Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G061900 Manihot esculenta HOM05D004814 ORTHO05D005778 5.8e-110 401.0 213 100.0
Manes.03G139872 Manihot esculenta HOM05D004814 ORTHO05D005778 8.4e-93 344.0 213 86.4
Potri.011G092800 Populus trichocarpa HOM05D004814 ORTHO05D005778 1.1e-73 280.4 214 74.8
QL08p004842 Quercus lobata HOM05D004814 ORTHO05D005778 5.3e-71 271.6 217 71.9
Sabra11G0087000 Salix brachista HOM05D004814 ORTHO05D005778 9.0e-71 270.8 214 72.0
Potri.001G365600 Populus trichocarpa HOM05D004814 ORTHO05D005778 1.3e-69 266.9 213 72.8
CiPaw.12G136400 Carya illinoinensis HOM05D004814 ORTHO05D005778 8.5e-69 264.2 215 68.4
arahy.Tifrunner.gnm1.ann1.X98J9H Arachis hypogaea HOM05D004814 ORTHO05D005778 1.4e-68 263.5 214 69.6
CsaV3_7G018640 Cucumis sativus L. HOM05D004814 ORTHO05D005778 1.9e-68 263.1 216 69.9
arahy.Tifrunner.gnm1.ann1.0CA1AM Arachis hypogaea HOM05D004814 ORTHO05D005778 3.2e-68 262.3 216 67.6
arahy.Tifrunner.gnm1.ann1.CWZH2K Arachis hypogaea HOM05D004814 ORTHO05D005778 3.2e-68 262.3 213 68.5
Sabra16G0239200 Salix brachista HOM05D004814 ORTHO05D005778 3.2e-68 262.3 217 71.0
Cfa020215 Carpinus fangiana HOM05D004814 ORTHO05D005778 4.2e-68 261.9 215 67.9
CANSAT11G0174 Cannabis sativa HOM05D004814 ORTHO05D005778 5.5e-68 261.5 216 69.0
ClCG09G021040 Citrullus lanatus HOM05D004814 ORTHO05D005778 5.5e-68 261.5 219 68.5
MELO3C024899.2 Cucumis melo HOM05D004814 ORTHO05D005778 2.1e-67 259.6 219 68.0
TWI38G0785 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 3.0e-66 255.8 213 67.6
arahy.Tifrunner.gnm1.ann1.RG8M6K Arachis hypogaea HOM05D004814 ORTHO05D005778 5.1e-66 255.0 216 67.1
Dinv10318 Davidia involucrata HOM05D004814 ORTHO05D005778 6.7e-66 254.6 216 69.4
TWI39G1010 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 1.1e-65 253.8 213 68.1
Lalb_Chr05g0211691 Lupinus albus HOM05D004814 ORTHO05D005778 1.5e-65 253.4 214 66.8
Sed0017349 Sechium edule HOM05D004814 ORTHO05D005778 4.3e-65 251.9 213 67.6
Nn1g03216 Nelumbo nucifera HOM05D004814 ORTHO05D005778 5.7e-65 251.5 214 66.8
Glyma.18G079900 Glycine max HOM05D004814 ORTHO05D005778 7.4e-65 251.1 216 69.4
Dinv40842 Davidia involucrata HOM05D004814 ORTHO05D005778 1.3e-64 250.4 216 68.1
Glyma.08G327500 Glycine max HOM05D004814 ORTHO05D005778 2.2e-64 249.6 215 66.5
TAR626G1431 Trochodendron aralioides HOM05D004814 ORTHO05D005778 3.7e-64 248.8 213 66.2
GSVIVG01014640001 Vitis vinifera HOM05D004814 ORTHO05D005778 3.7e-64 248.8 210 68.1
BcaC05g29209 Brassica carinata HOM05D004814 ORTHO05D005778 2.4e-63 246.1 219 66.2
C05p54820 Brassica napus HOM05D004814 ORTHO05D005778 2.4e-63 246.1 219 66.2
Aa31LG8G330 Aethionema arabicum HOM05D004814 ORTHO05D005778 4.1e-63 245.4 217 66.8
MD03G1187000 Malus domestica HOM05D004814 ORTHO05D005778 4.1e-63 245.4 213 68.5
BolC5t34154H Brassica oleracea HOM05D004814 ORTHO05D005778 5.3e-63 245.0 219 66.2
BraA05t22442Z Brassica rapa HOM05D004814 ORTHO05D005778 5.3e-63 245.0 215 66.0
A05p36420 Brassica napus HOM05D004814 ORTHO05D005778 2.0e-62 243.0 218 66.5
FvH4_3g29500 Fragaria vesca HOM05D004814 ORTHO05D005778 2.0e-62 243.0 213 69.5
FAN11G3417 Fragaria x ananassa HOM05D004814 ORTHO05D005778 2.0e-62 243.0 213 69.5
