Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G112800 Manihot esculenta HOM05D005156 ORTHO05D006710 7.8e-158 560.5 291 100.0
Potri.001G254000 Populus trichocarpa HOM05D005156 ORTHO05D006710 1.5e-137 493.0 281 90.7
CiPaw.13G153000 Carya illinoinensis HOM05D005156 ORTHO05D006710 1.0e-133 480.3 275 89.1
RcHm_v2.0_Chr5g0050911 Rosa chinensis HOM05D005156 ORTHO05D006710 3.0e-133 478.8 274 89.1
TAR626G1548 Trochodendron aralioides HOM05D005156 ORTHO05D006710 1.9e-132 476.1 277 87.0
GSVIVG01037376001 Vitis vinifera HOM05D005156 ORTHO05D006710 2.5e-132 475.7 274 89.1
CSS0001612 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 5.6e-132 474.6 276 87.7
CSS0030488 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 7.4e-132 474.2 276 87.3
Cfa009832 Carpinus fangiana HOM05D005156 ORTHO05D006710 1.3e-131 473.4 274 89.1
Lalb_Chr10g0094741 Lupinus albus HOM05D005156 ORTHO05D006710 1.3e-131 473.4 274 86.9
FAN16G2156 Fragaria x ananassa HOM05D005156 ORTHO05D006710 2.8e-131 472.2 284 84.5
Hma1.2p1_1115F.1_g258845 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 1.4e-130 469.9 274 87.2
Actinidia16358 Actinidia chinensis HOM05D005156 ORTHO05D006710 1.8e-130 469.5 277 86.6
FvH4_3g28170 Fragaria vesca HOM05D005156 ORTHO05D006710 2.4e-130 469.2 274 86.9
Atru.chr3.2617 Acer truncatum HOM05D005156 ORTHO05D006710 3.1e-130 468.8 274 87.6
Ciclev10015838m.g Citrus clementina HOM05D005156 ORTHO05D006710 3.1e-130 468.8 276 85.9
MD11G1196200 Malus domestica HOM05D005156 ORTHO05D006710 1.2e-129 466.8 277 86.3
Glyma.09G002700 Glycine max HOM05D005156 ORTHO05D006710 4.5e-129 464.9 274 86.5
Lj3g0017854 Lotus japonicus HOM05D005156 ORTHO05D006710 1.7e-128 463.0 274 86.9
Eucgr.J00726 Eucalyptus grandis HOM05D005156 ORTHO05D006710 3.8e-128 461.8 278 83.8
Sc16g0011170 Simmondsia chinensis HOM05D005156 ORTHO05D006710 6.4e-128 461.1 281 83.3
CANSAT54G2883 Cannabis sativa HOM05D005156 ORTHO05D006710 1.1e-127 460.3 274 86.5
Aqoxy8s002 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 1.9e-127 459.5 274 85.8
Prupe.4G258300 Prunus persica HOM05D005156 ORTHO05D006710 2.5e-127 459.1 277 84.1
Thecc.09G243300 Theobroma cacao HOM05D005156 ORTHO05D006710 5.5e-127 458.0 272 86.0
PSO210G1653 Papaver somniferum HOM05D005156 ORTHO05D006710 3.5e-126 455.3 273 84.6
CsaV3_1G043140 Cucumis sativus L. HOM05D005156 ORTHO05D006710 7.9e-126 454.1 273 85.0
Gorai.001G136000 Gossypium raimondii HOM05D005156 ORTHO05D006710 1.8e-125 453.0 272 84.6
Cpa.g.sc84.13 Carica papaya HOM05D005156 ORTHO05D006710 3.9e-125 451.8 275 83.6
Gohir.A07G121700 Gossypium hirsutum HOM05D005156 ORTHO05D006710 5.1e-125 451.4 272 84.9
MSTRG.18451 Avicennia marina HOM05D005156 ORTHO05D006710 8.7e-125 450.7 274 83.2
Gohir.D07G126000 Gossypium hirsutum HOM05D005156 ORTHO05D006710 1.1e-124 450.3 272 84.2
PSO210G0499 Papaver somniferum HOM05D005156 ORTHO05D006710 1.5e-124 449.9 273 83.5
QL01p017825 Quercus lobata HOM05D005156 ORTHO05D006710 6.2e-123 444.5 274 84.7
TPR.G34160 Trifolium pratense HOM05D005156 ORTHO05D006710 8.2e-123 444.1 274 82.5
Migut.D00644 Erythranthe guttata HOM05D005156 ORTHO05D006710 9.0e-122 440.7 275 82.2
