Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 8.7e-108 393.7 200 100.0
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 2.1e-85 319.3 201 81.1
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 1.3e-66 256.9 199 63.8
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 1.1e-65 253.8 199 63.3
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 1.8e-65 253.1 198 62.6
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 2.4e-65 252.7 199 63.8
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 3.1e-65 252.3 196 65.3
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 3.1e-65 252.3 199 63.3
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 4.1e-65 251.9 201 63.2
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 2.6e-64 249.2 196 62.8
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 5.9e-64 248.1 199 60.3
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 7.7e-64 247.7 200 61.0
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 1.3e-63 246.9 200 61.5
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 2.9e-63 245.7 197 61.4
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 3.8e-63 245.4 190 63.7
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 3.8e-63 245.4 190 63.7
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 3.8e-63 245.4 199 64.3
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 6.5e-63 244.6 199 60.8
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 8.5e-63 244.2 200 61.5
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 1.5e-62 243.4 196 61.7
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 2.5e-62 242.7 200 61.0
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 4.2e-62 241.9 196 63.3
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 9.4e-62 240.7 190 62.6
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 9.4e-62 240.7 187 63.6
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 1.6e-61 240.0 195 60.0
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 2.1e-61 239.6 196 59.2
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.6e-61 238.8 196 59.7
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 3.6e-61 238.8 199 58.3
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 1.4e-60 236.9 246 52.8
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 1.8e-60 236.5 201 60.7
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 1.8e-60 236.5 196 62.2
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 3.0e-60 235.7 193 61.7
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 1.2e-59 233.8 200 60.0
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 2.0e-59 233.0 198 58.1
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 3.3e-59 232.3 198 58.1
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 5.7e-59 231.5 199 56.8
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 5.7e-59 231.5 186 60.2
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 2.2e-58 229.6 197 57.4
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 6.3e-58 228.0 192 58.3
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 8.2e-58 227.6 197 56.9
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 8.2e-58 227.6 197 59.9
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 8.2e-58 227.6 190 58.9
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 1.1e-57 227.3 199 55.3
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 1.4e-57 226.9 201 56.2
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.4e-57 226.9 198 56.1
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.4e-57 226.9 195 57.9
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 2.4e-57 226.1 199 56.3
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 2.4e-57 226.1 197 57.9
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 3.1e-57 225.7 199 55.3
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 5.3e-57 224.9 199 58.3
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 5.3e-57 224.9 199 58.8
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 7.0e-57 224.6 199 57.3
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 1.2e-56 223.8 199 56.3
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.0e-56 223.0 192 58.3
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 2.0e-56 223.0 199 54.8
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 2.0e-56 223.0 197 54.8
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.0e-56 223.0 191 57.6
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 2.7e-56 222.6 198 57.6
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 3.5e-56 222.2 198 56.1
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 3.5e-56 222.2 195 56.4
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 7.7e-56 221.1 196 56.6
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 1.3e-55 220.3 200 53.0
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.7e-55 219.9 192 57.8
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.9e-55 219.2 198 56.6
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 2.9e-55 219.2 198 56.6
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 3.8e-55 218.8 199 54.3
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 3.8e-55 218.8 195 55.9
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 5.0e-55 218.4 199 54.3
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 6.5e-55 218.0 195 54.9
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 6.5e-55 218.0 192 57.3
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 6.5e-55 218.0 190 55.8
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 6.5e-55 218.0 185 58.4
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 8.5e-55 217.6 198 56.1
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 1.1e-54 217.2 194 56.7
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 1.1e-54 217.2 192 56.2
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.1e-54 217.2 190 55.8
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 1.5e-54 216.9 200 54.0
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 3.2e-54 215.7 195 57.9
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 3.2e-54 215.7 197 53.3
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 4.2e-54 215.3 199 54.8
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 4.2e-54 215.3 199 54.8
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 5.5e-54 214.9 197 53.3
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 7.2e-54 214.5 201 56.2
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 9.4e-54 214.2 197 53.3
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 1.6e-53 213.4 199 54.8
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 2.1e-53 213.0 199 52.8
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 2.1e-53 213.0 199 54.3
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 2.7e-53 212.6 199 55.8
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 3.6e-53 212.2 197 52.8
