Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G074502 Manihot esculenta HOM05D005148 ORTHO05D006218 2.1e-209 732.3 406 100.0
Aqoxy1G03309 Aquilegia oxysepala HOM05D005148 ORTHO05D006218 1.6e-60 237.7 219 60.3
Aqoxy3G00120 Aquilegia oxysepala HOM05D005148 ORTHO05D006218 3.6e-60 236.5 219 59.8
CSS0036538 Camellia sinensis var. sinensis HOM05D005148 ORTHO05D006218 6.1e-60 235.7 207 61.4
Duzib268G1307 Durio zibethinus HOM05D005148 ORTHO05D006218 1.4e-59 234.6 293 51.5
Duzib213G0030 Durio zibethinus HOM05D005148 ORTHO05D006218 4.0e-59 233.0 266 53.4
Sed0006852 Sechium edule HOM05D005148 ORTHO05D006218 7.5e-58 228.8 214 60.3
Rhsim04G0000500 Rhododendron simsii HOM05D005148 ORTHO05D006218 1.3e-57 228.0 205 61.5
Gohir.A13G139300 Gossypium hirsutum HOM05D005148 ORTHO05D006218 2.9e-57 226.9 280 51.1
QL06p002269 Quercus lobata HOM05D005148 ORTHO05D006218 1.9e-56 224.2 202 61.9
Thecc.07G044600 Theobroma cacao HOM05D005148 ORTHO05D006218 1.9e-56 224.2 198 63.6
Prupe.4G208000 Prunus persica HOM05D005148 ORTHO05D006218 4.1e-56 223.0 207 58.9
PGSC0003DMG400014426 Solanum tuberosum HOM05D005148 ORTHO05D006218 5.4e-56 222.6 210 58.6
TAR626G1940 Trochodendron aralioides HOM05D005148 ORTHO05D006218 7.0e-56 222.2 211 60.2
MD03G1208700 Malus domestica HOM05D005148 ORTHO05D006218 3.5e-55 219.9 207 58.0
Nn1g07082 Nelumbo nucifera HOM05D005148 ORTHO05D006218 3.5e-55 219.9 211 59.2
Gorai.013G161200 Gossypium raimondii HOM05D005148 ORTHO05D006218 4.6e-55 219.5 281 49.5
Nitab4.5_0005048g0010 Nicotiana tabacum HOM05D005148 ORTHO05D006218 7.8e-55 218.8 223 54.7
Sopen10g002340 Solanum pennellii HOM05D005148 ORTHO05D006218 7.8e-55 218.8 200 59.0
MD11G1223400 Malus domestica HOM05D005148 ORTHO05D006218 1.0e-54 218.4 207 58.0
CiPaw.11G186500 Carya illinoinensis HOM05D005148 ORTHO05D006218 1.7e-54 217.6 187 65.2
Atru.chr2.3757 Acer truncatum HOM05D005148 ORTHO05D006218 2.3e-54 217.2 206 59.2
Ciclev10008061m.g Citrus clementina HOM05D005148 ORTHO05D006218 2.3e-54 217.2 206 59.2
Manes.03G127500 Manihot esculenta HOM05D005148 ORTHO05D006218 2.3e-54 217.2 122 88.5
Atru.chr2.3744 Acer truncatum HOM05D005148 ORTHO05D006218 3.0e-54 216.9 206 59.2
Gohir.D13G144100 Gossypium hirsutum HOM05D005148 ORTHO05D006218 3.0e-54 216.9 282 48.9
Nn1g03595 Nelumbo nucifera HOM05D005148 ORTHO05D006218 5.0e-54 216.1 210 58.6
arahy.Tifrunner.gnm1.ann1.ICWX02 Arachis hypogaea HOM05D005148 ORTHO05D006218 8.6e-54 215.3 128 81.2
arahy.Tifrunner.gnm1.ann1.XKJ78D Arachis hypogaea HOM05D005148 ORTHO05D006218 8.6e-54 215.3 128 81.2
CsaV3_3G023250 Cucumis sativus L. HOM05D005148 ORTHO05D006218 8.6e-54 215.3 219 58.0
Hma1.2p1_0938F.1_g239180 Hydrangea macrophylla HOM05D005148 ORTHO05D006218 8.6e-54 215.3 184 63.0
QL08p012200 Quercus lobata HOM05D005148 ORTHO05D006218 8.6e-54 215.3 127 82.7
CAN.G1781.10 Capsicum annuum HOM05D005148 ORTHO05D006218 1.1e-53 214.9 288 50.7
Eucgr.F00968 Eucalyptus grandis HOM05D005148 ORTHO05D006218 1.5e-53 214.5 193 61.1
Glyma.09G101200 Glycine max HOM05D005148 ORTHO05D006218 1.5e-53 214.5 183 63.9