PGR119G1881 Punica granatum HOM05D005156 ORTHO05D006710 9.0e-122 440.7 274 81.0
Oeu001490.1 Olea europaea HOM05D005156 ORTHO05D006710 1.5e-121 439.9 274 82.1
Ah.06g194400 Amaranthus hybridus HOM05D005156 ORTHO05D006710 2.0e-121 439.5 273 81.7
Phvul.011G080400 Phaseolus vulgaris HOM05D005156 ORTHO05D006710 2.6e-121 439.1 274 80.3
Haze_23195 Corylus avellana HOM05D005156 ORTHO05D006710 3.4e-121 438.7 280 83.2
EL10Ac4g10175 Beta vulgaris HOM05D005156 ORTHO05D006710 4.9e-120 434.9 273 81.3
ECA238G2265 Erigeron canadensis HOM05D005156 ORTHO05D006710 6.5e-120 434.5 278 77.7
Sabra16G0154700 Salix brachista HOM05D005156 ORTHO05D006710 6.5e-120 434.5 291 81.4
VMungo1383G1089 Vigna mungo HOM05D005156 ORTHO05D006710 1.1e-119 433.7 281 78.6
AUR62000172 Chenopodium quinoa HOM05D005156 ORTHO05D006710 5.5e-119 431.4 273 80.2
FAN21G2369 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.2e-118 430.3 274 80.7
HPP92_001936 Vanilla planifolia HOM05D005156 ORTHO05D006710 2.7e-118 429.1 272 79.4
AL1G58170 Arabidopsis lyrata HOM05D005156 ORTHO05D006710 1.0e-117 427.2 272 79.8
THA.LOC104804468 Tarenaya hassleriana HOM05D005156 ORTHO05D006710 1.3e-117 426.8 275 79.3
arahy.Tifrunner.gnm1.ann1.KCM926 Arachis hypogaea HOM05D005156 ORTHO05D006710 1.8e-117 426.4 280 81.4
FAN11G0102 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.8e-117 426.4 274 80.3
arahy.Tifrunner.gnm1.ann1.9TL5ZW Arachis hypogaea HOM05D005156 ORTHO05D006710 3.0e-117 425.6 280 81.4
BcaB02g11155 Brassica carinata HOM05D005156 ORTHO05D006710 3.9e-117 425.2 272 79.4
BcaC05g27410 Brassica carinata HOM05D005156 ORTHO05D006710 5.1e-117 424.9 272 79.4
FAN25G0057 Fragaria x ananassa HOM05D005156 ORTHO05D006710 5.1e-117 424.9 274 79.2
Psat7g227760 Pisum sativum HOM05D005156 ORTHO05D006710 5.1e-117 424.9 274 79.2
Carub.0001s3958 Capsella rubella HOM05D005156 ORTHO05D006710 6.7e-117 424.5 272 79.0
MELO3C015153.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.5e-116 422.5 255 84.7
CDE12G0606 Ceratophyllum demersum HOM05D005156 ORTHO05D006710 3.3e-116 422.2 273 80.2
PGSC0003DMG400019760 Solanum tuberosum HOM05D005156 ORTHO05D006710 3.3e-116 422.2 278 77.3
Thhalv10011639m.g Eutrema salsugineum HOM05D005156 ORTHO05D006710 5.7e-116 421.4 272 78.7
Sed0002302 Sechium edule HOM05D005156 ORTHO05D006710 5.7e-116 421.4 272 82.0
AT1G50510 Arabidopsis thaliana HOM05D005156 ORTHO05D006710 7.4e-116 421.0 272 78.3
BcaB07g33488 Brassica carinata HOM05D005156 ORTHO05D006710 1.3e-115 420.2 272 79.0
Dinv22149 Davidia involucrata HOM05D005156 ORTHO05D006710 1.3e-115 420.2 246 88.6
BcaC08g43222 Brassica carinata HOM05D005156 ORTHO05D006710 2.2e-115 419.5 272 78.3
CARHR040540 Cardamine hirsuta HOM05D005156 ORTHO05D006710 2.2e-115 419.5 272 78.3
Nitab4.5_0002113g0190 Nicotiana tabacum HOM05D005156 ORTHO05D006710 2.2e-115 419.5 280 77.9
ATR0751G133 Amborella trichopoda HOM05D005156 ORTHO05D006710 3.7e-115 418.7 274 77.7
A05p20090 Brassica napus HOM05D005156 ORTHO05D006710 1.1e-114 417.2 274 78.5
BraA05t20917Z Brassica rapa HOM05D005156 ORTHO05D006710 1.1e-114 417.2 274 78.5
BraA06t23519Z Brassica rapa HOM05D005156 ORTHO05D006710 1.1e-114 417.2 274 78.1
