Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G038500 Manihot esculenta HOM05D006440 ORTHO05D003987 0.0e+00 1129.4 551 100.0
Manes.03G166900 Manihot esculenta HOM05D006440 ORTHO05D003987 1.3e-267 926.0 585 78.6
Potri.010G073600 Populus trichocarpa HOM05D006440 ORTHO05D003987 1.6e-249 865.9 585 72.6
Duzib212G0326 Durio zibethinus HOM05D006440 ORTHO05D003987 5.3e-248 860.9 585 73.2
QL06p016694 Quercus lobata HOM05D006440 ORTHO05D003987 4.2e-245 851.3 585 72.3
GSVIVG01027730001 Vitis vinifera HOM05D006440 ORTHO05D003987 1.2e-244 849.7 588 71.8
Ciclev10004596m.g Citrus clementina HOM05D006440 ORTHO05D003987 4.6e-244 847.8 587 71.4
Potri.008G165000 Populus trichocarpa HOM05D006440 ORTHO05D003987 1.8e-243 845.9 585 71.8
Gohir.A09G225400 Gossypium hirsutum HOM05D006440 ORTHO05D003987 3.0e-243 845.1 585 72.1
CiPaw.02G114500 Carya illinoinensis HOM05D006440 ORTHO05D003987 3.9e-243 844.7 585 71.5
Atru.chr4.2134 Acer truncatum HOM05D006440 ORTHO05D003987 1.1e-240 836.6 588 71.4
TWI09G0180 Tripterygium wilfordii HOM05D006440 ORTHO05D003987 5.0e-238 827.8 585 70.3
Gohir.D09G227100 Gossypium hirsutum HOM05D006440 ORTHO05D003987 1.6e-236 822.8 585 70.8
Sabra10G0034700 Salix brachista HOM05D006440 ORTHO05D003987 1.6e-236 822.8 630 66.8
Eucgr.H03137 Eucalyptus grandis HOM05D006440 ORTHO05D003987 6.1e-236 820.8 586 69.8
CsaV3_3G012320 Cucumis sativus L. HOM05D006440 ORTHO05D003987 8.2e-233 810.4 585 68.5
COL.COLO4_15832 Corchorus olitorius HOM05D006440 ORTHO05D003987 6.9e-232 807.4 585 68.7
MELO3C006441.2 Cucumis melo HOM05D006440 ORTHO05D003987 2.6e-231 805.4 585 68.4
CSS0026181 Camellia sinensis var. sinensis HOM05D006440 ORTHO05D003987 7.7e-231 803.9 589 68.4
CANSAT78G1511 Cannabis sativa HOM05D006440 ORTHO05D003987 7.7e-231 803.9 585 68.5
ClCG05G004420 Citrullus lanatus HOM05D006440 ORTHO05D003987 1.0e-230 803.5 624 64.6
Lalb_Chr02g0150571 Lupinus albus HOM05D006440 ORTHO05D003987 1.4e-229 799.7 585 67.7
Lj5g0005322 Lotus japonicus HOM05D006440 ORTHO05D003987 4.2e-229 798.1 586 68.3
Sed0013572 Sechium edule HOM05D006440 ORTHO05D003987 5.5e-229 797.7 585 68.5
Ca_09816_v3 Cicer arietinum L. HOM05D006440 ORTHO05D003987 2.6e-226 788.9 586 67.2
arahy.Tifrunner.gnm1.ann1.A0C0SS Arachis hypogaea HOM05D006440 ORTHO05D003987 6.3e-225 784.3 575 68.9
MD13G1210600 Malus domestica HOM05D006440 ORTHO05D003987 1.1e-224 783.5 585 67.0
Prupe.1G035000 Prunus persica HOM05D006440 ORTHO05D003987 3.1e-224 781.9 585 66.8
Nn1g02707 Nelumbo nucifera HOM05D006440 ORTHO05D003987 9.1e-224 780.4 593 65.8
HanXRQChr13g0418761 Helianthus annuus HOM05D006440 ORTHO05D003987 5.9e-223 777.7 591 64.8
PGR004G0512 Punica granatum HOM05D006440 ORTHO05D003987 7.7e-223 777.3 587 65.4
Medtr1g073920 Medicago truncatula HOM05D006440 ORTHO05D003987 5.0e-222 774.6 587 66.6
TAR365G0504 Trochodendron aralioides HOM05D006440 ORTHO05D003987 9.4e-221 770.4 588 66.0
Glyma.20G202700 Glycine max HOM05D006440 ORTHO05D003987 3.6e-220 768.5 584 65.8