QL03p062207 Quercus lobata HOM05D005148 ORTHO05D006218 3.3e-53 213.4 127 81.9
QL03p062820 Quercus lobata HOM05D005148 ORTHO05D006218 3.3e-53 213.4 127 81.9
Lalb_Chr20g0114191 Lupinus albus HOM05D005148 ORTHO05D006218 5.6e-53 212.6 128 81.2
Ca_14709_v3 Cicer arietinum L. HOM05D005148 ORTHO05D006218 7.3e-53 212.2 129 79.8
Sc03g0008800 Simmondsia chinensis HOM05D005148 ORTHO05D006218 7.3e-53 212.2 127 80.3
Dinv40732 Davidia involucrata HOM05D005148 ORTHO05D006218 9.5e-53 211.8 191 60.2
Solyc10g006390.3 Solanum lycopersicum HOM05D005148 ORTHO05D006218 1.2e-52 211.5 198 58.1
VMungo0540G1829 Vigna mungo HOM05D005148 ORTHO05D006218 1.2e-52 211.5 128 80.5
Migut.H01845 Erythranthe guttata HOM05D005148 ORTHO05D006218 1.6e-52 211.1 237 53.2
HanXRQChr08g0235221 Helianthus annuus HOM05D005148 ORTHO05D006218 2.8e-52 210.3 127 81.1
CANSAT54G0232 Cannabis sativa HOM05D005148 ORTHO05D006218 4.7e-52 209.5 235 51.1
Glyma.18G102900 Glycine max HOM05D005148 ORTHO05D006218 6.2e-52 209.1 128 80.5
Psat5g183400 Pisum sativum HOM05D005148 ORTHO05D006218 6.2e-52 209.1 129 77.5
Nitab4.5_0001393g0210 Nicotiana tabacum HOM05D005148 ORTHO05D006218 1.1e-51 208.4 129 77.5
GSVIVG01030604001 Vitis vinifera HOM05D005148 ORTHO05D006218 1.4e-51 208.0 125 80.0
Dinv22285 Davidia involucrata HOM05D005148 ORTHO05D006218 1.8e-51 207.6 289 47.8
Potri.001G420400 Populus trichocarpa HOM05D005148 ORTHO05D006218 1.8e-51 207.6 124 83.1
Cpa.g.sc97.43 Carica papaya HOM05D005148 ORTHO05D006218 2.3e-51 207.2 128 80.5
PGR042G3618 Punica granatum HOM05D005148 ORTHO05D006218 4.0e-51 206.5 128 77.3
Cfa020393 Carpinus fangiana HOM05D001748 ORTHO05D001759 5.2e-51 206.1 191 60.2
Lj6g0026690 Lotus japonicus HOM05D005148 ORTHO05D006218 8.9e-51 205.3 126 79.4
Phvul.006G037500 Phaseolus vulgaris HOM05D005148 ORTHO05D006218 8.9e-51 205.3 125 80.0
TWI38G1498 Tripterygium wilfordii HOM05D005148 ORTHO05D006218 8.9e-51 205.3 224 54.5
Atru.chr2.3269 Acer truncatum HOM05D005148 ORTHO05D006218 1.2e-50 204.9 127 78.7
ECA246G0930 Erigeron canadensis HOM05D005148 ORTHO05D006218 1.2e-50 204.9 127 78.7
Medtr3g049440 Medicago truncatula HOM05D005148 ORTHO05D006218 1.5e-50 204.5 129 75.2
ATR0752G127 Amborella trichopoda HOM05D005148 ORTHO05D006218 2.0e-50 204.1 213 56.3
SGA_v2.0_scaffold115G32129 Striga asiatica HOM05D005148 ORTHO05D006218 2.6e-50 203.8 127 77.2
Ah.04g165650 Amaranthus hybridus HOM05D001748 ORTHO05D001759 4.4e-50 203.0 127 77.2
Lsat_1_v5_gn_5_13800 Lactuca sativa HOM05D005148 ORTHO05D006218 4.4e-50 203.0 126 78.6
MSTRG.12962 Avicennia marina HOM05D005148 ORTHO05D006218 5.8e-50 202.6 128 78.1
COL.COLO4_09623 Corchorus olitorius HOM05D005148 ORTHO05D006218 5.8e-50 202.6 128 80.5
Cc05_g13470 Coffea canephora HOM05D005148 ORTHO05D006218 2.9e-49 200.3 127 76.4
AUR62008441 Chenopodium quinoa HOM05D005148 ORTHO05D006218 4.9e-49 199.5 127 74.0
TPR.G13552 Trifolium pratense HOM05D005148 ORTHO05D006218 8.3e-49 198.7 119 80.7
RcHm_v2.0_Chr5g0037921 Rosa chinensis HOM05D005148 ORTHO05D006218 1.9e-48 197.6 212 51.9
