Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G136900 Manihot esculenta HOM05D003836 ORTHO05D004556 0.0e+00 1174.8 606 100.0
Manes.17G086000 Manihot esculenta HOM05D003836 ORTHO05D004556 1.7e-279 965.7 611 82.8
Ciclev10014689m.g Citrus clementina HOM05D003836 ORTHO05D004556 3.0e-228 795.4 611 70.4
Potri.010G103400 Populus trichocarpa HOM05D003836 ORTHO05D004556 2.8e-226 788.9 615 71.2
Cfa015051 Carpinus fangiana HOM05D003836 ORTHO05D004556 4.1e-225 785.0 651 66.8
Gorai.013G030000 Gossypium raimondii HOM05D003836 ORTHO05D004556 2.5e-222 775.8 626 69.6
CiPaw.05G187900 Carya illinoinensis HOM05D003836 ORTHO05D004556 1.2e-221 773.5 651 65.9
Atru.chr7.2694 Acer truncatum HOM05D003836 ORTHO05D004556 3.0e-220 768.8 612 69.0
GSVIVG01011621001 Vitis vinifera HOM05D003836 ORTHO05D004556 7.4e-219 764.2 634 66.1
Gorai.008G170400 Gossypium raimondii HOM05D003836 ORTHO05D004556 3.7e-218 761.9 626 67.7
TWI74G0623 Tripterygium wilfordii HOM05D003836 ORTHO05D004556 4.8e-218 761.5 627 66.0
FvH4_4g33240 Fragaria vesca HOM05D003836 ORTHO05D004556 5.3e-217 758.1 619 66.2
Gohir.A13G027900 Gossypium hirsutum HOM05D003836 ORTHO05D004556 7.7e-216 754.2 562 72.1
TAR374G0617 Trochodendron aralioides HOM05D003836 ORTHO05D004556 2.2e-215 752.7 640 64.4
Sabra10G0076000 Salix brachista HOM05D003836 ORTHO05D004556 3.0e-212 742.3 636 67.3
QL03p038287 Quercus lobata HOM05D003836 ORTHO05D004556 3.9e-212 741.9 683 63.0
Prupe.1G335900 Prunus persica HOM05D003836 ORTHO05D004556 9.7e-211 737.3 612 65.5
FAN17G2261 Fragaria x ananassa HOM05D003836 ORTHO05D004556 2.8e-210 735.7 620 64.7
FAN22G0514 Fragaria x ananassa HOM05D003836 ORTHO05D004556 2.8e-210 735.7 615 65.4
RcHm_v2.0_Chr4g0442391 Rosa chinensis HOM05D003836 ORTHO05D004556 2.8e-210 735.7 613 65.1
Lj1g0024673 Lotus japonicus HOM05D003836 ORTHO05D004556 3.7e-210 735.3 624 65.2
MD16G1015700 Malus domestica HOM05D003836 ORTHO05D004556 6.3e-210 734.6 619 64.1
FAN07G2679 Fragaria x ananassa HOM05D003836 ORTHO05D004556 1.1e-209 733.8 610 65.1
FAN12G1258 Fragaria x ananassa HOM05D003836 ORTHO05D004556 5.3e-209 731.5 620 64.5
Haze_10840 Corylus avellana HOM05D003836 ORTHO05D004556 1.2e-208 730.3 651 64.1
Thecc.02G307000 Theobroma cacao HOM05D003836 ORTHO05D004556 1.2e-208 730.3 628 66.7
CANSAT78G2203 Cannabis sativa HOM05D003836 ORTHO05D004556 3.5e-208 728.8 649 61.3
CsaV3_7G022080 Cucumis sativus L. HOM05D003836 ORTHO05D004556 4.5e-208 728.4 655 63.8
Medtr3g076570 Medicago truncatula HOM05D003836 ORTHO05D004556 2.9e-207 725.7 625 63.8
Ca_16122_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 1.9e-206 723.0 653 61.4
Glyma.04G189300 Glycine max HOM05D003836 ORTHO05D004556 2.5e-206 722.6 634 63.2
Phvul.009G172600 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 9.4e-206 720.7 623 63.7
Gohir.D13G026700 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.6e-205 719.9 593 68.6
TPR.G35600 Trifolium pratense HOM05D003836 ORTHO05D004556 2.7e-205 719.2 651 61.3
Duzib251G0897 Durio zibethinus HOM05D003836 ORTHO05D004556 8.0e-205 717.6 620 66.0
