Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G070000 Manihot esculenta HOM05D005591 ORTHO05D007131 3.4e-192 674.9 351 100.0
Potri.002G234400 Populus trichocarpa HOM05D005591 ORTHO05D007131 2.0e-147 526.2 353 78.5
Ciclev10020911m.g Citrus clementina HOM05D005591 ORTHO05D007131 1.3e-143 513.5 351 76.6
TWI34G1086 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 1.1e-142 510.4 351 74.4
Gorai.011G147400 Gossypium raimondii HOM05D005591 ORTHO05D007131 1.5e-142 510.0 351 76.9
CiPaw.01G109900 Carya illinoinensis HOM05D005591 ORTHO05D007131 3.3e-142 508.8 355 75.2
Duzib212G0264 Durio zibethinus HOM05D005591 ORTHO05D007131 3.6e-141 505.4 351 76.9
Dinv27163 Davidia involucrata HOM05D005591 ORTHO05D007131 5.7e-139 498.0 358 74.9
Sabra02G0178800 Salix brachista HOM05D005591 ORTHO05D007131 2.2e-138 496.1 328 80.2
TWI60G1035 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 2.8e-138 495.7 351 74.1
Gorai.006G226400 Gossypium raimondii HOM05D005591 ORTHO05D007131 1.8e-137 493.0 351 72.9
Thecc.04G188000 Theobroma cacao HOM05D005591 ORTHO05D007131 3.2e-137 492.3 320 80.0
Gohir.A09G209100 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.2e-136 490.3 351 73.5
QL05p063015 Quercus lobata HOM05D005591 ORTHO05D007131 2.7e-136 489.2 348 74.4
CSS0046220 Camellia sinensis var. sinensis HOM05D005591 ORTHO05D007131 3.5e-136 488.8 355 74.1
TAR375G0642 Trochodendron aralioides HOM05D005591 ORTHO05D007131 3.5e-136 488.8 359 74.1
Gohir.D09G202500 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.7e-135 486.5 351 72.4
Actinidia35920 Actinidia chinensis HOM05D005591 ORTHO05D007131 6.6e-135 484.6 355 73.8
PGR083G2576 Punica granatum HOM05D005591 ORTHO05D007131 1.9e-134 483.0 345 75.4
Hma1.2p1_0349F.1_g132330 Hydrangea macrophylla HOM05D005591 ORTHO05D007131 4.3e-134 481.9 345 73.6
Lj2P1154T29 Lonicera japonica HOM05D005591 ORTHO05D007131 1.2e-133 480.3 318 78.9
MSTRG.18314 Avicennia marina HOM05D005591 ORTHO05D007131 4.7e-133 478.4 319 78.7
Solyc01g100250.3 Solanum lycopersicum HOM05D005591 ORTHO05D007131 1.4e-132 476.9 362 71.5
arahy.Tifrunner.gnm1.ann1.ZABD6C Arachis hypogaea HOM05D005591 ORTHO05D007131 3.1e-132 475.7 317 77.0
Phvul.008G142801 Phaseolus vulgaris HOM05D005591 ORTHO05D007131 3.1e-132 475.7 357 72.3
arahy.Tifrunner.gnm1.ann1.8VB164 Arachis hypogaea HOM05D005591 ORTHO05D007131 5.2e-132 474.9 301 80.4
CAN.G1648.2 Capsicum annuum HOM05D005591 ORTHO05D007131 8.9e-132 474.2 324 77.2
THA.LOC104827705 Tarenaya hassleriana HOM05D005591 ORTHO05D007131 1.2e-131 473.8 352 72.7
Glyma.10G181900 Glycine max HOM05D005591 ORTHO05D007131 1.5e-131 473.4 357 71.4
Glyma.20G208100 Glycine max HOM05D005591 ORTHO05D007131 1.5e-131 473.4 357 71.1
Peaxi162Scf00673g00002 Petunia axillaris HOM05D005591 ORTHO05D007131 1.5e-131 473.4 350 72.6
Gohir.A10G133200 Gossypium hirsutum HOM05D005591 ORTHO05D007131 2.0e-131 473.0 351 73.2
PGSC0003DMG402024734 Solanum tuberosum HOM05D005591 ORTHO05D007131 3.4e-131 472.2 363 70.8