Nitab4.5_0006419g0030 Nicotiana tabacum HOM05D005156 ORTHO05D006710 1.1e-114 417.2 280 77.5
unitig_90.g27461 Utricularia gibba HOM05D005156 ORTHO05D006710 1.1e-114 417.2 278 77.0
Sopen11g015730 Solanum pennellii HOM05D005156 ORTHO05D006710 2.4e-114 416.0 277 77.3
C05p33580 Brassica napus HOM05D005156 ORTHO05D006710 3.1e-114 415.6 274 78.1
Solyc11g033260.2 Solanum lycopersicum HOM05D005156 ORTHO05D006710 3.1e-114 415.6 277 77.3
Rhsim13G0216600 Rhododendron simsii HOM05D005156 ORTHO05D006710 4.1e-114 415.2 293 76.8
AUR62039839 Chenopodium quinoa HOM05D005156 ORTHO05D006710 5.3e-114 414.8 303 72.6
CAN.G1323.2 Capsicum annuum HOM05D005156 ORTHO05D006710 2.0e-113 412.9 274 77.7
Ca_12758_v3 Cicer arietinum L. HOM05D005156 ORTHO05D006710 1.3e-112 410.2 306 72.9
Cc01_g05890 Coffea canephora HOM05D005156 ORTHO05D006710 5.0e-112 408.3 254 81.5
ClCG03G012920 Citrullus lanatus HOM05D005156 ORTHO05D006710 1.1e-111 407.1 297 73.7
Peaxi162Scf00473g00218 Petunia axillaris HOM05D005156 ORTHO05D006710 1.4e-111 406.8 303 72.6
Sp1g37360 Schrenkiella parvula HOM05D005156 ORTHO05D006710 3.2e-111 405.6 272 77.2
vmacro04002 Vaccinium macrocarpon HOM05D005156 ORTHO05D006710 1.6e-110 403.3 343 67.1
Hund21990 Selenicereus undatus HOM05D005156 ORTHO05D006710 2.1e-110 402.9 287 75.6
HanXRQChr06g0183211 Helianthus annuus HOM05D005156 ORTHO05D006710 7.4e-108 394.4 248 79.0
DCAR_002091 Daucus carota HOM05D005156 ORTHO05D006710 1.3e-107 393.7 305 69.5
BolC5t32085H Brassica oleracea HOM05D005156 ORTHO05D006710 2.8e-107 392.5 308 68.5
Lsat_1_v5_gn_2_29420 Lactuca sativa HOM05D005156 ORTHO05D006710 1.4e-106 390.2 276 72.1
SHI21395 Sapria himalayana HOM05D005156 ORTHO05D006710 9.1e-106 387.5 274 73.7
A06p03060 Brassica napus HOM05D005156 ORTHO05D006710 5.9e-105 384.8 261 75.9
Lj2C655T2 Lonicera japonica HOM05D005156 ORTHO05D006710 7.7e-105 384.4 275 76.4
SMO147G0151 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 5.0e-104 381.7 272 72.4
C06p05700 Brassica napus HOM05D005156 ORTHO05D006710 1.9e-103 379.8 259 74.9
Os08g0504400 Oryza sativa ssp. japonica HOM05D005156 ORTHO05D006710 1.9e-103 379.8 253 77.1
Mapoly0048s0046 Marchantia polymorpha HOM05D005156 ORTHO05D006710 7.9e-102 374.4 271 69.7
Pp3c21_8650 Physcomitrium patens HOM05D005156 ORTHO05D006710 4.8e-99 365.2 274 68.2
Hma1.2p1_2309F.1_g319520 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 2.6e-97 359.4 210 87.1
Lj2C684T3 Lonicera japonica HOM05D005156 ORTHO05D006710 6.5e-96 354.8 238 80.3
Aa31LG10G3780 Aethionema arabicum HOM05D005156 ORTHO05D006710 1.9e-95 353.2 238 76.5
Aqoxy4G00402 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 4.2e-95 352.1 274 70.8
CBR_g12801 Chara braunii HOM05D005156 ORTHO05D006710 3.9e-93 345.5 272 66.9
AagrBONN_evm.TU.Sc2ySwM_368.760 Anthoceros agrestis HOM05D005156 ORTHO05D006710 1.1e-92 344.0 272 65.8
Zm00001eb251060 Zea mays HOM05D005156 ORTHO05D006710 3.7e-91 339.0 220 75.5
MCO15G168 Micromonas commoda HOM05D005156 ORTHO05D006710 5.5e-87 325.1 275 60.7
SGA_v2.0_scaffold29G12276 Striga asiatica HOM05D005156 ORTHO05D006710 4.8e-83 312.0 183 86.3
Cre02.g144000 Chlamydomonas reinhardtii HOM05D005156 ORTHO05D006710 6.3e-83 311.6 283 56.9
