12_9090 Physcomitrium patens HOM05D006224 ORTHO05D007691 4.8e-99 365.5 297 57.9
Peaxi162Scf00560g00615 Petunia axillaris HOM05D006224 ORTHO05D007691 2.9e-96 356.3 332 54.8
Mapoly0084s0007 Marchantia polymorpha HOM05D006224 ORTHO05D007691 9.6e-92 341.3 302 55.6
SMO347G0504 Selaginella moellendorffii HOM05D006224 ORTHO05D007691 3.1e-90 336.3 293 54.6
HanXRQChr05g0139161 Helianthus annuus HOM05D006224 ORTHO05D007691 5.0e-88 328.9 312 57.4
Prupe.7G186600 Prunus persica HOM05D006224 ORTHO05D007691 1.9e-84 317.0 250 63.2
Cre13.g582201 Chlamydomonas reinhardtii HOM05D006224 ORTHO05D007691 7.9e-78 295.0 298 51.7
unitig_748.g7154 Utricularia gibba HOM05D006224 ORTHO05D007691 1.4e-71 274.2 252 53.6
AagrBONN_evm.TU.Sc2ySwM_228.2202 Anthoceros agrestis HOM05D006224 ORTHO05D007691 7.2e-71 271.9 217 59.0
AUR62033400 Chenopodium quinoa HOM05D006224 ORTHO05D007691 1.5e-68 264.2 243 55.6
Pp3c3_27400 Physcomitrium patens HOM05D006224 ORTHO05D007691 5.9e-65 252.3 296 41.9
Pp3c6_16000 Physcomitrium patens HOM05D006224 ORTHO05D007691 1.9e-63 247.3 298 42.3
MCO11G748 Micromonas commoda HOM05D006224 ORTHO05D007691 4.1e-58 229.6 303 42.2
PRCOL_00004258 Prasinoderma coloniale HOM05D006224 ORTHO05D007691 6.8e-53 212.2 296 40.5
CARHR193460 Cardamine hirsuta HOM05D006224 ORTHO05D007691 1.2e-46 191.4 127 70.9
Os09g0322200 Oryza sativa ssp. japonica HOM05D006224 ORTHO05D007691 1.4e-42 177.9 147 55.8
Ah.09g227190 Amaranthus hybridus HOM05D006224 ORTHO05D007691 4.3e-31 139.8 89 70.8
unitig_748.g7155 Utricularia gibba HOM05D006224 ORTHO05D007691 1.8e-29 134.4 83 73.5
Cfa025487 Carpinus fangiana HOM05D006224 ORTHO05D007691 4.4e-28 129.8 199 37.2
SEGI_32758 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 3.3e-23 113.6 69 69.6
MSTRG.26438 Avicennia marina HOM05D006224 ORTHO05D007691 6.8e-13 79.3 92 46.7
SEGI_12041 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 1.7e-11 74.7 70 55.7
vmacro11393 Vaccinium macrocarpon HOM05D003441 ORTHO05D004516 9.2e-10 68.9 42 71.4
SEGI_03040 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 2.1e-06 57.8 95 36.8


User provided reference genes

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