Glyma.10G188100 Glycine max HOM05D006440 ORTHO05D003987 4.0e-219 765.0 585 65.3
arahy.Tifrunner.gnm1.ann1.WJ3SQN Arachis hypogaea HOM05D006440 ORTHO05D003987 5.2e-219 764.6 573 67.7
Gorai.006G249000 Gossypium raimondii HOM05D006440 ORTHO05D003987 1.2e-218 763.5 553 70.2
Rhsim04G0187900 Rhododendron simsii HOM05D006440 ORTHO05D003987 2.2e-217 759.2 622 62.7
VMungo0720G1034 Vigna mungo HOM05D006440 ORTHO05D003987 1.1e-216 756.9 585 65.3
vmacro08450 Vaccinium macrocarpon HOM05D006440 ORTHO05D003987 2.7e-215 752.3 662 60.0
Cc03_g05160 Coffea canephora HOM05D006440 ORTHO05D003987 3.5e-215 751.9 586 65.0
Phvul.007G129000 Phaseolus vulgaris HOM05D006440 ORTHO05D003987 3.5e-215 751.9 585 64.8
Sopen09g032600 Solanum pennellii HOM05D006440 ORTHO05D003987 7.7e-215 750.7 585 65.0
DCAR_027296 Daucus carota HOM05D006440 ORTHO05D003987 1.0e-214 750.4 588 63.8
Dinv29887 Davidia involucrata HOM05D006440 ORTHO05D003188 7.2e-213 744.2 554 67.9
CAN.G793.7 Capsicum annuum HOM05D006440 ORTHO05D003987 9.4e-213 743.8 589 65.0
MSTRG.9914 Avicennia marina HOM05D006440 ORTHO05D003987 4.7e-212 741.5 581 65.7
RcHm_v2.0_Chr4g0391871 Rosa chinensis HOM05D006440 ORTHO05D003987 1.0e-211 740.3 587 62.7
SalBow2G2218 Salvia bowleyana HOM05D006440 ORTHO05D003987 9.8e-210 733.8 605 63.0
FAN17G2886 Fragaria x ananassa HOM05D006440 ORTHO05D003987 1.8e-208 729.6 587 62.0
Migut.G00449 Erythranthe guttata HOM05D006440 ORTHO05D003987 3.1e-208 728.8 587 63.7
ECA240G3037 Erigeron canadensis HOM05D006440 ORTHO05D003987 2.7e-207 725.7 569 62.0
FvH4_4g03210 Fragaria vesca HOM05D006440 ORTHO05D003987 1.0e-206 723.8 587 62.0
THA.LOC104815988 Tarenaya hassleriana HOM05D006440 ORTHO05D003987 2.5e-205 719.2 576 61.6
MBI18_g37356_MAGBIO Magnolia biondii HOM05D006440 ORTHO05D003987 2.7e-204 715.7 637 58.7
SGA_v2.0_scaffold88G27269 Striga asiatica HOM05D006440 ORTHO05D003987 4.7e-204 714.9 588 62.6
Lsat_1_v5_gn_3_121341 Lactuca sativa HOM05D006440 ORTHO05D003987 6.1e-204 714.5 580 62.9
Thecc.04G250600 Theobroma cacao HOM05D006440 ORTHO05D003987 3.5e-199 698.7 563 63.9
Aqoxy2G03617 Aquilegia oxysepala HOM05D006440 ORTHO05D003987 2.9e-198 695.7 589 60.3
EL10Ac3g05914 Beta vulgaris HOM05D006440 ORTHO05D003987 1.9e-197 693.0 587 60.3
PSO017G7287 Papaver somniferum HOM05D006440 ORTHO05D003987 5.6e-197 691.4 588 59.4
PSO063G3815 Papaver somniferum HOM05D006440 ORTHO05D003987 2.8e-196 689.1 588 58.8
Psat6g132960 Pisum sativum HOM05D006440 ORTHO05D003987 2.8e-196 689.1 585 61.5
FAN12G1575 Fragaria x ananassa HOM05D006440 ORTHO05D003987 4.4e-194 681.8 587 59.6
FAN22G0224 Fragaria x ananassa HOM05D006440 ORTHO05D003987 1.3e-193 680.2 587 59.3
Oeu025570.2 Olea europaea HOM05D006440 ORTHO05D000397 4.9e-193 678.3 524 65.5
Solyc09g089660.4 Solanum lycopersicum HOM05D006440 ORTHO05D003987 1.1e-192 677.2 546 63.6
Haze_11338 Corylus avellana HOM05D006440 ORTHO05D003987 3.5e-191 672.2 647 56.4