Nitab4.5_0006072g0030 Nicotiana tabacum HOM05D005591 ORTHO05D007131 7.5e-131 471.1 359 71.9
Medtr3g005100 Medicago truncatula HOM05D005591 ORTHO05D007131 9.8e-131 470.7 356 70.8
Nitab4.5_0000368g0340 Nicotiana tabacum HOM05D005591 ORTHO05D007131 3.7e-130 468.8 348 73.3
Psat5g221840 Pisum sativum HOM05D005591 ORTHO05D007131 6.4e-130 468.0 357 70.6
VMungo0720G0134 Vigna mungo HOM05D005591 ORTHO05D007131 1.1e-129 467.2 357 70.0
AT1G19800 Arabidopsis thaliana HOM05D005591 ORTHO05D007131 2.4e-129 466.1 352 70.7
TPR.G25529 Trifolium pratense HOM05D005591 ORTHO05D007131 2.4e-129 466.1 358 69.8
TPR.G37202 Trifolium pratense HOM05D005591 ORTHO05D007131 7.0e-129 464.5 358 69.6
Ca_26812_v3 Cicer arietinum L. HOM05D005591 ORTHO05D007131 1.2e-128 463.8 354 71.2
SalBow4G1598 Salvia bowleyana HOM05D005591 ORTHO05D007131 6.0e-128 461.5 321 76.6
Lalb_Chr12g0205911 Lupinus albus HOM05D005591 ORTHO05D007131 7.8e-128 461.1 358 71.5
AUR62010234 Chenopodium quinoa HOM05D005591 ORTHO05D007131 3.0e-127 459.1 352 71.3
EL10Ac9g21576 Beta vulgaris HOM05D005591 ORTHO05D007131 5.0e-127 458.4 340 70.9
AUR62013219 Chenopodium quinoa HOM05D005591 ORTHO05D007131 6.6e-127 458.0 352 71.0
Lj3g0022648 Lotus japonicus HOM05D005591 ORTHO05D007131 1.5e-126 456.8 371 69.0
AL1G32520 Arabidopsis lyrata HOM05D005591 ORTHO05D007131 1.9e-126 456.4 352 69.3
Aa31LG7G4330 Aethionema arabicum HOM05D005591 ORTHO05D007131 2.5e-126 456.1 352 70.2
Nn3g18591 Nelumbo nucifera HOM05D005591 ORTHO05D007131 2.5e-126 456.1 344 72.7
SalBow4G1474 Salvia bowleyana HOM05D005591 ORTHO05D007131 2.5e-126 456.1 319 76.8
Atru.chr7.136 Acer truncatum HOM05D005591 ORTHO05D007131 3.3e-126 455.7 348 69.5
Lalb_Chr12g0209371 Lupinus albus HOM05D005591 ORTHO05D007131 7.3e-126 454.5 369 68.3
ClCG00G002040 Citrullus lanatus HOM05D005591 ORTHO05D007131 1.6e-125 453.4 351 70.9
Thhalv10008071m.g Eutrema salsugineum HOM05D005591 ORTHO05D007131 1.6e-125 453.4 351 68.1
MELO3C011502.2 Cucumis melo HOM05D005591 ORTHO05D007131 2.1e-125 453.0 353 70.5
Sed0000259 Sechium edule HOM05D005591 ORTHO05D007131 2.1e-125 453.0 346 71.1
CsaV3_6G003160 Cucumis sativus L. HOM05D005591 ORTHO05D007131 3.6e-125 452.2 353 70.3
Sp1g17610 Schrenkiella parvula HOM05D005591 ORTHO05D007131 8.0e-125 451.1 351 68.1
Haze_12970 Corylus avellana HOM05D005591 ORTHO05D007131 1.1e-124 450.7 355 70.4
Carub.0001s1933 Capsella rubella HOM05D005591 ORTHO05D007131 1.4e-124 450.3 354 68.9
ClCG08G003960 Citrullus lanatus HOM05D005591 ORTHO05D007131 5.2e-124 448.4 346 71.1
Aqoxy5G02725 Aquilegia oxysepala HOM05D005591 ORTHO05D007131 2.0e-123 446.4 356 70.5
C05p18230 Brassica napus HOM05D005591 ORTHO05D007131 3.4e-123 445.7 354 68.1
CARHR020310 Cardamine hirsuta HOM05D005591 ORTHO05D007131 3.4e-123 445.7 356 68.5
BcaC07g38997 Brassica carinata HOM05D005591 ORTHO05D007131 4.4e-123 445.3 306 75.2
C08p19710 Brassica napus HOM05D005591 ORTHO05D007131 4.4e-123 445.3 306 75.2