Nn4g24475 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.4e-204 716.8 641 62.2
Glyma.06G176300 Glycine max HOM05D003836 ORTHO05D004556 1.8e-204 716.5 625 62.6
TAR622G1236 Trochodendron aralioides HOM05D003836 ORTHO05D004556 1.8e-204 716.5 636 61.9
ClCG11G007570 Citrullus lanatus HOM05D003836 ORTHO05D004556 7.4e-203 711.1 653 63.4
Lalb_Chr11g0070001 Lupinus albus HOM05D003836 ORTHO05D004556 1.4e-201 706.8 638 61.9
Duzib268G0198 Durio zibethinus HOM05D003836 ORTHO05D004556 7.0e-201 704.5 627 64.8
Nn3g18432 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.0e-199 700.7 642 60.9
PGR142G3191 Punica granatum HOM05D003836 ORTHO05D004556 2.9e-199 699.1 629 63.4
VMungo1309G0617 Vigna mungo HOM05D003836 ORTHO05D004556 8.5e-199 697.6 626 62.3
Migut.E00502 Erythranthe guttata HOM05D003836 ORTHO05D004556 7.2e-198 694.5 613 62.5
Sed0017171 Sechium edule HOM05D003836 ORTHO05D004556 1.6e-197 693.3 652 60.9
PSO063G7099 Papaver somniferum HOM05D003836 ORTHO05D004556 4.0e-196 688.7 622 61.6
Aqoxy6G01037 Aquilegia oxysepala HOM05D003836 ORTHO05D004556 3.7e-194 682.2 512 68.6
PSO782G5172 Papaver somniferum HOM05D003836 ORTHO05D004556 1.4e-193 680.2 614 62.1
Dinv32673 Davidia involucrata HOM05D003836 ORTHO05D004556 3.1e-193 679.1 642 60.4
Carub.0002s1445 Capsella rubella HOM05D003836 ORTHO05D004556 9.1e-193 677.6 630 60.8
Dinv02294 Davidia involucrata HOM05D003836 ORTHO05D004556 1.6e-192 676.8 462 75.3
Gohir.A12G154400 Gossypium hirsutum HOM05D003836 ORTHO05D004556 5.9e-192 674.9 564 67.2
AT1G67960 Arabidopsis thaliana HOM05D003836 ORTHO05D004556 7.7e-192 674.5 633 60.3
MELO3C013236.2 Cucumis melo HOM05D003836 ORTHO05D004556 2.2e-191 672.9 634 62.1
arahy.Tifrunner.gnm1.ann1.THT645 Arachis hypogaea HOM05D003836 ORTHO05D004556 2.9e-191 672.5 508 67.9
AL2G26960 Arabidopsis lyrata HOM05D003836 ORTHO05D004556 1.5e-190 670.2 630 60.0
arahy.Tifrunner.gnm1.ann1.FHB42U Arachis hypogaea HOM05D003836 ORTHO05D004556 1.5e-190 670.2 644 58.1
CARHR060610 Cardamine hirsuta HOM05D003836 ORTHO05D004556 1.9e-190 669.8 642 59.5
Hma1.2p1_2859F.1_g329510 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 1.9e-190 669.8 402 82.3
COL.COLO4_27608 Corchorus olitorius HOM05D003836 ORTHO05D004556 1.8e-188 663.3 558 67.2
Atru.chr11.806 Acer truncatum HOM05D003836 ORTHO05D004556 4.0e-188 662.1 396 82.8
Sp5g22940 Schrenkiella parvula HOM05D003836 ORTHO05D004556 5.2e-188 661.8 643 59.1
arahy.Tifrunner.gnm1.ann1.HCE13Z Arachis hypogaea HOM05D003836 ORTHO05D004556 9.8e-187 657.5 624 58.8
Eucgr.G02079 Eucalyptus grandis HOM05D003836 ORTHO05D004556 1.8e-185 653.3 641 60.1
Gohir.D12G157600 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.8e-185 653.3 562 66.0
Psat5g116920 Pisum sativum HOM05D003836 ORTHO05D004556 2.7e-184 649.4 606 60.6
Cc11_g06410 Coffea canephora HOM05D003836 ORTHO05D004556 7.7e-184 647.9 637 58.2
Cpa.g.sc2.157 Carica papaya HOM05D003836 ORTHO05D004556 1.3e-183 647.1 574 65.3
Lsat_1_v5_gn_3_104360 Lactuca sativa HOM05D003836 ORTHO05D004556 2.3e-183 646.4 631 58.6
Thhalv10018303m.g Eutrema salsugineum HOM05D003836 ORTHO05D004556 2.3e-180 636.3 630 58.4