Sp2g08350 Schrenkiella parvula HOM05D006440 ORTHO05D003987 4.6e-191 671.8 581 58.3
Ah.07g207430 Amaranthus hybridus HOM05D006440 ORTHO05D003987 5.0e-190 668.3 577 60.1
Thhalv10003170m.g Eutrema salsugineum HOM05D006440 ORTHO05D003987 6.6e-190 667.9 581 57.5
AUR62015479 Chenopodium quinoa HOM05D006440 ORTHO05D003987 1.8e-187 659.8 591 58.5
AL8G16820 Arabidopsis lyrata HOM05D006440 ORTHO05D003987 1.2e-186 657.1 577 57.7
Hund04543 Selenicereus undatus HOM05D006440 ORTHO05D003987 1.5e-186 656.8 588 59.5
BcaB07g30569 Brassica carinata HOM05D006440 ORTHO05D003987 3.4e-186 655.6 579 57.5
CDE06G0279 Ceratophyllum demersum HOM05D006440 ORTHO05D003987 1.9e-184 649.8 591 59.2
C02p44000 Brassica napus HOM05D006440 ORTHO05D003987 2.4e-184 649.4 579 57.0
BcaC03g16584 Brassica carinata HOM05D006440 ORTHO05D003987 3.2e-184 649.0 578 57.3
Lj6A660T45 Lonicera japonica HOM05D006440 ORTHO05D003987 5.4e-184 648.3 600 57.7
Aa31LG5G3660 Aethionema arabicum HOM05D006440 ORTHO05D003987 3.5e-183 645.6 579 57.5
BraA02t07826Z Brassica rapa HOM05D006440 ORTHO05D003987 3.5e-183 645.6 579 56.5
Peaxi162Scf00024g01821 Petunia axillaris HOM05D006440 ORTHO05D003987 3.5e-183 645.6 528 63.1
BolC2t10447H Brassica oleracea HOM05D006440 ORTHO05D003987 4.6e-183 645.2 576 57.1
A02p27870 Brassica napus HOM05D006440 ORTHO05D003987 1.3e-182 643.7 578 56.4
AT5G43500 Arabidopsis thaliana HOM05D006440 ORTHO05D003987 6.6e-182 641.3 590 56.4
Sc25g0004030 Simmondsia chinensis HOM05D006440 ORTHO05D003987 1.5e-181 640.2 522 61.5
Os04g0177600 Oryza sativa ssp. japonica HOM05D006440 ORTHO05D003987 5.2e-179 631.7 583 54.9
AUR62002263 Chenopodium quinoa HOM05D006440 ORTHO05D003987 8.9e-179 630.9 679 51.8
Actinidia04464 Actinidia chinensis HOM05D006440 ORTHO05D003987 2.0e-178 629.8 522 62.8
Nitab4.5_0008345g0020 Nicotiana tabacum HOM05D006440 ORTHO05D003987 3.7e-177 625.5 507 63.7
ATR0680G034 Amborella trichopoda HOM05D006440 ORTHO05D003987 2.4e-176 622.9 579 57.2
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 6.0e-175 618.2 483 66.0
CARHR180120 Cardamine hirsuta HOM05D006440 ORTHO05D003987 7.8e-175 617.8 578 55.5
unitig_748.g7321 Utricularia gibba HOM05D006440 ORTHO05D003987 3.8e-169 599.0 606 53.6
Carub.0008s0511 Capsella rubella HOM05D006440 ORTHO05D003987 4.1e-168 595.5 550 55.6
Nitab4.5_0000342g0190 Nicotiana tabacum HOM05D006440 ORTHO05D003987 3.2e-136 489.6 500 53.6
Psat2g067040 Pisum sativum HOM05D006440 ORTHO05D003987 1.8e-131 473.8 378 63.8
HPP92_008424 Vanilla planifolia HOM05D006440 ORTHO05D003987 1.2e-119 434.5 391 56.3
Pp3c3_14850 Physcomitrium patens HOM05D006440 ORTHO05D003987 6.5e-113 412.1 600 39.5
MD16G1213700 Malus domestica HOM05D006440 ORTHO05D003987 2.6e-106 390.2 505 47.3
Mapoly0028s0034 Marchantia polymorpha HOM05D006440 ORTHO05D003987 1.5e-104 384.4 433 47.6
SMO117G0008 Selaginella moellendorffii HOM05D006440 ORTHO05D003987 7.5e-101 372.1 585 36.6
PGSC0003DMG400017256 Solanum tuberosum HOM05D006440 ORTHO05D003987 1.4e-83 314.7 237 67.5