Prupe.4G148300 Prunus persica HOM05D005591 ORTHO05D007131 7.5e-123 444.5 352 68.8
BolC8t49608H Brassica oleracea HOM05D005591 ORTHO05D007131 9.8e-123 444.1 306 74.8
COL.COLO4_08690 Corchorus olitorius HOM05D005591 ORTHO05D007131 2.2e-122 443.0 315 75.9
BolC5t30530H Brassica oleracea HOM05D005591 ORTHO05D007131 2.9e-122 442.6 354 67.8
MBI07_g20439_MAGBIO Magnolia biondii HOM05D005591 ORTHO05D007131 6.4e-122 441.4 305 75.4
BraA06t24698Z Brassica rapa HOM05D005591 ORTHO05D007131 8.3e-122 441.0 353 67.4
BcaB03g12900 Brassica carinata HOM05D005591 ORTHO05D007131 3.2e-121 439.1 306 74.8
A06p15920 Brassica napus HOM05D005591 ORTHO05D007131 7.1e-121 438.0 306 75.2
Gohir.D10G133600 Gossypium hirsutum HOM05D005591 ORTHO05D007131 9.2e-121 437.6 351 68.9
Eucgr.E02433 Eucalyptus grandis HOM05D005591 ORTHO05D007131 1.2e-120 437.2 341 69.5
Cc11_g03530 Coffea canephora HOM05D005591 ORTHO05D007131 2.7e-120 436.0 353 67.7
MD05G1209200 Malus domestica HOM05D005591 ORTHO05D007131 6.0e-120 434.9 351 67.5
GSVIVG01031642001 Vitis vinifera HOM05D005591 ORTHO05D007131 1.0e-119 434.1 355 66.2
MD10G1195600 Malus domestica HOM05D005591 ORTHO05D007131 5.1e-119 431.8 351 67.8
SGA_v2.0_scaffold1G00602 Striga asiatica HOM05D005591 ORTHO05D002031 6.6e-119 431.4 306 73.5
SGA_v2.0_scaffold90G27691 Striga asiatica HOM05D005591 ORTHO05D007131 8.6e-119 431.0 290 77.2
RcHm_v2.0_Chr5g0027591 Rosa chinensis HOM05D005591 ORTHO05D007131 1.1e-118 430.6 352 67.0
FAN16G2920 Fragaria x ananassa HOM05D005591 ORTHO05D007131 7.3e-118 427.9 352 67.3
FvH4_3g16560 Fragaria vesca HOM05D005591 ORTHO05D007131 9.5e-118 427.6 352 67.0
FAN11G3688 Fragaria x ananassa HOM05D005591 ORTHO05D007131 4.7e-117 425.2 352 66.8
ATR0681G262 Amborella trichopoda HOM05D005591 ORTHO05D007131 6.2e-117 424.9 295 76.9
Haze_05998 Corylus avellana HOM05D005591 ORTHO05D007131 1.4e-116 423.7 339 68.4
Lsat_1_v5_gn_1_5881 Lactuca sativa HOM05D005591 ORTHO05D007131 1.4e-116 423.7 363 66.7
FAN21G2901 Fragaria x ananassa HOM05D005591 ORTHO05D007131 1.8e-116 423.3 352 67.0
Cfa014468 Carpinus fangiana HOM05D005591 ORTHO05D007131 6.8e-116 421.4 299 74.9
SHI22008 Sapria himalayana HOM05D005591 ORTHO05D007131 4.4e-115 418.7 339 67.3
Sopen01g043760 Solanum pennellii HOM05D005591 ORTHO05D007131 5.8e-115 418.3 326 70.2
Oeu061431.3 Olea europaea HOM05D005591 ORTHO05D007131 9.9e-115 417.5 355 64.5
CAN.G1273.6 Capsicum annuum HOM05D005591 ORTHO05D007131 2.9e-114 416.0 359 63.0
CANSAT78G0984 Cannabis sativa HOM05D005591 ORTHO05D007131 1.9e-113 413.3 355 65.1
Hund00109 Selenicereus undatus HOM05D005591 ORTHO05D007131 3.5e-112 409.1 340 64.7
Duzib151G0749 Durio zibethinus HOM05D005591 ORTHO05D007131 1.5e-110 403.7 352 66.2
Sc08g0001750 Simmondsia chinensis HOM05D005591 ORTHO05D007131 2.8e-109 399.4 319 68.0
HanXRQChr10g0315741 Helianthus annuus HOM05D005591 ORTHO05D007131 1.2e-107 394.0 363 61.7
ECA232G4773 Erigeron canadensis HOM05D005591 ORTHO05D007131 1.3e-106 390.6 291 70.4
