Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G151900 Manihot esculenta HOM05D004929 ORTHO05D006492 6.7e-204 713.8 355 100.0
Duzib147G0164 Durio zibethinus HOM05D004929 ORTHO05D006492 3.3e-174 615.1 350 85.1
Thecc.04G019500 Theobroma cacao HOM05D004929 ORTHO05D006492 1.2e-173 613.2 351 84.0
Dinv25726 Davidia involucrata HOM05D004929 ORTHO05D006492 7.5e-171 604.0 353 83.0
MD09G1023000 Malus domestica HOM05D004929 ORTHO05D006492 2.9e-170 602.1 353 82.2
Prupe.3G293800 Prunus persica HOM05D004929 ORTHO05D006492 3.7e-170 601.7 353 83.3
CsaV3_5G027030 Cucumis sativus L. HOM05D004929 ORTHO05D006492 4.9e-170 601.3 353 81.6
MELO3C021592.2 Cucumis melo HOM05D004929 ORTHO05D006492 1.1e-169 600.1 353 81.3
Gorai.006G034800 Gossypium raimondii HOM05D004929 ORTHO05D006492 1.1e-169 600.1 350 82.6
Gohir.D09G029800 Gossypium hirsutum HOM05D004929 ORTHO05D006492 1.4e-169 599.7 350 82.3
Nn8g40033 Nelumbo nucifera HOM05D004929 ORTHO05D006492 1.4e-169 599.7 347 81.8
Potri.001G343400 Populus trichocarpa HOM05D004929 ORTHO05D006492 3.2e-169 598.6 352 81.8
Gohir.A09G030100 Gossypium hirsutum HOM05D004929 ORTHO05D006492 7.0e-169 597.4 350 81.7
Sabra16G0222700 Salix brachista HOM05D004929 ORTHO05D006492 1.2e-168 596.7 347 82.4
ClCG09G019380 Citrullus lanatus HOM05D004929 ORTHO05D006492 2.0e-168 595.9 353 80.5
Ciclev10015593m.g Citrus clementina HOM05D004929 ORTHO05D006492 6.0e-168 594.3 347 81.6
PGR142G3088 Punica granatum HOM05D004929 ORTHO05D006492 6.0e-168 594.3 347 82.1
GSVIVG01032385001 Vitis vinifera HOM05D004929 ORTHO05D006492 7.8e-168 594.0 349 81.9
TAR633G2310 Trochodendron aralioides HOM05D004929 ORTHO05D006492 3.9e-167 591.7 346 81.2
Aqoxy5G00914 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 6.6e-167 590.9 348 81.3
MD17G1022300 Malus domestica HOM05D004929 ORTHO05D006492 1.1e-166 590.1 351 81.5
CiPaw.03G045500 Carya illinoinensis HOM05D004929 ORTHO05D006492 1.5e-166 589.7 349 81.9
PSO384G0906 Papaver somniferum HOM05D004929 ORTHO05D006492 1.9e-166 589.3 350 80.3
PSO699G0033 Papaver somniferum HOM05D004929 ORTHO05D006492 1.9e-166 589.3 349 80.5
SalBow7G3047 Salvia bowleyana HOM05D004929 ORTHO05D006492 2.5e-166 589.0 352 79.5
Cfa007339 Carpinus fangiana HOM05D004929 ORTHO05D006492 3.3e-166 588.6 349 81.9
CAN.G473.20 Capsicum annuum HOM05D004929 ORTHO05D006492 5.6e-166 587.8 353 80.5
TWI12G0632 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 1.2e-165 586.6 352 81.2
Cc09_g04510 Coffea canephora HOM05D004929 ORTHO05D006492 1.6e-165 586.3 352 79.5
QL02p074005 Quercus lobata HOM05D004929 ORTHO05D006492 1.6e-165 586.3 348 80.7
Actinidia05982 Actinidia chinensis HOM05D004929 ORTHO05D006492 2.1e-165 585.9 353 79.9