Cpa.g.sc44.85 Carica papaya HOM05D006440 ORTHO05D003987 2.4e-75 287.3 205 70.7
Zm00001eb087460 Zea mays HOM05D006440 ORTHO05D003987 2.7e-66 257.3 237 52.3
Zm00001eb087470 Zea mays HOM05D006440 ORTHO05D003987 2.3e-62 244.2 256 50.8
CBR_g37544 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-56 224.6 601 30.1
HPP92_027995 Vanilla planifolia HOM05D006440 ORTHO05D003987 2.1e-50 204.5 175 56.0
HanXRQChr13g0422471 Helianthus annuus HOM05D006440 ORTHO05D003987 2.8e-39 167.5 162 54.3
HPP92_008423 Vanilla planifolia HOM05D006440 ORTHO05D003987 3.9e-33 147.1 141 52.5
Dinv44661 Davidia involucrata HOM05D006440 ORTHO05D003987 5.8e-29 133.3 98 72.4
HanXRQChr13g0422461 Helianthus annuus HOM05D006440 ORTHO05D003987 1.1e-27 129.0 73 78.1
SEGI_34555 Sequoiadendron giganteum HOM05D006440 ORTHO05D003987 3.9e-25 120.6 100 52.0
Hma1.2p1_1716F.1_g299120 Hydrangea macrophylla HOM05D006440 ORTHO05D003987 8.2e-23 112.8 65 72.3
SHI00694 Sapria himalayana HOM05D006440 ORTHO05D003987 1.4e-14 85.5 72 58.3
Cfa026271 Carpinus fangiana HOM05D006440 ORTHO05D003987 1.2e-10 72.4 306 23.2
SHI00691 Sapria himalayana HOM05D000023 ORTHO05D000014 2.1e-10 71.6 44 75.0
Lalb_Chr12g0210411 Lupinus albus HOM05D000173 ORTHO05D004400 6.1e-10 70.1 295 24.7
Lj2g0020115 Lotus japonicus HOM05D000173 ORTHO05D004400 1.0e-09 69.3 295 25.8
arahy.Tifrunner.gnm1.ann1.1T6SIZ Arachis hypogaea HOM05D000173 ORTHO05D004400 1.4e-09 68.9 295 25.8
THA.LOC104813899 Tarenaya hassleriana HOM05D000173 ORTHO05D004400 1.4e-09 68.9 307 25.1
Lalb_Chr07g0195271 Lupinus albus HOM05D000173 ORTHO05D004400 1.8e-09 68.6 296 25.7
Ca_14793_v3 Cicer arietinum L. HOM05D000173 ORTHO05D004400 2.3e-09 68.2 295 25.8
Sed0004858 Sechium edule HOM05D000173 ORTHO05D004400 2.3e-09 68.2 295 25.1
arahy.Tifrunner.gnm1.ann1.SSG76K Arachis hypogaea HOM05D000173 ORTHO05D004400 3.0e-09 67.8 295 25.4
CiPaw.15G127800 Carya illinoinensis HOM05D000173 ORTHO05D004400 3.0e-09 67.8 297 26.6
PGR083G2056 Punica granatum HOM05D000173 ORTHO05D004400 5.1e-09 67.0 294 23.8
SHI00693 Sapria himalayana HOM05D006440 ORTHO05D003987 5.1e-09 67.0 82 45.1
Oeu055898.1 Olea europaea HOM05D000173 ORTHO05D004400 6.7e-09 66.6 297 25.9
SalBow5G1673 Salvia bowleyana HOM05D000173 ORTHO05D004400 6.7e-09 66.6 299 24.4
vmacro16454 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 6.7e-09 66.6 299 24.7
Nn5g28601 Nelumbo nucifera HOM05D006440 ORTHO05D003987 8.8e-09 66.2 52 53.8
Nn1g06280 Nelumbo nucifera HOM05D000173 ORTHO05D004400 1.1e-08 65.9 297 24.6
Oeu024320.1 Olea europaea HOM05D000173 ORTHO05D004400 1.5e-08 65.5 297 25.9
QL10p023744 Quercus lobata HOM05D000173 ORTHO05D004400 1.5e-08 65.5 295 26.1
MELO3C017295.2 Cucumis melo HOM05D000173 ORTHO05D004400 2.0e-08 65.1 295 24.7
Medtr5g066400 Medicago truncatula HOM05D000173 ORTHO05D004400 2.0e-08 65.1 295 25.1
Psat4g222600 Pisum sativum HOM05D000173 ORTHO05D004400 2.0e-08 65.1 295 25.4
