Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G104600 Manihot esculenta HOM05D004177 ORTHO05D004826 2.0e-219 765.4 370 100.0
Sabra03G0136900 Salix brachista HOM05D004177 ORTHO05D004826 1.4e-196 689.5 360 91.7
Potri.003G186900 Populus trichocarpa HOM05D004177 ORTHO05D004826 2.0e-195 685.6 360 90.8
TWI09G1015 Tripterygium wilfordii HOM05D004177 ORTHO05D004826 1.0e-194 683.3 363 88.4
PGR142G0935 Punica granatum HOM05D004177 ORTHO05D004826 2.3e-194 682.2 361 89.5
Thecc.10G003500 Theobroma cacao HOM05D004177 ORTHO05D004826 6.6e-194 680.6 365 86.3
Ciclev10008698m.g Citrus clementina HOM05D004177 ORTHO05D004826 5.6e-193 677.6 357 89.9
Atru.chr7.1532 Acer truncatum HOM05D004177 ORTHO05D004826 2.1e-192 675.6 358 88.3
QL02p063435 Quercus lobata HOM05D004177 ORTHO05D004826 1.1e-191 673.3 353 90.1
Actinidia29891 Actinidia chinensis HOM05D004177 ORTHO05D004826 1.4e-191 672.9 365 87.4
Hma1.2p1_0663F.1_g198701 Hydrangea macrophylla HOM05D004177 ORTHO05D004826 4.0e-191 671.4 358 89.1
Duzib114G0142 Durio zibethinus HOM05D004177 ORTHO05D004826 8.9e-191 670.2 357 86.8
Cfa003130 Carpinus fangiana HOM05D004177 ORTHO05D004826 2.0e-190 669.1 357 88.0
MELO3C005126.2 Cucumis melo HOM05D004177 ORTHO05D004826 4.4e-190 667.9 360 86.4
Hma1.2p1_1074F.1_g254310 Hydrangea macrophylla HOM05D004177 ORTHO05D004826 5.8e-190 667.5 366 86.3
AUR62007842 Chenopodium quinoa HOM05D004177 ORTHO05D004826 9.8e-190 666.8 361 86.1
Eucgr.C00926 Eucalyptus grandis HOM05D004177 ORTHO05D004826 1.7e-189 666.0 358 88.8
THA.LOC104826863 Tarenaya hassleriana HOM05D004177 ORTHO05D004826 1.7e-189 666.0 363 86.2
AUR62003036 Chenopodium quinoa HOM05D004177 ORTHO05D004826 2.9e-189 665.2 361 86.1
Sc14g0000820 Simmondsia chinensis HOM05D004177 ORTHO05D004826 1.4e-188 662.9 368 85.9
Ah.09g228420 Amaranthus hybridus HOM05D004177 ORTHO05D004826 1.9e-188 662.5 360 85.6
THA.LOC104816571 Tarenaya hassleriana HOM05D004177 ORTHO05D004826 3.2e-188 661.8 359 86.4
Actinidia25277 Actinidia chinensis HOM05D004177 ORTHO05D004826 4.1e-188 661.4 361 85.9
ClCG01G007700 Citrullus lanatus HOM05D004177 ORTHO05D004826 4.1e-188 661.4 370 83.8
CsaV3_5G024780 Cucumis sativus L. HOM05D004177 ORTHO05D004826 9.2e-188 660.2 360 85.6
Dinv36734 Davidia involucrata HOM05D004177 ORTHO05D004826 1.2e-187 659.8 365 85.5
BcaC06g32302 Brassica carinata HOM05D004177 ORTHO05D004826 1.6e-187 659.4 360 86.1
C09p70810 Brassica napus HOM05D004177 ORTHO05D004826 1.6e-187 659.4 360 86.1