SEGI_17332 Sequoiadendron giganteum HOM05D005591 ORTHO05D007131 1.3e-106 390.6 283 71.7
PSO063G3984 Papaver somniferum HOM05D005591 ORTHO05D007131 1.4e-105 387.1 306 68.6
FAN25G3010 Fragaria x ananassa HOM05D005591 ORTHO05D007131 1.9e-105 386.7 352 63.4
CDE02G1973 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 3.2e-105 386.0 319 65.2
PSO339G5872 Papaver somniferum HOM05D005591 ORTHO05D007131 4.2e-105 385.6 306 68.3
SMO367G0743 Selaginella moellendorffii HOM05D005591 ORTHO05D007131 9.3e-105 384.4 267 73.0
Pp3c1_16480 Physcomitrium patens HOM05D005591 ORTHO05D007131 6.0e-104 381.7 284 71.1
Migut.D00413 Erythranthe guttata HOM05D005591 ORTHO05D007131 5.1e-103 378.6 322 64.3
Zm00001eb074560 Zea mays HOM05D005591 ORTHO05D007131 1.5e-102 377.1 263 74.5
Os04g0553000 Oryza sativa ssp. japonica HOM05D005591 ORTHO05D007131 4.3e-102 375.6 260 75.0
Mapoly0204s0010 Marchantia polymorpha HOM05D005591 ORTHO05D007131 6.2e-101 371.7 283 67.5
CBR_g24384 Chara braunii HOM05D005591 ORTHO05D007131 3.1e-100 369.4 304 64.8
Rhsim02G0070200 Rhododendron simsii HOM05D005591 ORTHO05D007131 4.9e-98 362.1 352 60.2
BcaB07g31994 Brassica carinata HOM05D005591 ORTHO05D007131 3.2e-97 359.4 354 58.5
Medtr3g008040 Medicago truncatula HOM05D005591 ORTHO05D007131 1.7e-95 353.6 356 59.0
AagrBONN_evm.TU.Sc2ySwM_117.3947 Anthoceros agrestis HOM05D005591 ORTHO05D007131 1.1e-94 350.9 248 73.4
Cre06.g268200 Chlamydomonas reinhardtii HOM05D005591 ORTHO05D007131 8.1e-85 318.2 290 59.3
HPP92_028331 Vanilla planifolia HOM05D005591 ORTHO05D007131 9.0e-84 314.7 278 65.5
PRCOL_00005194 Prasinoderma coloniale HOM05D005591 ORTHO05D007131 1.3e-82 310.8 252 62.3
Cpa.g.sc8.310 Carica papaya HOM05D005591 ORTHO05D007131 1.3e-77 294.3 177 89.3
MCO01G348 Micromonas commoda HOM05D005591 ORTHO05D007131 4.6e-72 275.8 296 51.7
CDE11G0925 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 6.9e-68 261.9 191 75.9
unitig_22.g5460 Utricularia gibba HOM05D005591 ORTHO05D007131 5.5e-65 252.3 179 72.6
vmacro15598 Vaccinium macrocarpon HOM05D005591 ORTHO05D007131 1.1e-62 244.6 297 52.5
CBR_g4088 Chara braunii HOM05D005591 ORTHO05D007131 6.5e-50 202.2 157 68.8
CBR_g4089 Chara braunii HOM05D005591 ORTHO05D007131 5.9e-43 179.1 117 73.5
unitig_22.g5461 Utricularia gibba HOM05D005591 ORTHO05D007131 2.0e-38 164.1 103 82.5
DCAR_018469 Daucus carota HOM05D005591 ORTHO05D007131 5.9e-35 152.5 100 77.0
DCAR_018470 Daucus carota HOM05D005591 ORTHO05D007131 5.9e-35 152.5 100 77.0
BraA08t34904Z Brassica rapa HOM05D005591 ORTHO05D011946 2.7e-32 143.7 103 68.0
Actinidia29179 Actinidia chinensis HOM05D005591 ORTHO05D007131 4.2e-25 119.8 225 40.4
BcaC05g25857 Brassica carinata HOM05D005591 ORTHO05D007131 1.8e-20 104.4 63 84.1
Ca_28569_v3 Cicer arietinum L. HOM05D005591 ORTHO05D149412 3.6e-16 90.1 193 31.1
Cc01_g18470 Coffea canephora HOM05D005591 ORTHO05D007131 3.0e-10 70.5 43 69.8


User provided reference genes

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