A07p34480 Brassica napus HOM05D003836 ORTHO05D004556 1.1e-174 617.5 601 58.4
Aa31sc536G20 Aethionema arabicum HOM05D003836 ORTHO05D004556 1.5e-174 617.1 672 54.9
ECA246G1487 Erigeron canadensis HOM05D003836 ORTHO05D004556 1.5e-174 617.1 613 57.4
DCAR_023556 Daucus carota HOM05D003836 ORTHO05D004556 3.3e-174 615.9 615 56.1
Glyma.07G191900 Glycine max HOM05D003836 ORTHO05D004556 2.0e-171 606.7 577 59.1
EL10Ac8g19453 Beta vulgaris HOM05D003836 ORTHO05D004556 7.5e-171 604.7 664 54.7
BcaB03g15387 Brassica carinata HOM05D003836 ORTHO05D004556 1.9e-169 600.1 625 56.2
Zm00001eb216180 Zea mays HOM05D003836 ORTHO05D004556 1.9e-169 600.1 610 55.2
Ah.02g131240 Amaranthus hybridus HOM05D003836 ORTHO05D004556 3.5e-168 595.9 419 72.6
SalBow2G2298 Salvia bowleyana HOM05D003836 ORTHO05D004556 8.6e-167 591.3 648 52.5
ATR0021G013 Amborella trichopoda HOM05D003836 ORTHO05D004556 1.6e-165 587.0 649 52.2
TPR.G32436 Trifolium pratense HOM05D003836 ORTHO05D004556 2.4e-161 573.2 444 65.3
Glyma.13G184600 Glycine max HOM05D003836 ORTHO05D004556 5.8e-155 552.0 417 68.3
SGA_v2.0_scaffold23G10153 Striga asiatica HOM05D003836 ORTHO05D004556 2.1e-152 543.5 590 54.4
arahy.Tifrunner.gnm1.ann1.36Q8NS Arachis hypogaea HOM05D003836 ORTHO05D004556 2.1e-149 533.5 624 50.8
VMungo0251G2034 Vigna mungo HOM05D003836 ORTHO05D004556 5.8e-147 525.4 411 66.7
unitig_8.g4015 Utricularia gibba HOM05D003836 ORTHO05D004556 9.9e-147 524.6 615 50.7
Psat7g111040 Pisum sativum HOM05D003836 ORTHO05D004556 1.7e-146 523.9 364 71.7
BcaC08g46221 Brassica carinata HOM05D003836 ORTHO05D004556 8.4e-146 521.5 626 51.4
BolC6t39223H Brassica oleracea HOM05D003836 ORTHO05D004556 1.4e-145 520.8 577 53.0
Lj6A734G74 Lonicera japonica HOM05D003836 ORTHO05D004556 5.8e-139 498.8 617 49.9
Os03g0715400 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 6.4e-138 495.4 404 64.6
Phvul.002G223900 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 4.6e-136 489.2 487 56.9
Pp3c12_1050 Physcomitrium patens HOM05D003836 ORTHO05D004556 1.2e-131 474.6 431 55.0
arahy.Tifrunner.gnm1.ann1.6NWB5V Arachis hypogaea HOM05D003836 ORTHO05D004556 2.2e-130 470.3 557 50.1
Medtr4g090465 Medicago truncatula HOM05D003836 ORTHO05D004556 6.4e-130 468.8 362 65.7
Solyc06g051440.4 Solanum lycopersicum HOM05D003836 ORTHO05D004556 9.6e-126 454.9 290 78.3
Mapoly0019s0007 Marchantia polymorpha HOM05D003836 ORTHO05D004556 2.8e-125 453.4 622 42.6
BcaB03g15147 Brassica carinata HOM05D003836 ORTHO05D004556 3.7e-125 453.0 579 48.4
SHI04351 Sapria himalayana HOM05D003836 ORTHO05D004556 6.9e-124 448.7 354 66.1
Lalb_Chr23g0273371 Lupinus albus HOM05D003836 ORTHO05D004556 3.2e-121 439.9 467 55.7
Nitab4.5_0001516g0010 Nicotiana tabacum HOM05D003836 ORTHO05D004556 4.6e-120 436.0 755 41.2
C06p42030 Brassica napus HOM05D003836 ORTHO05D004556 9.6e-118 428.3 577 47.1
AUR62033051 Chenopodium quinoa HOM05D003836 ORTHO05D004556 1.6e-109 401.0 538 49.3
MD13G1017500 Malus domestica HOM05D003836 ORTHO05D004556 1.1e-105 388.3 411 54.3
Oeu036124.4 Olea europaea HOM05D003836 ORTHO05D004556 3.2e-105 386.7 301 67.8
