Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 0.0e+00 1894.0 982 100.0
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 0.0e+00 1432.5 975 78.1
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 0.0e+00 1102.8 957 64.7
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 0.0e+00 1080.5 950 64.4
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 0.0e+00 1080.1 1042 60.1
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 5.1e-310 1067.8 946 62.7
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.5e-309 1066.2 985 61.8
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 4.5e-306 1054.7 946 62.3
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 4.8e-300 1034.6 1013 58.9
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 1.3e-297 1026.5 944 61.9
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 3.2e-296 1021.9 951 61.7
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 3.5e-295 1018.5 945 61.2
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 3.9e-294 1015.0 955 58.6
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.9e-291 1004.2 949 59.6
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 1.2e-290 1003.4 956 60.0
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 3.4e-290 1001.9 949 59.6
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.5e-290 1001.5 949 59.6
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 6.5e-289 997.7 890 61.9
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 5.5e-288 994.6 950 59.8
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 3.9e-286 988.4 956 59.6
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 8.7e-286 987.3 950 60.6
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 6.9e-283 977.6 949 58.3
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 6.9e-283 977.6 955 59.7
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.3e-281 973.4 949 58.1
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 2.5e-280 969.1 938 58.1
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 2.5e-280 969.1 982 58.8
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.1e-279 966.1 950 59.5
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 6.1e-279 964.5 944 59.6
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 8.7e-278 960.7 943 59.6
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.7e-276 955.3 951 57.1
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.6e-274 949.1 953 56.9
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 8.5e-273 944.1 942 58.7
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.2e-271 940.3 949 58.6
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.8e-270 936.4 950 56.4
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 1.8e-262 909.8 968 55.1
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 1.3e-260 903.7 934 56.4
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 5.5e-256 888.3 962 54.7
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 2.7e-255 885.9 960 56.0
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.2e-254 881.7 911 55.3
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 8.8e-254 880.9 943 55.2
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 4.8e-252 875.2 956 53.5
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 1.4e-251 873.6 950 54.1
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.4e-251 872.8 912 54.5
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.2e-250 870.5 911 54.0
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.7e-250 869.4 975 54.8
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 3.8e-249 865.5 929 54.5
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 8.0e-247 857.8 943 53.7
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 8.0e-247 857.8 955 54.1
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.8e-246 856.7 994 53.3
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 3.0e-246 855.9 966 53.2
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 3.4e-245 852.4 941 54.1
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 9.8e-245 850.9 955 53.5
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 7.7e-242 841.3 678 68.3
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 1.1e-240 837.4 932 53.2
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 6.8e-238 828.2 938 53.6
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 3.1e-235 819.3 955 51.4
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 1.2e-234 817.4 870 56.8
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 8.6e-233 811.2 932 54.3
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 5.6e-232 808.5 953 51.8
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.1e-231 806.6 926 53.1
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.8e-230 803.5 893 54.4
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 1.3e-228 797.3 943 51.2
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 3.2e-227 792.7 934 52.1
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 3.2e-227 792.7 848 53.9
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 7.0e-227 791.6 793 58.0
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.7e-226 789.6 943 52.1
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 3.9e-225 785.8 1004 49.8
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.6e-225 785.0 924 53.5
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.9e-224 783.5 935 51.7
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.5e-224 783.1 848 53.5
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 4.3e-224 782.3 969 51.0
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 2.6e-221 773.1 926 51.1
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 2.4e-219 766.5 897 52.7
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 7.0e-219 765.0 900 51.6
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 1.7e-217 760.4 976 49.2
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 1.5e-216 757.3 898 49.4
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 5.6e-216 755.4 1024 47.1
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 5.2e-214 748.8 947 50.6
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 3.4e-213 746.1 954 49.5
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 5.8e-213 745.3 905 49.8
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 2.1e-207 726.9 938 49.4
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 2.1e-207 726.9 932 49.1
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 1.5e-205 720.7 886 50.7
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 2.6e-205 719.9 930 50.0
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 2.9e-204 716.5 908 49.2
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 6.4e-204 715.3 957 48.1
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.2e-202 711.1 881 48.6
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 2.7e-202 709.9 878 48.4
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 6.0e-202 708.8 935 47.5
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 1.7e-201 707.2 920 48.3
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 7.3e-200 701.8 973 47.4
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 4.7e-199 699.1 929 47.7