GSVIVG01008468001 Vitis vinifera HOM05D004177 ORTHO05D004826 1.6e-187 659.4 357 88.0
CiPaw.03G219400 Carya illinoinensis HOM05D004177 ORTHO05D004826 4.6e-187 657.9 351 88.0
AL6G15840 Arabidopsis lyrata HOM05D004177 ORTHO05D004826 6.0e-187 657.5 366 84.4
arahy.Tifrunner.gnm1.ann1.H1EJ8W Arachis hypogaea HOM05D004177 ORTHO05D004826 6.0e-187 657.5 351 88.6
arahy.Tifrunner.gnm1.ann1.TIR1N2 Arachis hypogaea HOM05D004177 ORTHO05D004826 6.0e-187 657.5 351 88.6
Rhsim03G0234600 Rhododendron simsii HOM05D004177 ORTHO05D004826 1.7e-186 656.0 366 85.5
Nn6g35409 Nelumbo nucifera HOM05D004177 ORTHO05D004826 2.3e-186 655.6 363 84.8
TAR636G0014 Trochodendron aralioides HOM05D004177 ORTHO05D004826 3.0e-186 655.2 361 86.1
Sp6g36980 Schrenkiella parvula HOM05D004177 ORTHO05D004826 5.1e-186 654.4 361 85.0
A10p30370 Brassica napus HOM05D004177 ORTHO05D004826 8.6e-186 653.7 366 84.7
Ca_18171_v3 Cicer arietinum L. HOM05D004177 ORTHO05D004826 1.1e-185 653.3 354 86.7
vmacro00113 Vaccinium macrocarpon HOM05D004177 ORTHO05D004826 3.3e-185 651.7 365 84.9
Gorai.011G226300 Gossypium raimondii HOM05D004177 ORTHO05D004826 4.3e-185 651.4 357 84.3
Thhalv10013870m.g Eutrema salsugineum HOM05D004177 ORTHO05D004826 5.6e-185 651.0 366 83.9
Gohir.D10G201600 Gossypium hirsutum HOM05D004177 ORTHO05D004826 5.6e-185 651.0 362 83.4
AT5G05920 Arabidopsis thaliana HOM05D004177 ORTHO05D004826 7.3e-185 650.6 365 83.3
Aa31LG11G6950 Aethionema arabicum HOM05D004177 ORTHO05D004826 1.2e-184 649.8 363 84.0
AUR62027470 Chenopodium quinoa HOM05D004177 ORTHO05D004826 2.1e-184 649.0 352 86.1
Sed0022999 Sechium edule HOM05D004177 ORTHO05D004826 2.1e-184 649.0 354 85.6
Aqoxy2G03855 Aquilegia oxysepala HOM05D004177 ORTHO05D004826 3.6e-184 648.3 361 84.8
Glyma.07G127600 Glycine max HOM05D004177 ORTHO05D004826 3.6e-184 648.3 356 86.0
CiPaw.12G022300 Carya illinoinensis HOM05D004177 ORTHO05D004826 6.2e-184 647.5 360 85.6
MD15G1202800 Malus domestica HOM05D004177 ORTHO05D004826 6.2e-184 647.5 355 85.9
VMungo0464G2175 Vigna mungo HOM05D004177 ORTHO05D004826 6.2e-184 647.5 356 86.0
Psat7g081120 Pisum sativum HOM05D004177 ORTHO05D004826 8.1e-184 647.1 356 85.4
BolC9t59847H Brassica oleracea HOM05D004177 ORTHO05D004826 2.3e-183 645.6 382 80.9
BraA10t45083Z Brassica rapa HOM05D004177 ORTHO05D004826 2.3e-183 645.6 379 81.5
Gorai.011G226400 Gossypium raimondii HOM05D004177 ORTHO05D004826 3.1e-183 645.2 357 84.0
Lsat_1_v5_gn_8_88081 Lactuca sativa HOM05D004177 ORTHO05D004826 3.1e-183 645.2 356 83.7
