Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G073900 Manihot esculenta HOM05D005249 ORTHO05D006457 1.1e-95 353.2 173 100.0
Manes.03G127000 Manihot esculenta HOM05D005249 ORTHO05D006457 2.1e-81 305.8 173 86.7
Sabra16G0285800 Salix brachista HOM05D005249 ORTHO05D006457 4.3e-79 298.1 173 86.1
Potri.001G420900 Populus trichocarpa HOM05D005249 ORTHO05D006457 2.1e-78 295.8 173 84.4
Haze_09646 Corylus avellana HOM05D005249 ORTHO05D006457 6.2e-78 294.3 174 83.3
Cfa020386 Carpinus fangiana HOM05D005249 ORTHO05D006457 1.1e-77 293.5 174 83.3
QL08p011891 Quercus lobata HOM05D005249 ORTHO05D006457 4.4e-76 288.1 173 82.1
QL08p012062 Quercus lobata HOM05D005249 ORTHO05D006457 4.4e-76 288.1 173 82.1
COL.COLO4_09631 Corchorus olitorius HOM05D005249 ORTHO05D006457 1.7e-75 286.2 173 82.1
Gohir.D01G064800 Gossypium hirsutum HOM05D005249 ORTHO05D006457 6.4e-75 284.3 174 83.3
Gorai.002G085700 Gossypium raimondii HOM05D005249 ORTHO05D006457 6.4e-75 284.3 174 83.3
Thecc.07G044000 Theobroma cacao HOM05D005249 ORTHO05D006457 4.2e-74 281.6 174 80.5
Gohir.A01G077300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 7.1e-74 280.8 174 82.8
CiPaw.11G187100 Carya illinoinensis HOM05D005249 ORTHO05D006457 3.9e-72 275.0 174 79.9
Ciclev10009689m.g Citrus clementina HOM05D005249 ORTHO05D006457 5.1e-72 274.6 174 80.5
Duzib213G0461 Durio zibethinus HOM05D005249 ORTHO05D006457 8.7e-72 273.9 174 80.5
TWI38G0945 Tripterygium wilfordii HOM05D005249 ORTHO05D006457 7.3e-71 270.8 174 79.3
Eucgr.F03446 Eucalyptus grandis HOM05D005249 ORTHO05D006457 1.3e-70 270.0 176 77.3
Gohir.D05G366500 Gossypium hirsutum HOM05D005249 ORTHO05D006457 4.8e-70 268.1 175 79.4
Cpa.g.sc97.36 Carica papaya HOM05D005249 ORTHO05D006457 6.2e-70 267.7 174 77.6
FvH4_3g22190 Fragaria vesca HOM05D005249 ORTHO05D006457 6.2e-70 267.7 176 77.8
TAR626G0063 Trochodendron aralioides HOM05D005249 ORTHO05D006457 4.0e-69 265.0 183 77.0
GSVIVG01002001001 Vitis vinifera HOM05D005249 ORTHO05D006457 4.0e-69 265.0 174 77.6
Prupe.4G209000 Prunus persica HOM05D005249 ORTHO05D006457 5.3e-69 264.6 174 75.9
Dinv22281 Davidia involucrata HOM05D005249 ORTHO05D006457 1.5e-68 263.1 181 74.6
RcHm_v2.0_Chr5g0038151 Rosa chinensis HOM05D005249 ORTHO05D006457 2.0e-68 262.7 176 76.7
Hma1.2p1_1271F.1_g271820 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 3.4e-68 261.9 180 75.0
Hma1.2p1_1609F.1_g293423 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 3.4e-68 261.9 180 75.0
VMungo0540G0590 Vigna mungo HOM05D005249 ORTHO05D006457 3.8e-67 258.5 178 75.3
TAR624G0120 Trochodendron aralioides HOM05D005249 ORTHO05D006457 6.4e-67 257.7 179 77.1
PGR031G1044 Punica granatum HOM05D005249 ORTHO05D006457 4.2e-66 255.0 176 76.1
Lalb_Chr15g0080371 Lupinus albus HOM05D005249 ORTHO05D006457 5.4e-66 254.6 176 75.6
MD03G1207700 Malus domestica HOM05D005249 ORTHO05D006457 9.3e-66 253.8 176 76.1
Phvul.006G038600 Phaseolus vulgaris HOM05D005249 ORTHO05D006457 9.3e-66 253.8 174 73.6
CSS0021065 Camellia sinensis var. sinensis HOM05D005249 ORTHO05D006457 1.6e-65 253.1 182 73.1
Gohir.A04G019300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 2.1e-65 252.7 155 82.6
