Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 0.0e+00 1289.2 755 100.0
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 2.3e-153 547.0 622 57.1
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 6.3e-143 512.3 635 54.3
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 4.0e-137 493.0 613 55.6
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 4.4e-136 489.6 608 51.2
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 2.8e-135 486.9 612 52.1
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 6.1e-130 469.2 627 48.3
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 8.0e-130 468.8 619 50.9
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 3.0e-129 466.8 610 52.5
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 2.6e-128 463.8 612 53.8
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 1.7e-127 461.1 609 52.9
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 1.2e-125 454.9 608 55.3
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 4.6e-125 453.0 626 48.7
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 1.3e-124 451.4 608 59.9
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 3.3e-123 446.8 608 55.9
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 7.3e-123 445.7 621 58.3
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 1.6e-122 444.5 608 55.6
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 4.7e-122 443.0 622 53.7
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 2.3e-121 440.7 619 48.9
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 7.5e-120 435.6 620 57.7
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 1.7e-119 434.5 613 50.2
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 4.6e-117 426.4 616 49.0
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 6.0e-117 426.0 622 56.8
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 1.0e-116 425.2 611 53.8
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 3.9e-116 423.3 621 53.1
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 2.1e-114 417.5 614 47.1
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 8.1e-114 415.6 614 49.3
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 1.1e-113 415.2 563 47.8
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 1.1e-113 415.2 614 51.6
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 3.1e-113 413.7 607 48.1
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 5.2e-113 412.9 638 50.0
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 1.2e-112 411.8 614 43.8
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 1.5e-112 411.4 625 45.4
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 1.7e-111 407.9 612 52.0
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 2.2e-111 407.5 607 46.0
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 6.4e-111 406.0 612 51.3
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 8.3e-111 405.6 629 55.5
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 5.4e-110 402.9 605 48.8
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 9.2e-110 402.1 614 52.9
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 1.2e-109 401.7 618 55.3
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 3.5e-109 400.2 614 45.1
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 1.7e-108 397.9 616 52.1
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 1.7e-108 397.9 614 47.2
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 3.9e-108 396.7 625 49.6
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 3.9e-108 396.7 618 50.3
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 3.9e-108 396.7 609 46.1
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 1.1e-107 395.2 632 44.8
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 1.5e-107 394.8 664 51.1
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 1.5e-107 394.8 601 48.6
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 3.3e-107 393.7 567 49.6
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 4.3e-107 393.3 617 51.5
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 2.1e-106 391.0 610 49.8
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 2.8e-106 390.6 624 49.2
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 3.6e-106 390.2 603 55.4
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 1.1e-105 388.7 613 48.3
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 4.0e-105 386.7 623 49.1
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 6.8e-105 386.0 623 49.1
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 6.8e-105 386.0 585 49.6
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 2.6e-104 384.0 621 49.1
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 9.9e-104 382.1 616 48.9
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 1.3e-103 381.7 606 47.7
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 8.4e-103 379.0 622 48.9
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 4.1e-102 376.7 621 47.8
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 4.1e-102 376.7 607 51.6
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 1.5e-99 368.2 604 48.7
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 2.5e-99 367.5 623 42.9
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 7.3e-99 365.9 608 47.0
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 7.3e-99 365.9 608 47.0
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 9.6e-99 365.5 611 50.2
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 1.6e-98 364.8 615 46.0
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 6.2e-98 362.8 610 50.7
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 1.8e-97 361.3 608 46.7
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 3.1e-97 360.5 609 51.1
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 4.4e-96 356.7 613 50.7
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 7.6e-96 355.9 228 78.5
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 3.8e-95 353.6 608 44.7
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 1.1e-94 352.1 620 52.6
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 1.4e-94 351.7 605 49.8
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 4.6e-93 346.7 613 47.1
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 1.3e-92 345.1 656 42.7