Lju41A43T26 Lonicera japonica HOM05D004929 ORTHO05D006492 2.1e-165 585.9 352 79.3
FvH4_6g51800 Fragaria vesca HOM05D004929 ORTHO05D006492 2.8e-165 585.5 353 80.5
Nitab4.5_0001860g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 2.8e-165 585.5 350 78.9
Rhsim10G0014700 Rhododendron simsii HOM05D004929 ORTHO05D006492 2.8e-165 585.5 351 80.9
AT3G01640 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 4.7e-165 584.7 351 78.3
FAN09G2944 Fragaria x ananassa HOM05D004929 ORTHO05D006492 1.1e-164 583.6 353 80.2
FAN14G2766 Fragaria x ananassa HOM05D004929 ORTHO05D006492 1.1e-164 583.6 353 80.5
Sed0027438 Sechium edule HOM05D004929 ORTHO05D006492 1.1e-164 583.6 353 79.0
Haze_14758 Corylus avellana HOM05D004929 ORTHO05D006492 1.4e-164 583.2 349 81.1
RcHm_v2.0_Chr2g0173281 Rosa chinensis HOM05D004929 ORTHO05D006492 1.4e-164 583.2 353 80.2
AL3G10510 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 1.8e-164 582.8 346 79.2
vmacro05876 Vaccinium macrocarpon HOM05D004929 ORTHO05D006492 2.3e-164 582.4 347 80.4
CiPaw.04G029600 Carya illinoinensis HOM05D004929 ORTHO05D006492 8.9e-164 580.5 349 80.5
Solyc02g093440.4 Solanum lycopersicum HOM05D004929 ORTHO05D006492 3.4e-163 578.6 346 80.1
CARHR075280 Cardamine hirsuta HOM05D004929 ORTHO05D006492 4.4e-163 578.2 352 77.3
PGSC0003DMG400012608 Solanum tuberosum HOM05D004929 ORTHO05D006492 4.4e-163 578.2 353 78.8
Peaxi162Scf03028g00012 Petunia axillaris HOM05D004929 ORTHO05D006492 7.5e-163 577.4 346 79.5
TWI56G0780 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 1.3e-162 576.6 347 79.8
Peaxi162Scf00080g01316 Petunia axillaris HOM05D004929 ORTHO05D005557 1.7e-162 576.2 350 78.0
Aa31LG5G10780 Aethionema arabicum HOM05D004929 ORTHO05D006492 2.2e-162 575.9 347 79.0
Migut.K01411 Erythranthe guttata HOM05D004929 ORTHO05D006492 2.2e-162 575.9 356 77.5
Peaxi162Scf00129g01650 Petunia axillaris HOM05D004929 ORTHO05D006492 2.9e-162 575.5 346 79.2
Sed0020215 Sechium edule HOM05D004929 ORTHO05D006492 2.9e-162 575.5 353 78.2
Aqoxy4G03095 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 4.9e-162 574.7 352 77.6
CANSAT64G1903 Cannabis sativa HOM05D004929 ORTHO05D006492 6.4e-162 574.3 353 79.3
BcaC01g04530 Brassica carinata HOM05D004929 ORTHO05D006492 8.3e-162 573.9 348 77.0
Sopen02g038230 Solanum pennellii HOM05D004929 ORTHO05D006492 8.3e-162 573.9 346 79.5
FAN05G4087 Fragaria x ananassa HOM05D004929 ORTHO05D006492 1.4e-161 573.2 348 80.5
THA.LOC104821096 Tarenaya hassleriana HOM05D004929 ORTHO05D006492 1.4e-161 573.2 348 78.7
C03p39500 Brassica napus HOM05D004929 ORTHO05D006492 1.9e-161 572.8 348 77.0
Hund23289 Selenicereus undatus HOM05D004929 ORTHO05D006492 1.9e-161 572.8 354 78.0
Thhalv10020980m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 2.4e-161 572.4 352 76.4