arahy.Tifrunner.gnm1.ann1.I048YJ Arachis hypogaea HOM05D005249 ORTHO05D006457 2.7e-65 252.3 182 73.1
Aqoxy1G03622 Aquilegia oxysepala HOM05D005249 ORTHO05D006457 4.6e-65 251.5 174 74.1
Lj8A167T50 Lonicera japonica HOM05D005249 ORTHO05D006457 6.0e-65 251.1 181 72.4
arahy.Tifrunner.gnm1.ann1.EK5LIC Arachis hypogaea HOM05D005249 ORTHO05D006457 1.0e-64 250.4 185 71.4
CANSAT21G2135 Cannabis sativa HOM05D005249 ORTHO05D006457 2.3e-64 249.2 180 75.0
Ca_08298_v3 Cicer arietinum L. HOM05D005249 ORTHO05D006457 3.9e-64 248.4 178 74.7
Lj6g0004310 Lotus japonicus HOM05D005249 ORTHO05D006457 1.1e-63 246.9 176 72.7
Gorai.009G425200 Gossypium raimondii HOM05D005249 ORTHO05D006457 1.5e-63 246.5 215 64.2
THA.LOC104798778 Tarenaya hassleriana HOM05D005249 ORTHO05D006457 1.5e-63 246.5 149 81.9
Glyma.08G312800 Glycine max HOM05D005249 ORTHO05D006457 3.3e-63 245.4 182 70.9
Nn1g07102 Nelumbo nucifera HOM05D005249 ORTHO05D006457 9.6e-63 243.8 180 70.0
A05p19870 Brassica napus HOM05D005249 ORTHO05D006457 1.6e-62 243.0 153 79.7
BraA05t20892Z Brassica rapa HOM05D005249 ORTHO05D006457 1.6e-62 243.0 153 79.7
Psat5g216840 Pisum sativum HOM05D005249 ORTHO05D006457 2.1e-62 242.7 177 72.3
ClCG10G005560 Citrullus lanatus HOM05D005249 ORTHO05D006457 2.8e-62 242.3 174 73.6
Glyma.18G102100 Glycine max HOM05D005249 ORTHO05D006457 3.7e-62 241.9 179 72.1
Cc05_g13500 Coffea canephora HOM05D005249 ORTHO05D006457 4.8e-62 241.5 189 68.8
Aa31LG10G3330 Aethionema arabicum HOM05D005249 ORTHO05D006457 6.2e-62 241.1 164 74.4
A06p02830 Brassica napus HOM05D005249 ORTHO05D006457 6.2e-62 241.1 162 74.7
BraA06t23490Z Brassica rapa HOM05D005249 ORTHO05D006457 6.2e-62 241.1 162 74.7
BcaC08g43263 Brassica carinata HOM05D005249 ORTHO05D006457 1.1e-61 240.4 163 75.5
C06p06070 Brassica napus HOM05D005249 ORTHO05D006457 1.1e-61 240.4 163 75.5
BolC6t35720H Brassica oleracea HOM05D005249 ORTHO05D006457 1.1e-61 240.4 163 75.5
AL1G58630 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 1.4e-61 240.0 169 73.4
Lsat_1_v5_gn_5_5181 Lactuca sativa HOM05D005249 ORTHO05D006457 1.8e-61 239.6 179 71.5
AL8G37450 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 2.4e-61 239.2 147 80.3
C05p33210 Brassica napus HOM05D005249 ORTHO05D006457 2.4e-61 239.2 147 81.0
AT1G50900 Arabidopsis thaliana HOM05D005249 ORTHO05D006457 3.1e-61 238.8 147 80.3
Sp1g37640 Schrenkiella parvula HOM05D005249 ORTHO05D006457 3.1e-61 238.8 147 81.0
Sp3g18550 Schrenkiella parvula HOM05D005249 ORTHO05D006457 3.1e-61 238.8 179 73.7
Medtr3g019320 Medicago truncatula HOM05D005249 ORTHO05D006457 5.3e-61 238.0 181 71.3
Carub.0001s3985 Capsella rubella HOM05D005249 ORTHO05D006457 6.9e-61 237.7 170 72.9
PSO210G5271 Papaver somniferum HOM05D005249 ORTHO05D006457 6.9e-61 237.7 185 68.6
MBI02_g28338_MAGBIO Magnolia biondii HOM05D005249 ORTHO05D006457 1.5e-60 236.5 178 70.2
Peaxi162Scf00387g00046 Petunia axillaris HOM05D005249 ORTHO05D006457 1.5e-60 236.5 176 71.0
BcaB07g33531 Brassica carinata HOM05D005249 ORTHO05D006457 2.0e-60 236.1 162 74.1
MELO3C025397.2 Cucumis melo HOM05D005249 ORTHO05D006457 3.4e-60 235.3 174 71.3
SGA_v2.0_scaffold258G45797 Striga asiatica HOM05D005249 ORTHO05D006457 4.5e-60 235.0 182 68.1