CANSAT11G0575 Cannabis sativa HOM05D004177 ORTHO05D004826 4.0e-183 644.8 353 86.7
Gohir.D10G201700 Gossypium hirsutum HOM05D004177 ORTHO05D004826 5.2e-183 644.4 357 84.0
Phvul.004G172700 Phaseolus vulgaris HOM05D004177 ORTHO05D004826 1.2e-182 643.3 356 85.4
Cc06_g10990 Coffea canephora HOM05D004177 ORTHO05D004826 1.5e-182 642.9 350 86.9
HanXRQChr09g0263461 Helianthus annuus HOM05D004177 ORTHO05D004826 1.5e-182 642.9 359 83.3
TPR.G38463 Trifolium pratense HOM05D004177 ORTHO05D004826 3.4e-182 641.7 356 84.8
Prupe.7G214500 Prunus persica HOM05D004177 ORTHO05D004826 7.5e-182 640.6 357 84.6
Lj1g0019759 Lotus japonicus HOM05D004177 ORTHO05D004826 2.2e-181 639.0 353 86.4
Solyc02g080800.4 Solanum lycopersicum HOM05D004177 ORTHO05D004826 1.1e-180 636.7 374 81.0
CSS0022162 Camellia sinensis var. sinensis HOM05D004177 ORTHO05D004826 1.4e-180 636.3 382 80.6
MBI04_g06223_MAGBIO Magnolia biondii HOM05D004177 ORTHO05D004826 1.9e-180 636.0 369 81.0
Sopen02g025490 Solanum pennellii HOM05D004177 ORTHO05D004826 1.9e-180 636.0 374 80.7
Gohir.A10G194600 Gossypium hirsutum HOM05D004177 ORTHO05D004826 2.4e-180 635.6 357 83.2
RcHm_v2.0_Chr2g0092611 Rosa chinensis HOM05D004177 ORTHO05D004826 3.2e-180 635.2 361 82.8
Carub.0006s0480 Capsella rubella HOM05D004177 ORTHO05D004826 7.1e-180 634.0 366 81.7
ECA233G2252 Erigeron canadensis HOM05D004177 ORTHO05D004826 2.1e-179 632.5 355 82.0
MD02G1073000 Malus domestica HOM05D004177 ORTHO05D004826 2.1e-179 632.5 349 85.7
SHI02807 Sapria himalayana HOM05D004177 ORTHO05D004826 3.5e-179 631.7 377 78.0
FvH4_1g06830 Fragaria vesca HOM05D004177 ORTHO05D004826 7.8e-179 630.6 351 83.8
Lalb_Chr24g0393931 Lupinus albus HOM05D004177 ORTHO05D004826 7.8e-179 630.6 351 83.8
SalBow6G4427 Salvia bowleyana HOM05D004177 ORTHO05D004826 7.8e-179 630.6 354 83.1
Migut.J00439 Erythranthe guttata HOM05D004177 ORTHO05D004826 1.7e-178 629.4 357 82.4
CAN.G1014.11 Capsicum annuum HOM05D004177 ORTHO05D004826 2.3e-178 629.0 374 81.3
Ca_14076_v3 Cicer arietinum L. HOM05D004177 ORTHO05D004826 1.5e-177 626.3 354 84.5
BcaB05g21688 Brassica carinata HOM05D004177 ORTHO05D004826 1.9e-177 625.9 364 81.9
MSTRG.19533 Avicennia marina HOM05D004177 ORTHO05D004826 2.5e-177 625.5 361 82.0
HanXRQChr04g0112631 Helianthus annuus HOM05D004177 ORTHO05D004826 2.5e-177 625.5 362 81.2
BolC2t06219H Brassica oleracea HOM05D004177 ORTHO05D004826 4.3e-177 624.8 366 82.2
Lsat_1_v5_gn_8_88021 Lactuca sativa HOM05D004177 ORTHO05D004826 4.3e-177 624.8 359 80.2