BraA03t12414Z Brassica rapa HOM05D004929 ORTHO05D006492 5.4e-161 571.2 348 76.7
FAN02G0047 Fragaria x ananassa HOM05D004929 ORTHO05D006492 9.2e-161 570.5 365 77.0
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 1.2e-160 570.1 351 76.9
BolC3t16218H Brassica oleracea HOM05D004929 ORTHO05D006492 1.6e-160 569.7 348 76.4
A03p32440 Brassica napus HOM05D004929 ORTHO05D006492 6.0e-160 567.8 348 76.4
Sp3g00410 Schrenkiella parvula HOM05D004929 ORTHO05D006492 6.0e-160 567.8 349 76.5
Carub.0003s0042 Capsella rubella HOM05D004929 ORTHO05D006492 7.8e-160 567.4 351 76.4
MSTRG.3138 Avicennia marina HOM05D004929 ORTHO05D006492 1.3e-159 566.6 349 77.7
Duzib264G0638 Durio zibethinus HOM05D004929 ORTHO05D006492 3.0e-159 565.5 381 75.1
HPP92_015407 Vanilla planifolia HOM05D004929 ORTHO05D006492 1.1e-158 563.5 347 78.4
EL10Ac6g14097 Beta vulgaris HOM05D004929 ORTHO05D006492 1.2e-157 560.1 347 76.4
Thhalv10013912m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 1.6e-157 559.7 348 74.7
CARHR198840 Cardamine hirsuta HOM05D004929 ORTHO05D006492 4.7e-157 558.1 353 74.2
MBI05_g22077_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 8.1e-157 557.4 348 78.2
AL6G25200 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 1.1e-156 557.0 347 75.8
AT5G14470 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 5.2e-156 554.7 347 75.5
arahy.Tifrunner.gnm1.ann1.FEY4ZS Arachis hypogaea HOM05D004929 ORTHO05D006492 6.8e-156 554.3 351 76.9
arahy.Tifrunner.gnm1.ann1.NF5K9F Arachis hypogaea HOM05D004929 ORTHO05D006492 6.8e-156 554.3 351 76.9
BraA10t44472Z Brassica rapa HOM05D004929 ORTHO05D006492 1.2e-155 553.5 345 74.8
Carub.0006s1265 Capsella rubella HOM05D004929 ORTHO05D006492 1.2e-155 553.5 348 75.3
HanXRQChr17g0548651 Helianthus annuus HOM05D004929 ORTHO05D006492 2.6e-155 552.4 343 77.6
Lsat_1_v5_gn_0_18301 Lactuca sativa HOM05D004929 ORTHO05D006492 2.6e-155 552.4 347 75.8
Phvul.004G004700 Phaseolus vulgaris HOM05D004929 ORTHO05D006492 2.2e-154 549.3 353 75.6
Glyma.05G002500 Glycine max HOM05D004929 ORTHO05D006492 4.9e-154 548.1 346 75.7
ECA246G1179 Erigeron canadensis HOM05D004929 ORTHO05D006492 1.1e-153 547.0 348 77.3
Lalb_Chr06g0176621 Lupinus albus HOM05D004929 ORTHO05D006492 2.4e-153 545.8 352 74.7
HanXRQChr17g0548641 Helianthus annuus HOM05D004929 ORTHO05D006492 3.2e-153 545.4 346 76.6
VMungo0464G1388 Vigna mungo HOM05D004929 ORTHO05D006492 7.8e-152 540.8 353 74.8
DCAR_021732 Daucus carota HOM05D004929 ORTHO05D006492 1.3e-151 540.0 341 76.2
TPR.G31950 Trifolium pratense HOM05D004929 ORTHO05D006492 1.3e-151 540.0 354 74.3
Medtr6g004430 Medicago truncatula HOM05D004929 ORTHO05D006492 2.3e-151 539.3 346 76.0