A05p28310 Brassica napus HOM05D005249 ORTHO05D006457 5.8e-60 234.6 185 71.9
BraA05t21713Z Brassica rapa HOM05D005249 ORTHO05D006457 5.8e-60 234.6 185 71.9
C05p43800 Brassica napus HOM05D005249 ORTHO05D006457 7.6e-60 234.2 182 72.0
Thhalv10011819m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 7.6e-60 234.2 147 78.2
Atru.chr2.3277 Acer truncatum HOM05D005249 ORTHO05D006457 1.0e-59 233.8 167 71.9
BolC5t33095H Brassica oleracea HOM05D005249 ORTHO05D006457 1.3e-59 233.4 185 71.4
Carub.0003s2051 Capsella rubella HOM05D005249 ORTHO05D006457 1.3e-59 233.4 177 74.0
CsaV3_3G005280 Cucumis sativus L. HOM05D005249 ORTHO05D006457 2.2e-59 232.6 174 70.7
Migut.M01785 Erythranthe guttata HOM05D005249 ORTHO05D006457 4.9e-59 231.5 148 79.1
HanXRQChr05g0159111 Helianthus annuus HOM05D005249 ORTHO05D006457 8.4e-59 230.7 174 70.1
Thhalv10021639m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 1.1e-58 230.3 168 74.4
PGSC0003DMG400014394 Solanum tuberosum HOM05D005249 ORTHO05D006457 1.9e-58 229.6 177 67.8
PSO832G4498 Papaver somniferum HOM05D005249 ORTHO05D006457 2.5e-58 229.2 185 66.5
unitig_578.g16003 Utricularia gibba HOM05D005249 ORTHO05D006457 3.2e-58 228.8 178 64.0
Sc16g0006280 Simmondsia chinensis HOM05D005249 ORTHO05D006457 1.2e-57 226.9 179 67.0
Dinv40734 Davidia involucrata HOM05D005249 ORTHO05D006457 2.1e-57 226.1 150 75.3
MSTRG.15162 Avicennia marina HOM05D005249 ORTHO05D006457 2.7e-57 225.7 165 72.1
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 2.7e-57 225.7 162 72.2
Solyc10g006370.3 Solanum lycopersicum HOM05D005249 ORTHO05D006457 3.5e-57 225.3 177 67.2
ECA246G1486 Erigeron canadensis HOM05D005249 ORTHO05D006457 2.3e-56 222.6 155 74.8
Ah.06g182920 Amaranthus hybridus HOM05D005249 ORTHO05D006457 3.0e-56 222.2 180 67.8
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 3.0e-56 222.2 286 48.3
Sed0007548 Sechium edule HOM05D005249 ORTHO05D006457 3.0e-56 222.2 150 78.0
AUR62020502 Chenopodium quinoa HOM05D005249 ORTHO05D006457 3.9e-56 221.9 179 66.5
Actinidia05108 Actinidia chinensis HOM05D005249 ORTHO05D006457 6.7e-56 221.1 182 67.6
Actinidia09913 Actinidia chinensis HOM05D005249 ORTHO05D006457 1.1e-55 220.3 182 68.1
AUR62015702 Chenopodium quinoa HOM05D005249 ORTHO05D006457 1.5e-55 219.9 179 65.9
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 5.7e-55 218.0 130 80.8
ATR0752G229 Amborella trichopoda HOM05D005249 ORTHO05D006457 7.4e-55 217.6 151 75.5
Nitab4.5_0005048g0030 Nicotiana tabacum HOM05D005249 ORTHO05D006457 1.3e-54 216.9 183 66.7
CDE05G2685 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 2.1e-54 216.1 125 84.8
Oeu062605.1 Olea europaea HOM05D005249 ORTHO05D006457 2.8e-54 215.7 174 64.4
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 3.7e-54 215.3 286 46.2
Rhsim04G0001800 Rhododendron simsii HOM05D005249 ORTHO05D006457 3.7e-54 215.3 185 66.5
Sopen10g002320 Solanum pennellii HOM05D005249 ORTHO05D006457 1.2e-52 210.3 136 75.7
HPP92_017607 Vanilla planifolia HOM05D005249 ORTHO05D006457 1.5e-52 209.9 179 64.8
Zm00001eb322850 Zea mays HOM05D005249 ORTHO05D006457 2.0e-52 209.5 190 63.2
CAN.G1781.9 Capsicum annuum HOM05D005249 ORTHO05D006457 2.6e-52 209.1 183 63.9