SGA_v2.0_scaffold62G21577 Striga asiatica HOM05D004177 ORTHO05D004826 2.1e-176 622.5 353 82.2
Oeu052128.1 Olea europaea HOM05D004177 ORTHO05D004826 4.7e-176 621.3 344 84.6
ECA236G1557 Erigeron canadensis HOM05D004177 ORTHO05D004826 1.8e-175 619.4 364 79.1
Nitab4.5_0002695g0050 Nicotiana tabacum HOM05D004177 ORTHO05D004826 2.4e-175 619.0 373 80.4
TPR.G9556 Trifolium pratense HOM05D004177 ORTHO05D004826 8.9e-175 617.1 358 82.4
PSO210G0074 Papaver somniferum HOM05D004177 ORTHO05D004826 1.2e-174 616.7 359 79.9
Nitab4.5_0007963g0020 Nicotiana tabacum HOM05D004177 ORTHO05D004826 7.6e-174 614.0 381 77.7
BraA02t04865Z Brassica rapa HOM05D004177 ORTHO05D004826 2.2e-173 612.5 371 80.1
DCAR_012005 Daucus carota HOM05D004177 ORTHO05D004826 6.4e-173 610.9 351 83.5
PSO210G7296 Papaver somniferum HOM05D004177 ORTHO05D004826 8.4e-173 610.5 357 79.3
COL.COLO4_19342 Corchorus olitorius HOM05D004177 ORTHO05D004826 2.4e-172 609.0 366 79.8
Haze_25874 Corylus avellana HOM05D004177 ORTHO05D004826 1.2e-171 606.7 377 77.2
FAN28G1160 Fragaria x ananassa HOM05D004177 ORTHO05D004826 1.2e-171 606.7 363 80.2
FAN26G2529 Fragaria x ananassa HOM05D004177 ORTHO05D004826 1.6e-171 606.3 362 80.1
EL10Ac6g14643 Beta vulgaris HOM05D004177 ORTHO05D004826 7.8e-171 604.0 358 80.4
Cpa.g.sc19.251 Carica papaya HOM05D004177 ORTHO05D004826 3.3e-169 598.6 357 82.4
Solyc02g080790.4 Solanum lycopersicum HOM05D004177 ORTHO05D004826 3.3e-169 598.6 365 78.9
Sopen02g025480 Solanum pennellii HOM05D004177 ORTHO05D004826 5.6e-169 597.8 365 78.6
HPP92_011031 Vanilla planifolia HOM05D004177 ORTHO05D004826 5.6e-169 597.8 351 81.2
unitig_27.g24734 Utricularia gibba HOM05D001806 ORTHO05D004826 9.0e-167 590.5 348 81.0
ATR0789G091 Amborella trichopoda HOM05D004177 ORTHO05D004826 7.6e-166 587.4 360 77.2
SEGI_08410 Sequoiadendron giganteum HOM05D004177 ORTHO05D004826 1.9e-164 582.8 361 75.9
PSO596G0001 Papaver somniferum HOM05D004177 ORTHO05D004826 9.3e-164 580.5 361 75.1
Os03g0740600 Oryza sativa ssp. japonica HOM05D004177 ORTHO05D004826 2.7e-163 578.9 351 78.9
AUR62031232 Chenopodium quinoa HOM05D004177 ORTHO05D004826 6.0e-163 577.8 357 77.3
HPP92_014582 Vanilla planifolia HOM05D004177 ORTHO05D004826 1.9e-161 572.8 351 75.5
HPP92_001732 Vanilla planifolia HOM05D004177 ORTHO05D004826 4.3e-161 571.6 347 76.9
Gohir.A10G194500 Gossypium hirsutum HOM05D004177 ORTHO05D004826 3.6e-160 568.5 357 75.9