BcaB08g36997 Brassica carinata HOM05D004929 ORTHO05D006492 3.0e-151 538.9 350 73.1
Ah.03g137000 Amaranthus hybridus HOM05D004929 ORTHO05D006492 8.6e-151 537.3 353 72.5
Ca_04143_v3 Cicer arietinum L. HOM05D004929 ORTHO05D006492 1.2e-149 533.5 347 75.2
AUR62008872 Chenopodium quinoa HOM05D004929 ORTHO05D006492 3.1e-148 528.9 347 73.2
AUR62031837 Chenopodium quinoa HOM05D004929 ORTHO05D006492 7.6e-147 524.2 387 66.7
Lj2g0024676 Lotus japonicus HOM05D004929 ORTHO05D006492 1.7e-146 523.1 346 74.3
ATR0827G043 Amborella trichopoda HOM05D004929 ORTHO05D006492 1.9e-145 519.6 369 69.9
Os11g0217300 Oryza sativa ssp. japonica HOM05D004929 ORTHO05D006492 3.2e-145 518.8 340 73.8
Oeu018151.1 Olea europaea HOM05D004929 ORTHO05D006492 9.2e-145 517.3 347 73.8
Zm00001eb025800 Zea mays HOM05D004929 ORTHO05D006492 9.2e-145 517.3 352 71.3
BcaC04g19032 Brassica carinata HOM05D004929 ORTHO05D006492 2.7e-144 515.8 348 71.8
arahy.Tifrunner.gnm1.ann1.BJ3QP1 Arachis hypogaea HOM05D004929 ORTHO05D006492 2.5e-142 509.2 318 78.6
BcaB08g36995 Brassica carinata HOM05D004929 ORTHO05D006492 1.2e-141 506.9 354 70.3
SHI00354 Sapria himalayana HOM05D004929 ORTHO05D006492 1.4e-140 503.4 339 71.4
COL.COLO4_29172 Corchorus olitorius HOM05D004929 ORTHO05D006492 4.0e-140 501.9 353 71.1
Eucgr.I01731 Eucalyptus grandis HOM05D004929 ORTHO05D006492 1.3e-133 480.3 284 81.3
A10p24090 Brassica napus HOM05D004929 ORTHO05D006492 1.7e-130 469.9 347 65.7
Dinv33427 Davidia involucrata HOM05D004929 ORTHO05D006492 8.4e-130 467.6 271 83.0
SMO145G0043 Selaginella moellendorffii HOM05D004929 ORTHO05D006492 1.6e-128 463.4 333 67.0
Nitab4.5_0006683g0060 Nicotiana tabacum HOM05D004929 ORTHO05D006492 1.5e-126 456.8 351 65.2
SGA_v2.0_scaffold30G12409 Striga asiatica HOM05D004929 ORTHO05D006492 2.4e-124 449.5 273 78.4
Sc03g0007290 Simmondsia chinensis HOM05D004929 ORTHO05D006492 4.5e-123 445.3 268 78.4
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 1.2e-120 437.2 273 76.6
HPP92_026990 Vanilla planifolia HOM05D004929 ORTHO05D006492 3.0e-119 432.6 269 78.4
Psat1g053480 Pisum sativum HOM05D004929 ORTHO05D006492 4.0e-116 422.2 268 76.5
AagrBONN_evm.TU.Sc2ySwM_228.449 Anthoceros agrestis HOM05D000718 ORTHO05D002712 1.6e-112 410.2 319 63.9
Mapoly0023s0058 Marchantia polymorpha HOM05D004929 ORTHO05D006492 2.7e-112 409.5 347 59.7
CBR_g3618 Chara braunii HOM05D004929 ORTHO05D006492 1.6e-109 400.2 349 58.7
Atru.chr6.2430 Acer truncatum HOM05D004929 ORTHO05D006492 3.7e-109 399.1 235 81.7
SGA_v2.0_scaffold47G17516 Striga asiatica HOM05D004929 ORTHO05D006492 4.2e-105 385.6 331 61.6
ATR0681G379 Amborella trichopoda HOM05D004929 ORTHO05D006492 4.6e-104 382.1 251 74.9
SHI25478 Sapria himalayana HOM05D004929 ORTHO05D006492 2.8e-101 372.9 277 67.1
