Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 2.6e-186 655.2 319 100.0
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 1.6e-127 459.9 322 70.8
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 1.3e-121 440.3 316 66.8
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 2.4e-120 436.0 344 62.5
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 2.4e-120 436.0 310 68.4
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 9.3e-120 434.1 319 67.7
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 1.6e-119 433.3 316 68.4
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 2.1e-119 433.0 323 66.9
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 4.6e-119 431.8 307 67.4
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 1.3e-118 430.3 312 67.3
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 2.3e-118 429.5 317 67.8
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 8.7e-118 427.6 312 67.9
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 1.9e-117 426.4 312 66.7
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 4.3e-117 425.2 317 67.2
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 6.2e-116 421.4 311 65.0
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 6.2e-116 421.4 325 65.2
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 6.2e-116 421.4 308 67.2
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.4e-115 420.2 325 64.9
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 1.4e-115 420.2 319 64.6
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 2.4e-115 419.5 316 66.5
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 2.4e-115 419.5 312 66.0
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 6.9e-115 417.9 309 64.1
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 2.0e-114 416.4 316 64.9
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 3.4e-114 415.6 312 65.4
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.7e-113 413.3 326 64.4
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 2.2e-113 412.9 316 64.6
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.8e-113 412.1 316 65.5
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.8e-113 412.1 316 65.5
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 8.4e-113 411.0 316 65.2
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 2.4e-112 409.5 312 65.4
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 2.1e-111 406.4 317 62.1
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 6.0e-111 404.8 325 62.2
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 1.7e-110 403.3 305 66.2
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 5.6e-109 398.3 292 67.1
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 3.6e-108 395.6 311 64.0
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 6.2e-108 394.8 313 61.0
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 1.8e-107 393.3 305 64.6
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 3.1e-107 392.5 309 63.1
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 4.0e-107 392.1 305 63.3
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 5.3e-107 391.7 300 64.3
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 9.0e-107 391.0 303 66.0
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 9.0e-107 391.0 309 61.8
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 2.0e-106 389.8 312 62.5
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 2.6e-106 389.4 308 61.4
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 4.5e-106 388.7 311 60.8
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 5.8e-106 388.3 304 63.5
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 7.6e-106 387.9 304 63.2
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 7.6e-106 387.9 304 63.2
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 7.6e-106 387.9 304 63.2
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 7.6e-106 387.9 304 63.2
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 2.2e-105 386.3 305 63.3
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 2.9e-105 386.0 305 62.0
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 2.9e-105 386.0 315 61.0
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 3.8e-105 385.6 305 62.0
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 6.4e-105 384.8 302 63.2
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 1.1e-104 384.0 314 61.5
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 1.9e-104 383.3 304 63.8
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 1.9e-104 383.3 308 60.4
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 3.2e-104 382.5 296 62.5
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 9.3e-104 380.9 304 62.5
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 1.2e-103 380.6 312 60.3
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 1.2e-103 380.6 388 52.8
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 3.5e-103 379.0 310 59.4
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 7.9e-103 377.9 312 59.9
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 1.0e-102 377.5 304 63.2
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 3.9e-102 375.6 302 62.6
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 8.7e-102 374.4 312 59.6
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 3.3e-101 372.5 307 61.9
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 4.8e-100 368.6 324 58.3
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 3.1e-99 365.9 314 58.3
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 6.9e-99 364.8 300 63.0
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 2.0e-98 363.2 300 63.0
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 2.0e-98 363.2 300 63.0
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 2.6e-98 362.8 297 60.9
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 2.2e-97 359.8 291 59.8
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 2.9e-97 359.4 291 59.5
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 3.5e-95 352.4 314 57.6
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 1.0e-94 350.9 325 57.5
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 1.2e-90 337.4 305 55.1
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 5.0e-89 332.0 275 62.5
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 5.0e-89 332.0 313 53.7
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 6.5e-89 331.6 327 56.3
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 3.5e-87 325.9 287 54.4
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 6.1e-87 325.1 253 64.0
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 6.7e-86 321.6 253 63.6
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 2.6e-82 309.7 210 68.1
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 6.1e-79 298.5 293 53.9
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 5.7e-77 292.0 271 55.7
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 3.7e-76 289.3 253 59.7
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 4.8e-76 288.9 294 51.0
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 1.1e-75 287.7 304 50.0
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 8.5e-73 278.1 308 51.0
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 1.0e-70 271.2 225 61.8
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 4.4e-69 265.8 212 59.0
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 8.2e-68 261.5 222 59.9
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 3.8e-65 252.7 297 46.1
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 8.8e-62 241.5 203 62.6
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.1e-61 241.1 197 62.9
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 7.5e-61 238.4 245 52.7
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 8.2e-60 235.0 383 39.2
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 8.0e-55 218.4 234 50.9
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 5.7e-53 212.2 294 43.2
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 7.5e-53 211.8 198 56.1
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 9.8e-53 211.5 198 56.1
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.7e-52 210.7 198 55.6
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.8e-52 209.9 190 56.8
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.8e-52 209.1 190 56.3
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 8.3e-52 208.4 190 55.8
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 4.2e-48 196.1 189 54.0
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 1.0e-46 191.4 105 80.0
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.6e-45 186.8 198 53.0
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 7.7e-42 175.3 299 40.1
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.0e-41 174.9 102 76.5
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 2.3e-41 173.7 102 75.5
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 5.0e-41 172.6 198 50.5
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 5.6e-40 169.1 102 74.5
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.4e-38 164.5 202 46.0
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 5.9e-34 149.1 189 44.4
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 9.5e-32 141.7 196 41.8
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.0e-29 134.0 115 58.3
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 2.6e-29 133.7 280 33.6
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.1e-27 128.3 115 56.5
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 1.9e-27 127.5 119 61.3
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.5e-26 123.2 102 61.8
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 1.5e-24 117.9 287 30.0
Nn3g18365 Nelumbo nucifera HOM05D006178 ORTHO05D007504 2.5e-24 117.1 62 79.0
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 6.8e-22 109.0 109 52.3
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 7.3e-16 89.0 87 55.2
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 7.3e-16 89.0 87 55.2
Sed0025662 Sechium edule HOM05D006178 ORTHO05D007504 3.6e-15 86.7 45 82.2
MCO05G527 Micromonas commoda HOM05D014289 ORTHO05D018957 2.8e-07 60.5 125 38.4


User provided reference genes

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