Pp3c2_9490 Physcomitrium patens HOM05D004177 ORTHO05D004826 4.5e-158 561.6 358 72.3
CARHR207300 Cardamine hirsuta HOM05D004177 ORTHO05D004826 1.7e-157 559.7 303 85.8
FAN19G3030 Fragaria x ananassa HOM05D004177 ORTHO05D004826 4.9e-157 558.1 351 76.6
Zm00001eb215220 Zea mays HOM05D004177 ORTHO05D004826 1.1e-156 557.0 355 76.9
FAN23G1990 Fragaria x ananassa HOM05D004177 ORTHO05D004826 1.9e-156 556.2 351 75.8
Zm00001eb085620 Zea mays HOM05D004177 ORTHO05D004826 5.4e-156 554.7 368 74.2
SMO337G0022 Selaginella moellendorffii HOM05D004177 ORTHO05D004826 7.1e-156 554.3 353 73.1
vmacro06273 Vaccinium macrocarpon HOM05D004177 ORTHO05D004826 2.7e-155 552.4 431 65.7
FAN26G0736 Fragaria x ananassa HOM05D004177 ORTHO05D004826 1.6e-152 543.1 360 74.4
Mapoly0001s0219 Marchantia polymorpha HOM05D004177 ORTHO05D004826 1.6e-152 543.1 361 69.8
TWI12G1142 Tripterygium wilfordii HOM05D004177 ORTHO05D004826 1.8e-151 539.7 277 91.0
AagrBONN_evm.TU.Sc2ySwM_344.1392 Anthoceros agrestis HOM05D004177 ORTHO05D004826 4.0e-151 538.5 331 74.3
MELO3C025268.2 Cucumis melo HOM05D004177 ORTHO05D004826 1.6e-147 526.6 360 72.5
AagrBONN_evm.TU.Sc2ySwM_344.3440 Anthoceros agrestis HOM05D004177 ORTHO05D004826 1.0e-146 523.9 396 64.1
HPP92_016636 Vanilla planifolia HOM05D004177 ORTHO05D004826 7.1e-140 501.1 290 80.7
PRCOL_00001978 Prasinoderma coloniale HOM05D004177 ORTHO05D004826 1.6e-136 490.0 352 65.1
MCO16G096 Micromonas commoda HOM05D004177 ORTHO05D004826 8.2e-136 487.6 348 66.4
CDE04G2922 Ceratophyllum demersum HOM05D004177 ORTHO05D004826 2.7e-131 472.6 358 65.4
Peaxi162Scf00178g01719 Petunia axillaris HOM05D004177 ORTHO05D004826 2.7e-131 472.6 722 40.9
Dinv42291 Davidia involucrata HOM05D004177 ORTHO05D004826 6.1e-131 471.5 245 89.4
Cre01.g018950 Chlamydomonas reinhardtii HOM05D004177 ORTHO05D004826 5.7e-129 464.9 310 68.7
Cre08.g369800 Chlamydomonas reinhardtii HOM05D004177 ORTHO05D004826 1.1e-127 460.7 330 62.1
Sed0017389 Sechium edule HOM05D004177 ORTHO05D004826 5.7e-121 438.3 260 78.5
Haze_27186 Corylus avellana HOM05D004177 ORTHO05D004826 7.4e-113 411.4 378 54.5
Nn4g24829 Nelumbo nucifera HOM05D004177 ORTHO05D004826 1.4e-111 407.1 239 79.9
Os09g0421100 Oryza sativa ssp. japonica HOM05D004177 ORTHO05D004826 4.7e-107 392.1 331 61.6
AagrBONN_evm.TU.Sc2ySwM_362.473 Anthoceros agrestis HOM05D004177 ORTHO05D004826 1.8e-98 363.6 357 54.9
SGA_v2.0_scaffold439G51649 Striga asiatica HOM05D004177 ORTHO05D004826 1.8e-98 363.6 219 77.6
CBR_g31495 Chara braunii HOM05D004177 ORTHO05D004826 6.3e-96 355.1 251 64.5