CARHR087710 Cardamine hirsuta HOM05D004814 ORTHO05D005778 4.5e-62 241.9 213 67.1
FAN16G2593 Fragaria x ananassa HOM05D004814 ORTHO05D005778 4.5e-62 241.9 213 69.5
BcaB06g25486 Brassica carinata HOM05D004814 ORTHO05D005778 5.9e-62 241.5 213 65.7
Sp3g11290 Schrenkiella parvula HOM05D004814 ORTHO05D005778 5.9e-62 241.5 217 67.7
TAR629G3287 Trochodendron aralioides HOM05D004814 ORTHO05D005778 7.7e-62 241.1 213 65.3
Actinidia30418 Actinidia chinensis HOM05D004814 ORTHO05D005778 1.0e-61 240.7 215 68.4
BraA03t12957Z Brassica rapa HOM05D004814 ORTHO05D005778 1.0e-61 240.7 216 67.1
FAN21G1289 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.0e-61 240.7 213 69.0
Thhalv10021566m.g Eutrema salsugineum HOM05D004814 ORTHO05D005778 1.3e-61 240.4 216 66.2
FAN25G3790 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.3e-61 240.4 213 68.5
THA.LOC104815700 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 1.3e-61 240.4 219 68.0
THA.LOC104822735 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 1.3e-61 240.4 216 66.7
RcHm_v2.0_Chr5g0054381 Rosa chinensis HOM05D004814 ORTHO05D005778 1.7e-61 240.0 216 69.0
AT3G13120 Arabidopsis thaliana HOM05D004814 ORTHO05D005778 2.2e-61 239.6 213 66.2
AL3G24860 Arabidopsis lyrata HOM05D004814 ORTHO05D005778 2.9e-61 239.2 213 66.2
BcaNung05270 Brassica carinata HOM05D004814 ORTHO05D005778 2.9e-61 239.2 216 66.7
Actinidia05019 Actinidia chinensis HOM05D004814 ORTHO05D005778 3.8e-61 238.8 215 67.4
Aa31LG10G250 Aethionema arabicum HOM05D004814 ORTHO05D005778 3.8e-61 238.8 217 65.4
C03p46130 Brassica napus HOM05D004814 ORTHO05D005778 3.8e-61 238.8 218 66.1
BcaC01g04010 Brassica carinata HOM05D004814 ORTHO05D005778 5.0e-61 238.4 218 65.6
BolC3t16886H Brassica oleracea HOM05D004814 ORTHO05D005778 5.0e-61 238.4 218 65.6
Ca_20138_v3 Cicer arietinum L. HOM05D004814 ORTHO05D005778 1.1e-60 237.3 216 63.9
Haze_09803 Corylus avellana HOM05D004814 ORTHO05D005778 1.1e-60 237.3 215 64.2
PSO541G0969 Papaver somniferum HOM05D004814 ORTHO05D005778 1.1e-60 237.3 215 64.7
A03p38040 Brassica napus HOM05D004814 ORTHO05D005778 1.9e-60 236.5 216 67.1
Hma1.2p1_0889F.1_g232870 Hydrangea macrophylla HOM05D004814 ORTHO05D005778 1.9e-60 236.5 225 63.6
PSO675G8482 Papaver somniferum HOM05D004814 ORTHO05D005778 3.2e-60 235.7 215 63.7
Gorai.007G310400 Gossypium raimondii HOM05D004814 ORTHO05D005778 4.2e-60 235.3 213 64.8
Gohir.D11G287000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 7.2e-60 234.6 213 64.8
Gohir.A11G276900 Gossypium hirsutum HOM05D004814 ORTHO05D005778 9.4e-60 234.2 213 64.3
EL10Ac4g07605 Beta vulgaris HOM05D004814 ORTHO05D005778 2.7e-59 232.6 216 64.4
CSS0025876 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 2.7e-59 232.6 218 65.1
Duzib213G0234 Durio zibethinus HOM05D004814 ORTHO05D005778 2.7e-59 232.6 213 64.3
THA.LOC104810287 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 2.7e-59 232.6 216 66.2
Atru.chr2.3664 Acer truncatum HOM05D004814 ORTHO05D005778 3.6e-59 232.3 212 64.2
Phvul.006G055300 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 3.6e-59 232.3 215 63.7
DCAR_013223 Daucus carota HOM05D004814 ORTHO05D005778 7.9e-59 231.1 213 65.3
Thecc.07G016800 Theobroma cacao HOM05D004814 ORTHO05D005778 7.9e-59 231.1 220 62.7