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 4.7e-53 211.8 198 56.1
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 6.1e-53 211.5 194 54.6
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 6.1e-53 211.5 198 54.5
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 1.0e-52 210.7 197 51.8
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 1.0e-52 210.7 196 53.1
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 1.0e-52 210.7 199 54.8
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 1.4e-52 210.3 198 54.5
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 1.8e-52 209.9 197 52.3
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 5.2e-52 208.4 198 51.0
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.5e-51 206.8 198 53.5
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 2.0e-51 206.5 197 51.3
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.0e-51 206.5 195 54.4
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 2.6e-51 206.1 198 52.0
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 5.7e-51 204.9 195 53.3
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 7.5e-51 204.5 199 54.3
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 9.8e-51 204.1 197 52.8
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.3e-50 203.8 191 54.5
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 2.8e-50 202.6 198 51.0
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 2.8e-50 202.6 177 56.5
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 6.3e-50 201.4 175 56.6
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 1.4e-49 200.3 197 50.8
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 1.4e-49 200.3 193 53.4
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.4e-49 200.3 190 55.3
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 1.4e-49 200.3 195 53.3
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 4.1e-49 198.7 203 53.2
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 4.1e-49 198.7 200 50.0
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 9.1e-49 197.6 174 55.7
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 5.9e-48 194.9 195 51.8
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 5.9e-48 194.9 199 49.2
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 1.3e-47 193.7 202 53.0
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 1.7e-47 193.4 181 53.6
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 5.0e-47 191.8 195 51.8
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 5.0e-47 191.8 190 50.5
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 8.6e-47 191.0 195 51.8
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 8.6e-47 191.0 195 51.3
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.1e-46 190.7 193 49.7
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.9e-46 189.9 178 52.8
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 1.9e-46 189.9 149 61.1
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 3.3e-46 189.1 193 49.7
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 4.2e-46 188.7 194 49.0
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 5.5e-46 188.3 194 49.0
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 7.2e-46 188.0 195 50.3
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 9.5e-46 187.6 138 62.3
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 2.1e-45 186.4 194 48.5
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 2.8e-45 186.0 194 48.5
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.4e-44 183.7 149 61.7
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 4.0e-44 182.2 195 48.7
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.2e-43 180.6 190 48.4
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 4.4e-43 178.7 166 54.8
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 7.5e-43 177.9 199 49.7
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 4.9e-42 175.3 166 53.6
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 6.3e-42 174.9 195 48.2
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.4e-41 173.7 163 54.6
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 3.3e-38 162.5 198 46.0
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 3.3e-38 162.5 194 44.3
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 4.7e-37 158.7 150 54.7
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 4.7e-37 158.7 165 51.5
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 8.0e-37 157.9 163 51.5
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 3.4e-35 152.5 129 56.6
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 4.4e-35 152.1 133 54.9
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 7.5e-35 151.4 126 56.3
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 9.8e-35 151.0 149 51.0
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 1.3e-34 150.6 196 39.8
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.7e-34 150.2 190 43.2
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.9e-34 149.4 196 41.3
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.7e-34 149.1 199 40.2
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.4e-33 147.1 191 40.3
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 4.6e-32 142.1 192 41.7
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 6.6e-31 138.3 195 39.0
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 1.9e-30 136.7 195 39.0
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 4.7e-29 132.1 203 39.9
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 4.7e-29 132.1 195 40.0
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 6.2e-29 131.7 156 48.7
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 8.9e-28 127.9 114 52.6
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 7.8e-24 114.8 196 37.8
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 5.8e-19 98.6 111 46.8
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 7.1e-17 91.7 215 31.2
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 1.2e-16 90.9 228 29.8
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.6e-16 90.5 185 36.8
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 2.7e-16 89.7 197 32.5
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 7.8e-16 88.2 105 44.8
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.9e-15 85.9 189 34.4
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 2.1e-13 80.1 84 50.0
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 6.2e-13 78.6 73 52.1
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.8e-12 77.0 76 50.0
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 6.8e-12 75.1 177 29.4
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.9e-06 57.0 91 36.3
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 3.3e-06 56.2 85 36.5
Pp3c23_8370 Physcomitrium patens HOM05D003838 ORTHO05D004444 4.3e-06 55.8 166 30.1


User provided reference genes

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