FAN16G3277 Fragaria x ananassa HOM05D005148 ORTHO05D006218 7.0e-48 195.7 207 54.6
FAN21G2996 Fragaria x ananassa HOM05D005148 ORTHO05D006218 9.2e-48 195.3 207 54.1
FvH4_3g22101 Fragaria vesca HOM05D005148 ORTHO05D006218 1.2e-47 194.9 207 54.1
EL10Ac4g07904 Beta vulgaris HOM05D005148 ORTHO05D006218 6.0e-47 192.6 128 71.1
CDE05G0897 Ceratophyllum demersum HOM05D005148 ORTHO05D006218 7.8e-47 192.2 212 54.2
SEGI_03914 Sequoiadendron giganteum HOM05D005148 ORTHO05D006218 1.3e-46 191.4 211 54.5
CARHR096320 Cardamine hirsuta HOM05D005148 ORTHO05D006218 1.7e-46 191.0 197 52.8
RcHm_v2.0_Chr4g0405041 Rosa chinensis HOM05D005148 ORTHO05D006218 1.7e-46 191.0 210 51.9
Sp3g18560 Schrenkiella parvula HOM05D005148 ORTHO05D006218 1.7e-46 191.0 183 55.7
PSO541G0017 Papaver somniferum HOM05D005148 ORTHO05D006218 6.6e-46 189.1 163 65.6
AUR62021649 Chenopodium quinoa HOM05D005148 ORTHO05D006218 1.1e-45 188.3 142 66.2
EL10Ac5g11049 Beta vulgaris HOM05D005148 ORTHO05D006218 1.9e-45 187.6 145 64.8
BcaB04g19113 Brassica carinata HOM05D005148 ORTHO05D006218 3.3e-45 186.8 210 52.9
HPP92_019925 Vanilla planifolia HOM05D005148 ORTHO05D006218 3.3e-45 186.8 300 45.0
A03p41800 Brassica napus HOM05D005148 ORTHO05D006218 4.3e-45 186.4 186 54.8
PSO675G4432 Papaver somniferum HOM05D005148 ORTHO05D006218 4.3e-45 186.4 126 76.2
Carub.0003s2052 Capsella rubella HOM05D005148 ORTHO05D006218 7.3e-45 185.7 186 54.3
Hund14204 Selenicereus undatus HOM05D005148 ORTHO05D006218 7.3e-45 185.7 138 68.8
Haze_06035 Corylus avellana HOM05D001748 ORTHO05D006218 9.5e-45 185.3 244 50.0
AT3G20550 Arabidopsis thaliana HOM05D005148 ORTHO05D006218 1.2e-44 184.9 127 69.3
C03p51180 Brassica napus HOM05D005148 ORTHO05D006218 1.2e-44 184.9 186 54.8
BraA03t13333Z Brassica rapa HOM05D005148 ORTHO05D006218 1.2e-44 184.9 186 53.2
CDE02G2943 Ceratophyllum demersum HOM05D005148 ORTHO05D006218 1.6e-44 184.5 220 50.9
BcaC01g03550 Brassica carinata HOM05D005148 ORTHO05D006218 2.1e-44 184.1 184 53.8
BolC3t17407H Brassica oleracea HOM05D005148 ORTHO05D006218 2.1e-44 184.1 184 53.8
AL3G34380 Arabidopsis lyrata HOM05D005148 ORTHO05D006218 4.7e-44 183.0 206 52.4
Zm00001eb286040 Zea mays HOM05D005148 ORTHO05D006218 1.1e-43 181.8 189 54.0
Medtr5g081620 Medicago truncatula HOM05D005148 ORTHO05D006218 3.4e-42 176.8 103 83.5
Os05g0545600 Oryza sativa ssp. japonica HOM05D005148 ORTHO05D006218 4.4e-42 176.4 125 69.6
Potri.011G136102 Populus trichocarpa HOM05D005148 ORTHO05D006218 1.7e-41 174.5 108 79.6
Aqoxy5G02091 Aquilegia oxysepala HOM05D005148 ORTHO05D006218 2.9e-41 173.7 135 68.1
DCAR_019897 Daucus carota HOM05D005148 ORTHO05D006218 8.3e-41 172.2 105 79.0
Aa31LG8G7350 Aethionema arabicum HOM05D005148 ORTHO05D006218 1.1e-40 171.8 202 48.5
Pp3c19_14080 Physcomitrium patens HOM05D005148 ORTHO05D006218 1.9e-40 171.0 126 66.7
CBR_g38419 Chara braunii HOM05D005148 ORTHO05D006218 2.4e-40 170.6 125 68.0
Mapoly0068s0031 Marchantia polymorpha HOM05D005148 ORTHO05D006218 2.4e-40 170.6 126 67.5