BcaB02g11192 Brassica carinata HOM05D005249 ORTHO05D006457 1.7e-51 206.5 132 81.1
BcaB07g33530 Brassica carinata HOM05D005249 ORTHO05D006457 3.8e-51 205.3 136 74.3
EL10Ac4g07899 Beta vulgaris HOM05D005249 ORTHO05D006457 9.3e-50 200.7 176 60.8
CDE05G0273 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 1.2e-49 200.3 178 61.8
Os07g0520800 Oryza sativa ssp. japonica HOM05D005249 ORTHO05D006457 2.3e-48 196.1 140 72.9
CDE11G0574 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 1.9e-47 193.0 162 62.3
SMO137G0373 Selaginella moellendorffii HOM05D005249 ORTHO05D006457 9.7e-47 190.7 146 65.8
SEGI_08050 Sequoiadendron giganteum HOM05D005249 ORTHO05D006457 7.7e-44 181.0 152 63.8
vmacro09735 Vaccinium macrocarpon HOM05D005249 ORTHO05D006457 7.2e-42 174.5 215 54.0
Nitab4.5_0001393g0170 Nicotiana tabacum HOM05D005249 ORTHO05D006457 1.4e-40 170.2 187 56.7
CBR_g12744 Chara braunii HOM05D005249 ORTHO05D006457 3.0e-40 169.1 126 66.7
Pp3c5_16520 Physcomitrium patens HOM05D005249 ORTHO05D006457 8.2e-38 161.0 120 65.8
Mapoly0006s0110 Marchantia polymorpha HOM05D005249 ORTHO05D006457 1.4e-37 160.2 129 64.3
BcaB06g26188 Brassica carinata HOM05D005249 ORTHO05D006457 2.2e-35 152.9 168 54.2
CARHR096310 Cardamine hirsuta HOM05D005249 ORTHO05D006457 7.2e-34 147.9 87 88.5
CARHR040950 Cardamine hirsuta HOM05D005249 ORTHO05D006457 6.7e-32 141.4 87 81.6
Rhsim04G0000700 Rhododendron simsii HOM05D005249 ORTHO05D006457 6.7e-32 141.4 87 81.6
Cfa020388 Carpinus fangiana HOM05D005249 ORTHO05D006457 1.5e-31 140.2 82 86.6
Cre12.g551950 Chlamydomonas reinhardtii HOM05D005249 ORTHO05D006457 1.3e-30 137.1 100 61.0
FAN21G3293 Fragaria x ananassa HOM05D005249 ORTHO05D006457 1.7e-30 136.7 82 85.4
TPR.G3850 Trifolium pratense HOM05D005249 ORTHO05D006457 2.4e-29 132.9 81 80.2
Glyma.09G102000 Glycine max HOM05D005249 ORTHO05D006457 4.2e-26 122.1 86 74.4
PRCOL_00000858 Prasinoderma coloniale HOM05D005249 ORTHO05D006457 2.1e-25 119.8 100 55.0
MCO16G329 Micromonas commoda HOM05D005249 ORTHO05D006457 1.5e-23 113.6 100 55.0
CARHR040940 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.1e-21 107.5 85 64.7
Nn1g07101 Nelumbo nucifera HOM05D005249 ORTHO05D006457 2.0e-20 103.2 92 59.8
BcaC05g27384 Brassica carinata HOM05D005249 ORTHO05D006457 3.5e-20 102.4 61 77.0
CARHR096330 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.5e-18 97.1 102 54.9
Atru.chr2.3276 Acer truncatum HOM05D005249 ORTHO05D006457 5.2e-16 88.6 54 83.3
BcaC05g27382 Brassica carinata HOM05D005249 ORTHO05D006457 6.3e-14 81.6 54 79.6
FAN11G2388 Fragaria x ananassa HOM05D000371 ORTHO05D006340 1.4e-13 80.5 93 50.5
FvH4_3g22200 Fragaria vesca HOM05D000371 ORTHO05D006340 7.0e-13 78.2 93 50.5
RcHm_v2.0_Chr5g0038161 Rosa chinensis HOM05D000371 ORTHO05D006340 1.6e-12 77.0 91 50.5
FAN16G2982 Fragaria x ananassa HOM05D000371 ORTHO05D006340 5.9e-12 75.1 93 49.5
CBR_g602 Chara braunii HOM05D005249 ORTHO05D006457 1.2e-09 67.4 69 43.5
Hund02097 Selenicereus undatus HOM05D000420 ORTHO05D000110 8.0e-09 64.7 44 72.7
Ah.04g165680 Amaranthus hybridus HOM05D005769 ORTHO05D006851 1.7e-06 57.0 36 72.2


User provided reference genes

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