Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 0.0e+00 1299.3 656 100.0
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 2.1e-275 952.2 652 72.4
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 2.5e-273 945.3 652 72.2
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 5.9e-270 934.1 654 70.0
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 4.6e-267 924.5 657 69.7
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 2.3e-266 922.2 657 68.8
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 2.3e-266 922.2 656 70.3
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 1.3e-264 916.4 655 69.6
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 6.3e-264 914.1 657 68.9
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 1.1e-260 903.3 649 68.7
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 1.2e-259 899.8 654 68.0
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 2.7e-259 898.7 654 67.9
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 4.7e-259 897.9 654 67.9
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 7.9e-259 897.1 657 68.8
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 4.8e-256 887.9 663 67.0
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 7.0e-255 884.0 652 66.7
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 1.5e-254 882.9 650 66.8
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 2.9e-253 878.6 647 66.5
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 8.0e-251 870.5 656 66.0
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 1.4e-250 869.8 651 66.5
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 1.7e-248 862.8 657 64.7
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 8.2e-248 860.5 654 65.3
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 4.1e-247 858.2 651 65.9
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 1.6e-246 856.3 656 65.4
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 4.5e-246 854.7 650 63.8
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 5.9e-246 854.4 658 64.4
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 7.7e-246 854.0 656 65.7
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 1.0e-245 853.6 654 65.0
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 1.3e-245 853.2 656 64.2
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 2.2e-245 852.4 651 65.1
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 4.2e-244 848.2 651 65.3
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 2.7e-243 845.5 649 65.0
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 3.6e-243 845.1 654 64.4
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 1.5e-241 839.7 654 64.5
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 2.0e-241 839.3 651 64.7
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 5.7e-241 837.8 654 63.1
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 6.3e-240 834.3 657 65.0
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 1.4e-239 833.2 647 64.8
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 1.8e-239 832.8 650 64.2
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 7.0e-239 830.9 654 63.6
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 1.7e-237 826.2 644 64.1
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 2.9e-237 825.5 660 62.4
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 1.5e-236 823.2 648 64.4
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 2.5e-236 822.4 654 62.4
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 1.2e-235 820.1 656 64.5
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.2e-235 820.1 650 63.2
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 2.1e-235 819.3 646 63.0
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.7e-235 818.9 650 62.8
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 1.8e-234 816.2 646 62.8
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 4.0e-234 815.1 646 62.7
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 1.5e-233 813.1 655 62.3
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 3.4e-233 812.0 645 63.7
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 9.8e-233 810.4 650 62.3
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 9.8e-233 810.4 650 62.3
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 6.3e-232 807.7 653 62.9
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 3.1e-231 805.4 628 63.5
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 9.1e-231 803.9 648 62.3
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 9.1e-231 803.9 647 62.1
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 1.2e-230 803.5 654 59.8
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 2.0e-230 802.7 653 61.9
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 6.6e-229 797.7 653 62.3
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 5.5e-228 794.7 648 61.7
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 2.1e-227 792.7 650 61.7
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 4.7e-227 791.6 651 60.7
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 5.2e-226 788.1 656 60.5
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 2.0e-225 786.2 651 61.4
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 2.0e-225 786.2 653 60.9
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 3.4e-225 785.4 651 61.3
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 7.5e-225 784.3 658 60.0
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 9.8e-225 783.9 651 61.3
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 9.8e-225 783.9 677 58.1
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 2.8e-224 782.3 652 60.6
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 3.7e-224 781.9 649 59.9
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 1.4e-223 780.0 648 60.6
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 1.8e-223 779.6 648 60.6
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 5.4e-223 778.1 654 60.4
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 7.8e-222 774.2 655 61.2
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 7.8e-222 774.2 655 61.2
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 3.8e-221 771.9 654 59.3
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 4.1e-215 751.9 649 58.6
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 1.6e-214 750.0 650 58.9
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 3.5e-214 748.8 646 59.3
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 6.0e-214 748.0 657 58.0
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 7.3e-212 741.1 654 55.2
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 3.1e-210 735.7 652 55.8
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 4.9e-208 728.4 655 57.9
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 4.9e-208 728.4 505 71.7
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 8.3e-208 727.6 651 57.8
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 1.0e-205 720.7 654 56.7
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 1.3e-205 720.3 652 53.8
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 1.2e-203 713.8 648 58.5
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 1.3e-200 703.7 654 56.6
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 2.7e-198 696.0 663 53.4
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 1.4e-194 683.7 684 52.8
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 1.9e-191 673.3 648 55.6
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 4.7e-187 658.7 655 51.1
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 1.8e-186 656.8 645 51.9
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 1.0e-181 641.0 655 49.8
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.1e-180 637.5 488 63.3
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 4.5e-145 519.2 523 51.4
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 1.3e-144 517.7 418 62.4
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 2.2e-139 500.4 356 68.8
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 4.8e-131 472.6 480 51.2
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 6.3e-131 472.2 329 69.9
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 2.2e-128 463.8 617 44.7
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 8.3e-123 445.3 666 38.7
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 1.7e-112 411.0 649 36.4
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 1.8e-101 374.4 656 36.1
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 3.3e-95 353.6 365 50.1
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 4.3e-95 353.2 269 60.6
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 6.2e-94 349.4 510 40.0
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 8.3e-83 312.4 278 53.6
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 1.7e-75 288.1 756 29.1
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 4.6e-65 253.4 710 27.6
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 6.0e-65 253.1 345 39.4
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 1.5e-63 248.4 277 48.0
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 3.3e-63 247.3 271 48.3
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 1.9e-50 204.9 223 50.2
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 3.7e-38 164.1 236 36.0
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 3.6e-33 147.5 81 80.2
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 4.1e-29 134.0 127 55.1
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 2.3e-24 118.2 209 33.0
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 3.0e-24 117.9 101 50.5
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 4.8e-22 110.5 274 30.3
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.6e-20 105.5 86 50.0
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 2.0e-20 105.1 65 80.0
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 7.7e-20 103.2 212 32.5
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 7.2e-18 96.7 76 59.2
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 2.1e-17 95.1 65 69.2
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.4e-16 92.4 160 38.8
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.8e-16 92.0 103 49.5
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.1e-15 89.4 76 56.6
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 1.8e-13 82.0 97 47.4
RcHm_v2.0_Chr6g0291761 Rosa chinensis HOM05D005402 ORTHO05D007036 9.4e-10 69.7 75 48.0
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 1.6e-09 68.9 97 38.1
Dinv21729 Davidia involucrata HOM05D005402 ORTHO05D007036 3.4e-07 61.2 68 58.8
VMungo1215G1513 Vigna mungo HOM05D005402 ORTHO05D433923 9.8e-07 59.7 41 80.5
CDE05G1743 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 6.3e-06 57.0 51 45.1


User provided reference genes

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