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.0e-198 696.0 936 48.4
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.7e-196 690.6 929 48.2
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 4.2e-195 686.0 682 57.8
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 2.1e-191 673.7 958 46.7
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 2.6e-189 666.8 619 61.9
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 6.4e-188 662.1 961 46.9
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 3.2e-187 659.8 942 46.0
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 1.6e-183 647.5 874 47.7
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 1.1e-182 644.8 946 46.3
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 1.0e-177 628.2 946 46.1
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 3.0e-177 626.7 960 44.2
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.8e-175 620.2 918 44.0
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 4.0e-174 616.3 991 44.4
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 6.9e-174 615.5 968 43.4
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 2.6e-173 613.6 976 44.9
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 1.1e-171 608.2 940 45.0
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 2.1e-170 604.0 873 47.0
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 6.0e-170 602.4 894 47.2
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 1.4e-166 591.3 875 45.9
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 4.1e-166 589.7 923 45.6
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 1.1e-163 581.6 983 43.3
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 4.2e-163 579.7 921 43.9
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 7.2e-163 578.9 695 53.4
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 3.9e-161 573.2 977 39.5
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.1e-160 571.6 708 50.3
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 6.3e-159 565.8 506 63.0
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 3.4e-157 560.1 969 41.7
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.3e-153 547.4 701 47.9
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 8.2e-151 538.9 636 51.7
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 6.5e-148 529.3 946 41.6
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 5.5e-147 526.2 967 41.6
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 1.2e-146 525.0 977 41.2
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 2.7e-146 523.9 944 41.6
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 3.6e-146 523.5 963 42.1
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 4.7e-146 523.1 963 42.3
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 8.0e-146 522.3 979 40.6
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 8.0e-146 522.3 979 40.6
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 3.0e-145 520.4 990 41.0
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 3.0e-145 520.4 963 42.4
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 8.8e-145 518.8 990 41.1
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 8.8e-145 518.8 779 43.5
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 1.2e-141 508.4 977 40.8
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 1.3e-140 505.0 465 61.5
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 2.9e-140 503.8 943 40.7
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 5.0e-140 503.1 947 39.2
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 1.8e-137 494.6 841 41.1
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.7e-132 478.0 437 63.2
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.3e-127 461.8 955 37.8
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 1.1e-123 448.7 918 38.5
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 3.4e-120 437.2 863 40.1
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 9.5e-115 419.1 865 38.8
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.3e-113 414.5 919 34.8
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 1.2e-104 385.6 569 44.1
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.0e-100 372.5 901 35.2
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 3.9e-100 370.5 292 66.4
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 3.4e-96 357.5 628 43.5
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 7.5e-96 356.3 337 58.2
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 5.4e-94 350.1 934 33.9
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 9.6e-83 312.8 362 53.3
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 7.6e-80 303.1 781 33.4
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 4.9e-79 300.4 834 33.6
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 2.7e-77 294.7 393 47.8
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 3.1e-73 281.2 229 65.5
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 4.9e-71 273.9 755 32.1
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 2.7e-61 241.5 978 27.6
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 2.5e-59 235.0 283 50.5
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 9.6e-59 233.0 421 42.5
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 3.7e-58 231.1 282 53.2
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 3.7e-58 231.1 355 44.2
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 2.5e-54 218.4 762 31.1
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 8.5e-47 193.4 587 30.3
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 6.1e-45 187.2 118 75.4
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.8e-42 178.3 293 43.7
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.4e-40 171.4 264 44.3
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.8e-39 167.9 559 29.3
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.2e-37 162.9 227 48.5
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 9.1e-33 146.7 103 68.9
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 4.8e-26 124.4 152 49.3
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 6.3e-26 124.0 112 56.2
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 7.2e-22 110.5 118 55.1
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 4.0e-20 104.8 90 74.4
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 3.4e-19 101.7 154 37.7
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.2e-13 83.2 92 48.9
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 3.6e-13 81.6 126 41.3
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 6.1e-13 80.9 145 37.2
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 8.0e-13 80.5 129 45.0
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 8.8e-12 77.0 44 75.0
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.7e-10 71.6 175 36.0
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 1.7e-07 62.8 94 34.0
AUR62012685 Chenopodium quinoa HOM05D000561 ORTHO05D000514 2.3e-07 62.4 154 28.6
AUR62021972 Chenopodium quinoa HOM05D000561 ORTHO05D000514 2.3e-07 62.4 154 28.6


User provided reference genes

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