Phvul.001G030600 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 1.0e-58 230.7 215 62.3
A01p40420 Brassica napus HOM05D004814 ORTHO05D005778 1.4e-58 230.3 214 64.5
BraA01t04077Z Brassica rapa HOM05D004814 ORTHO05D005778 1.4e-58 230.3 214 64.5
Cc05_g14790 Coffea canephora HOM05D004814 ORTHO05D005778 1.8e-58 229.9 214 63.6
Carub.0003s1246 Capsella rubella HOM05D004814 ORTHO05D005778 2.3e-58 229.6 215 64.7
Sc16g0007970 Simmondsia chinensis HOM05D004814 ORTHO05D005778 3.0e-58 229.2 219 63.5
Lsat_1_v5_gn_9_90400 Lactuca sativa HOM05D004814 ORTHO05D005778 6.7e-58 228.0 210 63.3
Hund01909 Selenicereus undatus HOM05D004814 ORTHO05D005778 6.7e-58 228.0 215 62.8
TPR.G30737 Trifolium pratense HOM05D004814 ORTHO05D005778 6.7e-58 228.0 216 61.6
vmacro22713 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 8.8e-58 227.6 215 61.4
AUR62036421 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.1e-57 227.3 214 65.0
AUR62036427 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.1e-57 227.3 214 65.0
AUR62040646 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.1e-57 227.3 214 65.0
Gohir.A01G090000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 1.5e-57 226.9 213 64.8
Gohir.D01G075300 Gossypium hirsutum HOM05D004814 ORTHO05D005778 2.0e-57 226.5 213 64.3
Gorai.002G098500 Gossypium raimondii HOM05D004814 ORTHO05D005778 2.0e-57 226.5 213 64.3
MD11G1202000 Malus domestica HOM05D004814 ORTHO05D005778 2.0e-57 226.5 213 64.3
Oeu057089.1 Olea europaea HOM05D004814 ORTHO05D005778 3.3e-57 225.7 122 88.5
Psat5g170120 Pisum sativum HOM05D004814 ORTHO05D005778 3.3e-57 225.7 213 62.0
COL.COLO4_09806 Corchorus olitorius HOM05D004814 ORTHO05D005778 4.4e-57 225.3 213 62.9
AUR62017069 Chenopodium quinoa HOM05D004814 ORTHO05D005778 7.4e-57 224.6 222 63.5
Prupe.4G239600 Prunus persica HOM05D004814 ORTHO05D005778 1.7e-56 223.4 213 62.4
Sopen10g001990 Solanum pennellii HOM05D004814 ORTHO05D005778 3.7e-56 222.2 211 63.5
Rhsim06G0227300 Rhododendron simsii HOM05D004814 ORTHO05D005778 4.8e-56 221.9 216 60.2
PGSC0003DMG400014378 Solanum tuberosum HOM05D004814 ORTHO05D005778 4.8e-56 221.9 211 63.5
Ciclev10009615m.g Citrus clementina HOM05D004814 ORTHO05D005778 8.2e-56 221.1 216 61.1
CAN.G492.31 Capsicum annuum HOM05D004814 ORTHO05D005778 1.1e-55 220.7 216 61.6
ECA240G4731 Erigeron canadensis HOM05D001580 ORTHO05D001517 1.8e-55 219.9 154 72.7
Nitab4.5_0006756g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 2.4e-55 219.5 213 61.5
Solyc10g006030.3 Solanum lycopersicum HOM05D004814 ORTHO05D005778 2.4e-55 219.5 211 62.6
Ah.06g181280 Amaranthus hybridus HOM05D004814 ORTHO05D005778 5.3e-55 218.4 218 64.2
Oeu049351.1 Olea europaea HOM05D004814 ORTHO05D005778 5.3e-55 218.4 215 60.9
PGR031G1774 Punica granatum HOM05D004814 ORTHO05D005778 5.3e-55 218.4 219 63.0
A01p40680 Brassica napus HOM05D004814 ORTHO05D005778 7.0e-55 218.0 118 90.7
Peaxi162Scf00900g00010 Petunia axillaris HOM05D004814 ORTHO05D005778 9.1e-55 217.6 154 73.4
CSS0019029 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 1.2e-54 217.2 113 93.8
Aqoxy4G02247 Aquilegia oxysepala HOM05D004814 ORTHO05D005778 2.0e-54 216.5 210 60.5
Nitab4.5_0003491g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 2.6e-54 216.1 213 61.0