SGA_v2.0_scaffold439G51638 Striga asiatica HOM05D004177 ORTHO05D004826 3.3e-84 316.2 202 74.3
Hund18418 Selenicereus undatus HOM05D004177 ORTHO05D004826 1.4e-82 310.8 290 57.6
CAN.G744.9 Capsicum annuum HOM05D004177 ORTHO05D004826 7.8e-54 215.3 142 76.1
HanXRQChr04g0126441 Helianthus annuus HOM05D004177 ORTHO05D004826 7.1e-47 192.2 100 91.0
HanXRQChr13g0409461 Helianthus annuus HOM05D004177 ORTHO05D004826 1.2e-46 191.4 126 76.2
Oeu062208.1 Olea europaea HOM05D004177 ORTHO05D004826 1.2e-46 191.4 127 74.8
Oeu062213.1 Olea europaea HOM05D004177 ORTHO05D004826 2.7e-46 190.3 127 74.8
Oeu062209.1 Olea europaea HOM05D004177 ORTHO05D004826 4.6e-46 189.5 127 74.8
Hund18419 Selenicereus undatus HOM05D004177 ORTHO05D004826 1.3e-45 188.0 114 78.9
Oeu062211.1 Olea europaea HOM05D004177 ORTHO05D004826 1.3e-43 181.4 126 71.4
Actinidia03786 Actinidia chinensis HOM05D004177 ORTHO05D004826 2.1e-43 180.6 103 85.4
AagrBONN_evm.TU.Sc2ySwM_117.1724 Anthoceros agrestis HOM05D004177 ORTHO05D004826 6.2e-43 179.1 170 53.5
C02p02540 Brassica napus HOM05D001260 ORTHO05D002424 1.4e-39 167.9 126 68.3
HPP92_016662 Vanilla planifolia HOM05D004177 ORTHO05D004826 9.3e-39 165.2 98 76.5
HPP92_016663 Vanilla planifolia HOM05D004177 ORTHO05D004826 6.9e-34 149.1 109 66.1
Aa31sc206G30 Aethionema arabicum HOM05D005780 ORTHO05D004826 1.2e-33 148.3 134 56.7
Oeu039826.4 Olea europaea HOM05D002851 ORTHO05D003084 7.6e-25 119.0 69 79.7
Oeu056107.1 Olea europaea HOM05D004177 ORTHO05D004826 2.9e-24 117.1 75 76.0
Actinidia39745 Actinidia chinensis HOM05D004177 ORTHO05D004826 8.4e-24 115.5 68 77.9
RcHm_v2.0_Chr6g0296851 Rosa chinensis HOM05D004177 ORTHO05D004826 1.4e-23 114.8 68 80.9
AUR62030112 Chenopodium quinoa HOM05D004177 ORTHO05D004826 2.5e-20 104.0 60 83.3
CDE02G3953 Ceratophyllum demersum HOM05D004177 ORTHO05D004826 9.7e-20 102.1 65 72.3
Peaxi162Scf00287g00176 Petunia axillaris HOM05D004177 ORTHO05D004826 1.7e-16 91.3 84 54.8
Nn4g24830 Nelumbo nucifera HOM05D004177 ORTHO05D004826 5.0e-16 89.7 131 43.5
Pp3c1_32420 Physcomitrium patens HOM05D004177 ORTHO05D004826 1.1e-12 78.6 49 71.4
HanXRQChr13g0409471 Helianthus annuus HOM05D004177 ORTHO05D004826 3.3e-12 77.0 62 61.3
Medtr8g079080 Medicago truncatula HOM05D004177 ORTHO05D004826 6.5e-08 62.8 41 73.2
VMungo0647G1164 Vigna mungo HOM05D004177 ORTHO05D004826 5.5e-07 59.7 68 54.4


User provided reference genes

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