PRCOL_00003626 Prasinoderma coloniale HOM05D005156 ORTHO05D006710 3.2e-79 299.3 273 56.8
SMO273G0012 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 4.0e-77 292.4 206 72.8
MBI15_g27827_MAGBIO Magnolia biondii HOM05D005156 ORTHO05D006710 1.3e-75 287.3 167 86.2
Medtr4g031220 Medicago truncatula HOM05D005156 ORTHO05D006710 8.3e-75 284.6 166 87.3
Nn1g08054 Nelumbo nucifera HOM05D005156 ORTHO05D006710 5.4e-74 282.0 169 84.6
BcaB02g11038 Brassica carinata HOM05D005156 ORTHO05D006710 1.0e-56 224.6 141 80.1
Cfa025164 Carpinus fangiana HOM05D005156 ORTHO05D006710 1.8e-53 213.8 285 42.1
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 7.5e-52 208.4 141 77.3
Haze_26247 Corylus avellana HOM05D005156 ORTHO05D006710 2.8e-38 163.3 248 43.1
Medtr4g031235 Medicago truncatula HOM05D005156 ORTHO05D006710 3.1e-37 159.8 104 76.9
Nn1g08053 Nelumbo nucifera HOM05D005156 ORTHO05D006710 2.7e-33 146.7 85 85.9
COL.COLO4_04116 Corchorus olitorius HOM05D005156 ORTHO05D006710 2.1e-30 137.1 85 80.0
EL10Ac8g19800 Beta vulgaris HOM05D005156 ORTHO05D006710 3.6e-30 136.3 129 57.4
Oeu016690.1 Olea europaea HOM05D005156 ORTHO05D006710 8.4e-27 125.2 220 39.5
SMO147G0118 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 8.4e-27 125.2 246 38.2
SalBow6G0988 Salvia bowleyana HOM05D005156 ORTHO05D006710 2.1e-25 120.6 79 74.7
SMO164G0249 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 1.1e-21 108.2 118 56.8
EL10Ac2g04378 Beta vulgaris HOM05D005156 ORTHO05D006710 2.0e-20 104.0 99 51.5
EL10Ac3g06833 Beta vulgaris HOM05D005156 ORTHO05D006710 2.0e-20 104.0 81 59.3
MELO3C033715.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.3e-19 101.3 61 82.0
MELO3C034160.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.3e-19 101.3 62 82.3
MELO3C030656.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.2e-19 100.5 62 83.9
MELO3C034654.2 Cucumis melo HOM05D005156 ORTHO05D006710 4.9e-19 99.4 62 83.9
MELO3C030457.2 Cucumis melo HOM05D005156 ORTHO05D006710 4.6e-17 92.8 58 84.5
SMO147G0310 Selaginella moellendorffii HOM05D000066 ORTHO05D373802 6.0e-17 92.4 106 47.2
MELO3C016526.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.0e-16 90.1 55 85.5
ATR0585G005 Amborella trichopoda HOM05D005156 ORTHO05D006710 1.9e-15 87.4 64 65.6
Hma1.2p1_1115F.1_g258870 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 1.9e-10 70.9 37 86.5
Aqoxy1G04277 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 2.5e-10 70.5 38 86.8
EL10Ac2g02892 Beta vulgaris HOM05D005156 ORTHO05D039042 1.2e-09 68.2 42 76.2
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 1.0e-08 65.1 40 77.5
EL10Ac8g20129 Beta vulgaris HOM05D005156 ORTHO05D000004 1.8e-08 64.3 35 85.7
EL10Ac9g22728 Beta vulgaris HOM05D005156 ORTHO05D000004 1.8e-08 64.3 35 85.7
Rhsim05G0077000 Rhododendron simsii HOM05D003003 ORTHO05D008343 2.3e-08 63.9 39 82.1
SEGI_37101 Sequoiadendron giganteum HOM05D005156 ORTHO05D006710 3.9e-08 63.2 37 81.1
SMO147G0023 Selaginella moellendorffii HOM05D005156 ORTHO05D376049 8.7e-08 62.0 123 37.4
Rhsim07G0166700 Rhododendron simsii HOM05D005156 ORTHO05D050672 2.1e-06 57.4 69 49.3


User provided reference genes

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