AagrBONN_evm.TU.Sc2ySwM_362.1748 Anthoceros agrestis HOM05D005148 ORTHO05D006218 3.5e-39 166.8 128 64.1
FAN05G2630 Fragaria x ananassa HOM05D005148 ORTHO05D006218 8.1e-36 155.6 113 65.5
FAN09G4771 Fragaria x ananassa HOM05D005148 ORTHO05D006218 5.2e-35 152.9 113 63.7
Oeu007601.1 Olea europaea HOM05D005148 ORTHO05D006218 2.0e-34 151.0 282 39.0
FAN14G1203 Fragaria x ananassa HOM05D005148 ORTHO05D006218 2.6e-34 150.6 113 61.9
FvH4_6g43590 Fragaria vesca HOM05D005148 ORTHO05D006218 3.4e-34 150.2 113 61.9
SMO367G0870 Selaginella moellendorffii HOM05D005148 ORTHO05D006218 2.9e-33 147.1 108 64.8
Peaxi162Scf00032g02417 Petunia axillaris HOM05D005148 ORTHO05D006218 9.6e-29 132.1 125 56.0
Rhsim04G0001600 Rhododendron simsii HOM05D005148 ORTHO05D006218 9.6e-29 132.1 206 45.1
Actinidia10720 Actinidia chinensis HOM05D005148 ORTHO05D006218 1.2e-26 125.2 70 80.0
ClCG05G014480 Citrullus lanatus HOM05D005148 ORTHO05D006218 1.5e-26 124.8 238 39.9
MCO09G834 Micromonas commoda HOM05D005148 ORTHO05D006218 1.3e-25 121.7 110 54.5
Haze_09643 Corylus avellana HOM05D005148 ORTHO05D006218 3.8e-25 120.2 137 54.0
FAN11G3177 Fragaria x ananassa HOM05D005148 ORTHO05D006218 6.4e-25 119.4 212 39.6
MELO3C018081.2 Cucumis melo HOM05D005148 ORTHO05D006218 5.4e-24 116.3 72 80.6
Cre09.g390430 Chlamydomonas reinhardtii HOM05D005148 ORTHO05D006218 2.7e-23 114.0 109 57.8
vmacro09737 Vaccinium macrocarpon HOM05D005148 ORTHO05D006218 3.0e-22 110.5 76 73.7
unitig_22.g5751 Utricularia gibba HOM05D005148 ORTHO05D006218 1.1e-21 108.6 127 50.4
MELO3C030736.2 Cucumis melo HOM05D005148 ORTHO05D006218 2.5e-21 107.5 55 90.9
Haze_09642 Corylus avellana HOM05D005148 ORTHO05D006218 2.1e-20 104.4 55 87.3
PRCOL_00003554 Prasinoderma coloniale HOM05D005148 ORTHO05D006218 2.8e-20 104.0 91 58.2
Thhalv10011119m.g Eutrema salsugineum HOM05D005148 ORTHO05D006218 2.2e-17 94.4 55 74.5
Thhalv10024125m.g Eutrema salsugineum HOM05D005148 ORTHO05D006218 2.2e-17 94.4 55 74.5
Sabra16G0285400 Salix brachista HOM05D005148 ORTHO05D006218 2.4e-16 90.9 125 49.6
SalBow7G4088 Salvia bowleyana HOM05D005148 ORTHO05D006218 6.0e-15 86.3 196 33.2
Cfa025954 Carpinus fangiana HOM05D005148 ORTHO05D006218 1.0e-14 85.5 112 43.8
AT2G24410 Arabidopsis thaliana HOM05D005148 ORTHO05D006218 3.9e-14 83.6 65 63.1
TPR.G40522 Trifolium pratense HOM05D005148 ORTHO05D006218 3.3e-13 80.5 47 80.9
TPR.G13540 Trifolium pratense HOM05D005148 ORTHO05D006218 5.6e-13 79.7 47 80.9
MD06G1125500 Malus domestica HOM05D005148 ORTHO05D006218 1.8e-11 74.7 100 41.0
C01p18700 Brassica napus HOM05D005148 ORTHO05D006218 4.0e-11 73.6 52 65.4
Actinidia10719 Actinidia chinensis HOM05D005148 ORTHO05D006218 5.5e-08 63.2 120 42.5
RcHm_v2.0_Chr2g0160171 Rosa chinensis HOM05D005148 ORTHO05D006218 2.7e-07 60.8 68 48.5
Lsat_1_v5_gn_5_38280 Lactuca sativa HOM05D005148 ORTHO05D006218 5.1e-06 56.6 45 62.2
FvH4_6g18040 Fragaria vesca HOM05D000874 ORTHO05D001049 6.7e-06 56.2 119 37.0


User provided reference genes

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