arahy.Tifrunner.gnm1.ann1.0AB4R7 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.5e-102 377.9 559 45.3
AagrBONN_evm.TU.Sc2ySwM_228.1822 Anthoceros agrestis HOM05D003836 ORTHO05D004556 2.6e-94 350.5 343 53.4
MBI11_g36366_MAGBIO Magnolia biondii HOM05D003836 ORTHO05D004556 6.1e-88 329.3 397 50.4
Peaxi162Scf00825g00424 Petunia axillaris HOM05D003836 ORTHO05D004556 1.8e-87 327.8 408 51.5
Sopen06g017410 Solanum pennellii HOM05D003836 ORTHO05D004556 4.0e-87 326.6 401 50.6
SMO358G0292 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 3.3e-86 323.6 613 36.4
Sc10g0004880 Simmondsia chinensis HOM05D003836 ORTHO05D004556 4.8e-85 319.7 197 79.7
Nitab4.5_0001227g0030 Nicotiana tabacum HOM05D003836 ORTHO05D004556 1.8e-84 317.8 628 38.9
HanXRQChr15g0473551 Helianthus annuus HOM05D003836 ORTHO05D004556 1.1e-81 308.5 209 71.3
Sc10g0004870 Simmondsia chinensis HOM05D003836 ORTHO05D004556 1.5e-81 308.1 401 49.4
AUR62042201 Chenopodium quinoa HOM05D003836 ORTHO05D004556 3.5e-75 287.0 564 39.5
Lalb_Chr23g0273381 Lupinus albus HOM05D003836 ORTHO05D004556 5.0e-74 283.1 171 78.9
CSS0006660 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 1.8e-71 274.6 166 79.5
HanXRQChr15g0473541 Helianthus annuus HOM05D003836 ORTHO05D004556 9.2e-68 262.3 166 75.3
DCAR_030293 Daucus carota HOM05D003836 ORTHO05D004556 4.5e-67 260.0 360 43.6
BcaC08g46015 Brassica carinata HOM05D003836 ORTHO05D004556 8.6e-66 255.8 188 70.2
Peaxi162Scf00825g00423 Petunia axillaris HOM05D003836 ORTHO05D004556 2.5e-65 254.2 160 76.2
Hma1.2p1_1450F.1_g284160 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 5.2e-63 246.5 330 50.0
C01p04020 Brassica napus HOM05D003836 ORTHO05D004556 6.6e-58 229.6 180 62.8
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 1.4e-52 211.8 145 75.2
MD13G1017700 Malus domestica HOM05D003836 ORTHO05D004556 4.1e-52 210.3 124 79.0
Hma1.2p1_0658F.1_g197210 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 5.8e-46 189.9 331 43.2
Nn8g39028 Nelumbo nucifera HOM05D003836 ORTHO05D004556 7.5e-46 189.5 136 71.3
PRCOL_00001721 Prasinoderma coloniale HOM05D003836 ORTHO05D004556 2.4e-44 184.5 382 33.2
arahy.Tifrunner.gnm1.ann1.I9RBIQ Arachis hypogaea HOM05D003836 ORTHO05D004556 1.6e-43 181.8 178 57.9
MCO03G489 Micromonas commoda HOM05D003836 ORTHO05D004556 7.8e-43 179.5 385 32.7
Gohir.D13G133800 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.3e-42 178.7 145 66.2
Ca_18504_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 2.5e-41 174.5 165 60.0
Nn6g35150 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.4e-39 168.7 119 71.4
Nn6g35439 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.8e-39 168.3 133 66.9
CAN.G2032.2 Capsicum annuum HOM05D003836 ORTHO05D004556 9.2e-36 156.0 148 57.4
HPP92_020596 Vanilla planifolia HOM05D003836 ORTHO05D004556 1.2e-35 155.6 288 41.7
C06p38100 Brassica napus HOM05D003836 ORTHO05D004556 1.7e-34 151.8 239 40.2
BolC6t38907H Brassica oleracea HOM05D003836 ORTHO05D004556 1.7e-34 151.8 239 40.2
Hund15725 Selenicereus undatus HOM05D003836 ORTHO05D004556 2.5e-33 147.9 251 41.8