HanXRQChr03g0061321 Helianthus annuus HOM05D004814 ORTHO05D005778 3.5e-54 215.7 213 60.6
unitig_62.g23297 Utricularia gibba HOM05D004814 ORTHO05D005778 3.5e-54 215.7 199 61.3
Ah.04g166490 Amaranthus hybridus HOM05D004814 ORTHO05D005778 1.7e-53 213.4 213 61.5
Medtr3g058430 Medicago truncatula HOM05D004814 ORTHO05D005778 2.2e-53 213.0 214 59.8
Eucgr.F03697 Eucalyptus grandis HOM05D004814 ORTHO05D005778 2.9e-53 212.6 215 61.4
Cpa.g.sc12.175 Carica papaya HOM05D004814 ORTHO05D005778 8.5e-53 211.1 104 98.1
CDE10G1086 Ceratophyllum demersum HOM05D004814 ORTHO05D005778 1.1e-52 210.7 111 91.0
Lj1P888T30 Lonicera japonica HOM05D004814 ORTHO05D005778 4.2e-52 208.8 104 97.1
MSTRG.14478 Avicennia marina HOM05D004814 ORTHO05D005778 5.5e-52 208.4 213 59.6
HanXRQChr13g0408121 Helianthus annuus HOM05D004814 ORTHO05D005778 7.2e-52 208.0 213 59.6
VMungo0248G0001 Vigna mungo HOM05D004814 ORTHO05D005778 9.4e-52 207.6 104 95.2
Zm00001eb008100 Zea mays HOM05D004814 ORTHO05D005778 9.4e-52 207.6 183 63.9
ATR0624G087 Amborella trichopoda HOM05D004814 ORTHO05D005778 3.6e-51 205.7 104 95.2
Os03g0196800 Oryza sativa ssp. japonica HOM05D004814 ORTHO05D005778 6.1e-51 204.9 112 85.7
Actinidia05024 Actinidia chinensis HOM05D004814 ORTHO05D005778 8.0e-51 204.5 213 61.0
BraA01t04102Z Brassica rapa HOM05D004814 ORTHO05D005778 1.0e-50 204.1 104 94.2
C01p51960 Brassica napus HOM05D004814 ORTHO05D005778 1.4e-50 203.8 183 62.3
HPP92_020399 Vanilla planifolia HOM05D004814 ORTHO05D005778 1.8e-50 203.4 204 60.8
SGA_v2.0_scaffold8G04398 Striga asiatica HOM05D004814 ORTHO05D005778 3.0e-50 202.6 213 58.7
QL05p065674 Quercus lobata HOM05D004814 ORTHO05D005778 4.0e-50 202.2 110 90.9
Zm00001eb401060 Zea mays HOM05D004814 ORTHO05D005778 1.1e-49 200.7 199 61.3
QL05p065593 Quercus lobata HOM05D004814 ORTHO05D005778 3.5e-46 189.1 103 91.3
MBI19_g45743_MAGBIO Magnolia biondii HOM05D004814 ORTHO05D005778 4.5e-46 188.7 100 89.0
Pp3c24_19230 Physcomitrium patens HOM05D004814 ORTHO05D005778 1.6e-43 180.3 126 71.4
PSO832G2117 Papaver somniferum HOM05D004814 ORTHO05D005778 6.1e-43 178.3 218 53.7
AagrBONN_evm.TU.Sc2ySwM_117.1321 Anthoceros agrestis HOM05D004814 ORTHO05D005778 8.0e-43 177.9 104 79.8
Mapoly0009s0107 Marchantia polymorpha HOM05D004814 ORTHO05D005778 1.4e-42 177.2 111 76.6
Pp3c8_18990 Physcomitrium patens HOM05D004814 ORTHO05D005778 1.4e-42 177.2 124 71.0
Pp3c20_8830 Physcomitrium patens HOM05D004814 ORTHO05D005778 4.8e-40 168.7 195 52.8
SEGI_32296 Sequoiadendron giganteum HOM05D004814 ORTHO05D005778 1.3e-37 160.6 117 68.4
CBR_g19640 Chara braunii HOM05D004814 ORTHO05D005778 1.6e-35 153.7 101 68.3
SMO228G0012 Selaginella moellendorffii HOM05D004814 ORTHO05D005778 4.4e-33 145.6 102 64.7
MCO07G521 Micromonas commoda HOM05D004814 ORTHO05D005778 1.4e-31 140.6 121 57.0
MSTRG.13015 Avicennia marina HOM05D004814 ORTHO05D005778 4.5e-30 135.6 168 51.2
PRCOL_00000430 Prasinoderma coloniale HOM05D004814 ORTHO05D005778 1.4e-23 114.0 134 44.0
Cre03.g195650 Chlamydomonas reinhardtii HOM05D004814 ORTHO05D005778 6.6e-21 105.1 123 43.1
vmacro17432 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 7.1e-07 58.5 215 31.2


User provided reference genes

Program Settings