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 2.3e-92 344.4 631 42.6
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 6.6e-92 342.8 615 46.0
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 1.9e-91 341.3 605 47.8
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 4.3e-91 340.1 530 50.4
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 1.4e-89 335.1 555 47.4
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 4.5e-88 330.1 615 49.4
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 1.3e-87 328.6 574 40.8
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 3.8e-87 327.0 548 46.4
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 8.4e-87 325.9 642 41.9
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 5.1e-84 316.6 635 45.4
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 3.1e-81 307.4 267 61.8
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 3.4e-80 303.9 542 43.5
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 2.1e-77 294.7 538 42.9
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 8.7e-76 289.3 578 45.7
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 1.9e-75 288.1 279 58.4
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 4.3e-75 287.0 616 43.8
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 3.7e-74 283.9 389 48.1
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 7.6e-72 276.2 220 65.5
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 1.2e-69 268.9 188 71.8
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 9.7e-67 259.2 592 41.9
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 4.8e-66 256.9 223 60.1
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 6.3e-66 256.5 520 50.0
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 1.4e-65 255.4 149 81.9
TPR.G23111 Trifolium pratense HOM05D004380 ORTHO05D005134 1.8e-65 255.0 148 79.7
Cpa.g.sc69.32 Carica papaya HOM05D004380 ORTHO05D005134 1.5e-64 251.9 157 79.0
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 2.6e-64 251.1 622 43.1
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 2.6e-64 251.1 176 69.9
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 7.6e-64 249.6 166 72.3
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 1.3e-63 248.8 250 56.0
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 3.8e-63 247.3 215 59.1
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 1.1e-62 245.7 216 58.8
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 1.9e-62 245.0 158 75.9
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 3.2e-62 244.2 200 67.0
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 1.2e-61 242.3 179 72.1
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 3.6e-61 240.7 152 77.0
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 1.3e-58 232.3 216 56.9
DCAR_007574 Daucus carota HOM05D004380 ORTHO05D005134 2.9e-55 221.1 149 72.5
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 6.5e-55 219.9 224 54.0
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 7.9e-53 213.0 158 69.6
TPR.G20578 Trifolium pratense HOM05D004380 ORTHO05D005134 1.5e-51 208.8 113 81.4
arahy.Tifrunner.gnm1.ann1.MH0ZUI Arachis hypogaea HOM05D004380 ORTHO05D005134 6.3e-50 203.4 113 79.6
Oeu037610.2 Olea europaea HOM05D004380 ORTHO05D005134 1.6e-45 188.7 505 39.2
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 3.5e-40 171.0 545 31.4
Ca_23634_v3 Cicer arietinum L. HOM05D000346 ORTHO05D000326 1.0e-39 169.5 444 40.5
CSS0001415 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 9.4e-38 162.9 86 83.7
CSS0037993 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 9.4e-38 162.9 86 83.7
Hund11272 Selenicereus undatus HOM05D004380 ORTHO05D005134 1.8e-36 158.7 148 68.9
Cre01.g003487 Chlamydomonas reinhardtii HOM05D004380 ORTHO05D005134 8.8e-36 156.4 203 44.8
Haze_13061 Corylus avellana HOM05D000001 ORTHO05D010365 1.5e-35 155.6 152 66.4
MCO15G532 Micromonas commoda HOM05D004380 ORTHO05D005134 5.3e-33 147.1 258 34.9
CSS0014122 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 7.0e-33 146.7 439 39.9
CSS0026269 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 7.0e-33 146.7 439 39.9
QL12p007207 Quercus lobata HOM05D004380 ORTHO05D005134 1.6e-32 145.6 169 58.6
Lsat_1_v5_gn_3_2421 Lactuca sativa HOM05D004380 ORTHO05D005134 5.2e-28 130.6 134 61.2
PRCOL_00005638 Prasinoderma coloniale HOM05D004380 ORTHO05D005134 3.4e-27 127.9 199 39.2
SHI10270 Sapria himalayana HOM05D004380 ORTHO05D005134 3.7e-26 124.4 291 42.6
TPR.G11131 Trifolium pratense HOM05D004380 ORTHO05D005134 1.0e-23 116.3 135 55.6
CAN.G1186.1 Capsicum annuum HOM05D004380 ORTHO05D005134 1.7e-23 115.5 152 49.3
Zm00001eb400590 Zea mays HOM05D004380 ORTHO05D005134 5.5e-22 110.5 236 36.4
Sp5g21510 Schrenkiella parvula HOM05D004380 ORTHO05D005134 7.2e-22 110.2 191 41.9
Dinv40656 Davidia involucrata HOM05D000301 ORTHO05D000303 3.0e-20 104.8 56 82.1
AL3G52660 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 6.3e-18 97.1 66 68.2
TPR.G17657 Trifolium pratense HOM05D004380 ORTHO05D005134 2.4e-17 95.1 117 47.9
HPP92_020129 Vanilla planifolia HOM05D004380 ORTHO05D005134 2.7e-16 91.7 133 44.4
COL.COLO4_33038 Corchorus olitorius HOM05D004380 ORTHO05D005134 1.7e-15 89.0 89 61.8
TPR.G22617 Trifolium pratense HOM05D004380 ORTHO05D005134 1.7e-15 89.0 198 49.0
Lj2C247T7 Lonicera japonica HOM05D004380 ORTHO05D005134 4.3e-14 84.3 76 63.2
Cfa026589 Carpinus fangiana HOM05D004380 ORTHO05D005134 6.1e-13 80.5 139 36.0
Medtr8g446970 Medicago truncatula HOM05D004380 ORTHO05D005134 1.4e-12 79.3 344 34.0
C05p31200 Brassica napus HOM05D004380 ORTHO05D005134 1.1e-09 69.7 64 57.8
arahy.Tifrunner.gnm1.ann1.FR68MS Arachis hypogaea HOM05D005435 ORTHO05D005134 5.4e-09 67.4 68 66.2
TPR.G23078 Trifolium pratense HOM05D004380 ORTHO05D005134 1.6e-08 65.9 41 80.5
Medtr4g081620 Medicago truncatula HOM05D004380 ORTHO05D005134 1.3e-07 62.8 84 51.2
Cpa.g.c30383 Carica papaya HOM05D004380 ORTHO05D005134 5.0e-07 60.8 59 59.3
Medtr4g081725 Medicago truncatula HOM05D004380 ORTHO05D005134 6.6e-07 60.5 69 49.3
arahy.Tifrunner.gnm1.ann1.VXMI6Z Arachis hypogaea HOM05D004380 ORTHO05D005134 5.6e-06 57.4 53 66.0


User provided reference genes

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