Cre02.g091000 Chlamydomonas reinhardtii HOM05D003836 ORTHO05D004556 9.9e-30 136.0 487 23.0
arahy.Tifrunner.gnm1.ann1.MA62LX Arachis hypogaea HOM05D003836 ORTHO05D004556 1.1e-28 132.5 87 74.7
arahy.Tifrunner.gnm1.ann1.ANFG2H Arachis hypogaea HOM05D003836 ORTHO05D004556 4.8e-24 117.1 92 65.2
Cpa.g.sc2.159 Carica papaya HOM05D003836 ORTHO05D004556 8.1e-24 116.3 69 79.7
Cfa025144 Carpinus fangiana HOM05D003836 ORTHO05D004556 1.7e-21 108.6 295 32.5
TPR.G24606 Trifolium pratense HOM05D003836 ORTHO05D004556 4.9e-21 107.1 69 68.1
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 1.1e-20 105.9 110 58.2
arahy.Tifrunner.gnm1.ann1.2AK3X2 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.9e-20 105.1 92 57.6
arahy.Tifrunner.gnm1.ann1.62N7D7 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.9e-20 105.1 92 57.6
arahy.Tifrunner.gnm1.ann1.6IM5NS Arachis hypogaea HOM05D003836 ORTHO05D004556 1.9e-20 105.1 92 57.6
arahy.Tifrunner.gnm1.ann1.QY8RSF Arachis hypogaea HOM05D003836 ORTHO05D004556 1.9e-20 105.1 92 57.6
RcHm_v2.0_Chr2g0114371 Rosa chinensis HOM05D003836 ORTHO05D004556 3.2e-20 104.4 95 61.1
arahy.Tifrunner.gnm1.ann1.1LH17Q Arachis hypogaea HOM05D003836 ORTHO05D004556 1.6e-19 102.1 83 61.4
arahy.Tifrunner.gnm1.ann1.XXVP91 Arachis hypogaea HOM05D003836 ORTHO05D004556 3.5e-19 100.9 85 58.8
Oeu043972.2 Olea europaea HOM05D003836 ORTHO05D004556 6.0e-19 100.1 176 39.8
Gorai.010G152700 Gossypium raimondii HOM05D003836 ORTHO05D004556 4.0e-15 87.4 54 81.5
SHI04354 Sapria himalayana HOM05D003836 ORTHO05D004556 6.9e-15 86.7 74 62.2
SEGI_35804 Sequoiadendron giganteum HOM05D003836 ORTHO05D004556 2.6e-14 84.7 67 53.7
SMO278G0031 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 4.5e-14 84.0 147 39.5
Nn6g35438 Nelumbo nucifera HOM05D003836 ORTHO05D004556 5.5e-12 77.0 51 80.4
Ca_18505_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 3.5e-11 74.3 76 50.0
arahy.Tifrunner.gnm1.ann1.X5KGN6 Arachis hypogaea HOM05D003836 ORTHO05D004556 4.6e-11 73.9 231 31.6
SMO200G0209 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 3.9e-10 70.9 81 46.9
arahy.Tifrunner.gnm1.ann1.UYUS3H Arachis hypogaea HOM05D003836 ORTHO05D019773 1.1e-09 69.3 52 69.2
CSS0003774 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 1.9e-09 68.6 214 34.6
arahy.Tifrunner.gnm1.ann1.45U5GW Arachis hypogaea HOM05D003836 ORTHO05D011406 1.6e-08 65.5 52 65.4
RcHm_v2.0_Chr4g0390701 Rosa chinensis HOM05D003836 ORTHO05D004556 4.8e-08 63.9 39 71.8
RcHm_v2.0_Chr6g0287871 Rosa chinensis HOM05D003836 ORTHO05D004556 6.2e-08 63.5 40 75.0
Zm00001eb237940 Zea mays HOM05D003836 ORTHO05D004556 6.2e-08 63.5 43 58.1
Zm00001eb410650 Zea mays HOM05D003836 ORTHO05D004556 6.2e-08 63.5 43 58.1
Zm00001eb175210 Zea mays HOM05D003836 ORTHO05D004556 1.8e-07 62.0 43 55.8
arahy.Tifrunner.gnm1.ann1.70DEUR Arachis hypogaea HOM05D000602 ORTHO05D004556 2.4e-07 61.6 39 71.8
Os03g0715332 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 1.5e-06 58.9 53 50.9


User provided reference genes

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