Potri.015G053100 Populus trichocarpa HOM05D000173 ORTHO05D004400 2.0e-08 65.1 296 24.0
Lj9C429T7 Lonicera japonica HOM05D000173 ORTHO05D004400 2.5e-08 64.7 296 25.7
PSO017G6263 Papaver somniferum HOM05D000173 ORTHO05D004400 2.5e-08 64.7 305 24.3
TWI15G1235 Tripterygium wilfordii HOM05D000173 ORTHO05D004400 3.3e-08 64.3 295 25.4
Haze_11337 Corylus avellana HOM05D006440 ORTHO05D003987 4.3e-08 63.9 32 93.8
Eucgr.B00704 Eucalyptus grandis HOM05D000173 ORTHO05D004400 4.3e-08 63.9 297 25.3
Aqoxy5G04178 Aquilegia oxysepala HOM05D000173 ORTHO05D004400 5.7e-08 63.5 295 25.1
TPR.G32123 Trifolium pratense HOM05D000173 ORTHO05D004400 5.7e-08 63.5 295 24.7
Dinv07362 Davidia involucrata HOM05D000173 ORTHO05D004400 7.4e-08 63.2 291 25.4
Glyma.07G118800 Glycine max HOM05D000173 ORTHO05D004400 7.4e-08 63.2 295 24.7
HanXRQChr11g0323331 Helianthus annuus HOM05D000173 ORTHO05D004400 7.4e-08 63.2 299 25.4
Lalb_Chr05g0222631 Lupinus albus HOM05D000173 ORTHO05D004400 7.4e-08 63.2 304 22.7
CSS0020862 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 9.7e-08 62.8 295 23.7
TWI81G0665 Tripterygium wilfordii HOM05D000173 ORTHO05D004400 1.3e-07 62.4 295 25.1
VMungo0331G0580 Vigna mungo HOM05D000173 ORTHO05D004400 1.3e-07 62.4 295 24.4
Medtr8g464900 Medicago truncatula HOM05D000173 ORTHO05D004400 1.7e-07 62.0 288 25.3
PSO063G4537 Papaver somniferum HOM05D000173 ORTHO05D004400 1.7e-07 62.0 306 24.2
Phvul.010G044300 Phaseolus vulgaris HOM05D000173 ORTHO05D004400 1.7e-07 62.0 295 25.1
SEGI_01343 Sequoiadendron giganteum HOM05D000173 ORTHO05D004400 1.7e-07 62.0 296 22.6
Atru.chr9.786 Acer truncatum HOM05D000173 ORTHO05D004400 2.2e-07 61.6 294 24.8
Cpa.g.sc13.24 Carica papaya HOM05D000173 ORTHO05D004400 2.2e-07 61.6 312 24.0
MD11G1273400 Malus domestica HOM05D000173 ORTHO05D004400 2.2e-07 61.6 296 23.6
Cc06_g15350 Coffea canephora HOM05D000173 ORTHO05D004400 2.8e-07 61.2 301 24.9
Hund24237 Selenicereus undatus HOM05D000173 ORTHO05D004400 2.8e-07 61.2 303 25.7
ECA236G4399 Erigeron canadensis HOM05D000173 ORTHO05D004400 3.7e-07 60.8 299 24.7
Glyma.03G107300 Glycine max HOM05D000173 ORTHO05D004400 4.8e-07 60.5 295 24.4
Actinidia35080 Actinidia chinensis HOM05D000173 ORTHO05D004400 6.3e-07 60.1 299 24.4
arahy.Tifrunner.gnm1.ann1.NI3B5C Arachis hypogaea HOM05D000173 ORTHO05D004400 6.3e-07 60.1 292 23.6
MD03G1252000 Malus domestica HOM05D000173 ORTHO05D004400 6.3e-07 60.1 296 23.6
MD16G1213300 Malus domestica HOM05D006440 ORTHO05D003987 1.1e-06 59.3 34 73.5
PGR042G0409 Punica granatum HOM05D000173 ORTHO05D004400 1.1e-06 59.3 301 23.9
Peaxi162Scf00804g00008 Petunia axillaris HOM05D000173 ORTHO05D004400 1.8e-06 58.5 298 23.2
Prupe.4G154200 Prunus persica HOM05D000173 ORTHO05D004400 1.8e-06 58.5 298 24.2
SHI00689 Sapria himalayana HOM05D006440 ORTHO05D003987 1.8e-06 58.5 40 70.0
Thhalv10018569m.g Eutrema salsugineum HOM05D000173 ORTHO05D004400 2.4e-06 58.2 294 23.5


User provided reference genes

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