Pp3c22_9380 Physcomitrium patens HOM05D004929 ORTHO05D006492 4.1e-100 369.0 274 63.1
BolC9t59108H Brassica oleracea HOM05D004929 ORTHO05D006492 5.9e-99 365.2 356 54.2
C09p62710 Brassica napus HOM05D004929 ORTHO05D006492 2.9e-98 362.8 347 54.2
Nitab4.5_0000040g0670 Nicotiana tabacum HOM05D004929 ORTHO05D006492 3.7e-93 345.9 352 54.5
Cre02.g107600 Chlamydomonas reinhardtii HOM05D004929 ORTHO05D006492 1.1e-89 334.3 356 52.2
CDE07G0337 Ceratophyllum demersum HOM05D004929 ORTHO05D006492 1.9e-89 333.6 209 76.6
PRCOL_00005101 Prasinoderma coloniale HOM05D004929 ORTHO05D006492 1.8e-84 317.0 350 49.7
MCO09G795 Micromonas commoda HOM05D004929 ORTHO05D006492 2.5e-81 306.6 350 48.0
Nitab4.5_0001550g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 2.6e-78 296.6 235 65.5
Oeu033729.3 Olea europaea HOM05D004929 ORTHO05D006492 9.8e-70 268.1 209 67.0
BcaB08g36982 Brassica carinata HOM05D004929 ORTHO05D006492 7.0e-68 261.9 168 73.8
MBI05_g01825_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 1.5e-62 244.2 218 58.7
BolC9t59344H Brassica oleracea HOM05D004929 ORTHO05D006492 2.8e-56 223.4 195 60.0
Atru.chr6.2429 Acer truncatum HOM05D004929 ORTHO05D006492 8.6e-50 201.8 115 80.0
MSTRG.3285 Avicennia marina HOM05D004929 ORTHO05D006492 5.6e-49 199.1 131 73.3
CDE07G1161 Ceratophyllum demersum HOM05D004929 ORTHO05D043891 2.6e-38 163.7 114 67.5
A10p26090 Brassica napus HOM05D004929 ORTHO05D006492 6.4e-29 132.5 188 43.6
BcaNung06761 Brassica carinata HOM05D004929 ORTHO05D006492 2.1e-24 117.5 70 75.7
MD17G1022500 Malus domestica HOM05D004929 ORTHO05D006492 4.8e-24 116.3 68 76.5
Sopen02g038030 Solanum pennellii HOM05D004929 ORTHO05D006492 9.0e-23 112.1 68 72.1
Sp6g29550 Schrenkiella parvula HOM05D004929 ORTHO05D043891 2.4e-20 104.0 65 72.3
arahy.Tifrunner.gnm1.ann1.6CI6DX Arachis hypogaea HOM05D004929 ORTHO05D031499 1.1e-12 78.6 44 77.3
arahy.Tifrunner.gnm1.ann1.XQCE19 Arachis hypogaea HOM05D004929 ORTHO05D031499 6.0e-11 72.8 40 75.0
Glyma.19G002700 Glycine max HOM05D004929 ORTHO05D215243 5.1e-10 69.7 81 50.6
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 2.4e-07 60.8 229 27.9
CAN.G1057.11 Capsicum annuum HOM05D004929 ORTHO05D115892 6.9e-07 59.3 109 32.1
Hund27175 Selenicereus undatus HOM05D006425 ORTHO05D007312 1.5e-06 58.2 198 26.8
AUR62004524 Chenopodium quinoa HOM05D006425 ORTHO05D007312 2.0e-06 57.8 211 24.6
AUR62022731 Chenopodium quinoa HOM05D006425 ORTHO05D007312 2.0e-06 57.8 199 27.1
PSO782G0220 Papaver somniferum HOM05D006425 ORTHO05D007312 4.5e-06 56.6 219 26.9
EL10Ac1g00230 Beta vulgaris HOM05D006425 ORTHO05D007312 5.8e-06 56.2 218 24.8


User provided reference genes

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